RNA–Protein interactions for RNA: ENST00000484112.5

CPSF4-213, Transcript of cleavage and polyadenylation specific factor 4, humanhuman

TSL 2

Gene CPSF4, Length 825 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF4-213ENST00000484112 USP17L4A6NCW7 530 aa12.75□□□□□ -0.37
CPSF4-213ENST00000484112 UBE2Q2LH0YL09 131 aa12.75□□□□□ -0.37
CPSF4-213ENST00000484112 VAMP4O75379 141 aa12.75□□□□□ -0.37
CPSF4-213ENST00000484112 TBC1D8O95759 1140 aa12.75□□□□□ -0.37
CPSF4-213ENST00000484112 PCCAP05165 728 aaPredicted RBP12.75□□□□□ -0.37
CPSF4-213ENST00000484112 ATP2B4P23634 1241 aa12.75□□□□□ -0.37
CPSF4-213ENST00000484112 XDHP47989 1333 aa12.75□□□□□ -0.37
CPSF4-213ENST00000484112 EXOSC9Q06265 439 aaKnown RBP12.75□□□□□ -0.37
CPSF4-213ENST00000484112 USP17L1Q7RTZ2 530 aa12.75□□□□□ -0.37
CPSF4-213ENST00000484112 REM2Q8IYK8 340 aaPredicted RBP12.75□□□□□ -0.37
CPSF4-213ENST00000484112 CCDC191Q8NCU4 936 aa12.75□□□□□ -0.37
CPSF4-213ENST00000484112 SPINK5Q9NQ38 1064 aaPredicted RBP12.75□□□□□ -0.37
CPSF4-213ENST00000484112 CWC25Q9NXE8 425 aaPredicted RBP12.75□□□□□ -0.37
CPSF4-213ENST00000484112 SCN9AQ15858 1988 aa12.74□□□□□ -0.37
CPSF4-213ENST00000484112 WTIPA6NIX2 430 aaPredicted RBP12.74□□□□□ -0.37
CPSF4-213ENST00000484112 CT47B1P0C2W7 299 aaPredicted RBP12.74□□□□□ -0.37
CPSF4-213ENST00000484112 FKBP1BP68106 108 aa12.74□□□□□ -0.37
CPSF4-213ENST00000484112 SLFN5Q08AF3 891 aa12.74□□□□□ -0.37
CPSF4-213ENST00000484112 MKRN3Q13064 507 aaKnown RBP12.74□□□□□ -0.37
CPSF4-213ENST00000484112 MXD3Q9BW11 206 aa12.74□□□□□ -0.37
CPSF4-213ENST00000484112 NBPF9Q3BBW0 867 aa12.73□□□□□ -0.37
CPSF4-213ENST00000484112 PODNQ7Z5L7 613 aa12.73□□□□□ -0.37
CPSF4-213ENST00000484112 