RNA–Protein interactions for RNA: ENST00000485618.1

SF3A1-208, Transcript of splicing factor 3a subunit 1, humanhuman

TSL 2

Gene SF3A1, Length 593 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3A1-208ENST00000485618 TBC1D16Q8TBP0 767 aa10.23□□□□□ -0.77
SF3A1-208ENST00000485618 ZBTB47Q9UFB7 747 aaPredicted RBP10.23□□□□□ -0.77
SF3A1-208ENST00000485618 HACL1Q9UJ83 578 aa10.23□□□□□ -0.77
SF3A1-208ENST00000485618 RIPOR2Q9Y4F9 1068 aa10.23□□□□□ -0.77
SF3A1-208ENST00000485618 ZNF804BA4D1E1 1349 aa10.23□□□□□ -0.77
SF3A1-208ENST00000485618 PASKQ96RG2 1323 aa10.23□□□□□ -0.77
SF3A1-208ENST00000485618 FOXN1O15353 648 aa10.22□□□□□ -0.77
SF3A1-208ENST00000485618 SURF6O75683 361 aaKnown RBP10.22□□□□□ -0.77
SF3A1-208ENST00000485618 PDE8BO95263 885 aa10.22□□□□□ -0.77
SF3A1-208ENST00000485618 IFIT1P09914 478 aaKnown RBP10.22□□□□□ -0.77
SF3A1-208ENST00000485618 PTPN12Q05209 780 aaKnown RBP10.22□□□□□ -0.77
SF3A1-208ENST00000485618 KIAA2012Q0VF49 1180 aa10.22□□□□□ -0.77
SF3A1-208ENST00000485618 TNIP1Q15025 636 aa10.22□□□□□ -0.77
SF3A1-208ENST00000485618 PUM3Q15397 648 aaKnown RBP10.22□□□□□ -0.77
SF3A1-208ENST00000485618 CEP85Q6P2H3 762 aa10.22□□□□□ -0.77
SF3A1-208ENST00000485618 SSH3Q8TE77 659 aa10.22□□□□□ -0.77
SF3A1-208ENST00000485618 AIDAQ96BJ3 306 aa10.22□□□□□ -0.77
SF3A1-208ENST00000485618 ZNF594Q96JF6 807 aaPredicted RBP10.22□□□□□ -0.77
SF3A1-208ENST00000485618 SIL1Q9H173 461 aa10.22□□□□□ -0.77
SF3A1-208ENST00000485618 ZNRF3Q9ULT6 936 aa10.22□□□□□ -0.77
SF3A1-208ENST00000485618 CLEC11AQ9Y240 323 aa10.22□□□□□ -0.77
SF3A1-208ENST00000485618 ADAMTSL1Q8N6G6 1762 aa10.21□□□□□ -0.77
SF3A1-208ENST00000485618 TMEM88BA6NKF7 163 aa10.21□□□□□ -0.77
SF3A1-208ENST00000485618 RAB11FIP3O75154 756 aa10.21□□□□□ -0.77
SF3A1-208ENST00000485618 SLC5A1P13866 664 aa10.21□□□□□ -0.77
SF3A1-208ENST00000485618 EPHX2P34913 555 aa10.21□□□□□ -0.77
SF3A1-208ENST00000485618 RFX5P48382 616 aaPredicted RBP10.21□□□□□ -0.77
SF3A1-208ENST00000485618 ZNF804AQ7Z570 1209 aa10.21□□□□□ -0.77
SF3A1-208ENST00000485618 PODNQ7Z5L7 613 aa10.21□□□□□ -0.77
SF3A1-208ENST00000485618 LPIN2Q92539 896 aa10.21□□□□□ -0.77
SF3A1-208ENST00000485618 COA1Q9GZY4 146 aa10.21□□□□□ -0.77
SF3A1-208ENST00000485618 C1orf115Q9H7X2 142 aa10.21□□□□□ -0.77
SF3A1-208ENST00000485618 GNL3LQ9NVN8 582 aaKnown RBP10.21□□□□□ -0.77
SF3A1-208ENST00000485618 POLLQ9UGP5 575 aa10.21□□□□□ -0.77
SF3A1-208ENST00000485618 RIMBP2O15034 1052 aa10.2□□□□□ -0.78
SF3A1-208ENST00000485618 FRAT2O75474 233 aaPredicted RBP10.2□□□□□ -0.78
SF3A1-208ENST00000485618 POLA2Q14181 598 aa10.2□□□□□ -0.78
SF3A1-208ENST00000485618 AOC3Q16853 763 aa10.2□□□□□ -0.78
SF3A1-208ENST00000485618 GORABQ5T7V8 394 aa10.2□□□□□ -0.78
SF3A1-208ENST00000485618 C15orf52Q6ZUT6 534 aaKnown RBP10.2□□□□□ -0.78
SF3A1-208ENST00000485618 HELBQ8NG08 1087 aaPredicted RBP10.2□□□□□ -0.78
SF3A1-208ENST00000485618 CRBNQ96SW2 442 aa10.2□□□□□ -0.78
SF3A1-208ENST00000485618 RWDD1Q9H446 243 aaPredicted RBP10.2□□□□□ -0.78
SF3A1-208ENST00000485618 NOP58Q9Y2X3 529 aaKnown RBP10.2□□□□□ -0.78
SF3A1-208ENST00000485618 SNED1Q8TER0 1413 aa10.19□□□□□ -0.78
SF3A1-208ENST00000485618 MED23Q9ULK4 1368 aa10.19□□□□□ -0.78
SF3A1-208ENST00000485618 PNMA6EA0A0J9YXQ4 647 aa10.19□□□□□ -0.78
SF3A1-208ENST00000485618 TAF5LO75529 589 aa10.19□□□□□ -0.78
SF3A1-208ENST00000485618 ITGBL1O95965 494 aaPredicted RBP10.19□□□□□ -0.78
SF3A1-208ENST00000485618 HIBADHP31937 336 aaKnown RBP10.19□□□□□ -0.78
SF3A1-208ENST00000485618 CTCFP49711 727 aaPredicted RBP10.19□□□□□ -0.78
SF3A1-208ENST00000485618 VEGFBP49765 207 aa10.19□□□□□ -0.78
SF3A1-208ENST00000485618 MMP14P50281 582 aa10.19□□□□□ -0.78
SF3A1-208ENST00000485618 LRRC24Q50LG9 513 aa10.19□□□□□ -0.78
SF3A1-208ENST00000485618 PNMA8AQ86V59 439 aaPredicted RBP10.19□□□□□ -0.78
SF3A1-208ENST00000485618 KLHDC4Q8TBB5 520 aa10.19□□□□□ -0.78
SF3A1-208ENST00000485618 PUS3Q9BZE2 481 aaKnown RBP10.19□□□□□ -0.78
SF3A1-208ENST00000485618 FZD9O00144 591 aa10.18□□□□□ -0.78
SF3A1-208ENST00000485618 LMOD1P29536 600 aaPredicted RBP10.18□□□□□ -0.78
SF3A1-208ENST00000485618 ATP2B3Q16720 1220 aa10.18□□□□□ -0.78
SF3A1-208ENST00000485618 MAP1SQ66K74 1059 aaPredicted RBP10.18□□□□□ -0.78
SF3A1-208ENST00000485618 GPC2Q8N158 579 aa10.18□□□□□ -0.78
SF3A1-208ENST00000485618 CLASRPQ8N2M8 674 aaKnown RBP10.18□□□□□ -0.78
SF3A1-208ENST00000485618 KIF1BPQ96EK5 621 aa10.18□□□□□ -0.78
SF3A1-208ENST00000485618 GPR108Q9NPR9 543 aa10.18□□□□□ -0.78
SF3A1-208ENST00000485618 PRDM10Q9NQV6 1147 aa10.18□□□□□ -0.78
SF3A1-208ENST00000485618 ABT1Q9ULW3 272 aaKnown RBP10.18□□□□□ -0.78
SF3A1-208ENST00000485618 PA2G4Q9UQ80 394 aaKnown RBP10.18□□□□□ -0.78
SF3A1-208ENST00000485618 GJA3Q9Y6H8 435 aa10.18□□□□□ -0.78
SF3A1-208ENST00000485618 COL4A5P29400 1685 aa10.18□□□□□ -0.78
SF3A1-208ENST00000485618 RASSF10A6NK89 507 aa10.17□□□□□ -0.78
SF3A1-208ENST00000485618 ECE2O60344 883 aa10.17□□□□□ -0.78
SF3A1-208ENST00000485618 CIAPIN1Q6FI81 312 aa10.17□□□□□ -0.78
SF3A1-208ENST00000485618 ATG9AQ7Z3C6 839 aa10.17□□□□□ -0.78
SF3A1-208ENST00000485618 CNTROBQ8N137 903 aa10.17□□□□□ -0.78
SF3A1-208ENST00000485618 NEUROD6Q96NK8 337 aa10.17□□□□□ -0.78
SF3A1-208ENST00000485618 TAF1P21675 1872 aa10.17□□□□□ -0.78
SF3A1-208ENST00000485618 LTBP1Q14766 1721 aa10.16□□□□□ -0.78
SF3A1-208ENST00000485618 USP17L3A6NCW0 530 aa10.16□□□□□ -0.78
SF3A1-208ENST00000485618 USP17L4A6NCW7 530 aa10.16□□□□□ -0.78
SF3A1-208ENST00000485618 SEMA3EO15041 775 aa10.16□□□□□ -0.78
SF3A1-208ENST00000485618 SASH1O94885 1247 aa10.16□□□□□ -0.78
SF3A1-208ENST00000485618 RPS12P25398 132 aaKnown RBP10.16□□□□□ -0.78
SF3A1-208ENST00000485618 TFCP2Q12800 502 aa10.16□□□□□ -0.78
SF3A1-208ENST00000485618 HDAC1Q13547 482 aaPredicted RBP10.16□□□□□ -0.78
SF3A1-208ENST00000485618 DOK7Q18PE1 504 aa10.16□□□□□ -0.78
SF3A1-208ENST00000485618 CCDC158Q5M9N0 1113 aa10.16□□□□□ -0.78
SF3A1-208ENST00000485618 TTLL5Q6EMB2 1281 aa10.16□□□□□ -0.78
SF3A1-208ENST00000485618 USP17L1Q7RTZ2 530 aa10.16□□□□□ -0.78
SF3A1-208ENST00000485618 GCC1Q96CN9 775 aa10.16□□□□□ -0.78
SF3A1-208ENST00000485618 DBNDD1Q9H9R9 158 aa10.16□□□□□ -0.78
SF3A1-208ENST00000485618 THSD7BQ9C0I4 1608 aa10.15□□□□□ -0.78
SF3A1-208ENST00000485618 MYO3BQ8WXR4 1341 aa10.15□□□□□ -0.78
SF3A1-208ENST00000485618 IFIT2P09913 472 aaKnown RBP10.15□□□□□ -0.78
SF3A1-208ENST00000485618 UQCRFS1P1P0C7P4 283 aa10.15□□□□□ -0.78
SF3A1-208ENST00000485618 IL1R1P14778 569 aa10.15□□□□□ -0.78
SF3A1-208ENST00000485618 LBX1P52954 281 aa10.15□□□□□ -0.78
SF3A1-208ENST00000485618 DEFB115Q30KQ5 88 aa10.15□□□□□ -0.78
SF3A1-208ENST00000485618 STRIP1Q5VSL9 837 aa10.15□□□□□ -0.78
SF3A1-208ENST00000485618 PAXIP1Q6ZW49 1069 aaPredicted RBP10.15□□□□□ -0.78
Retrieved 100 of 20,778 RNA–protein pairs in 17.2 ms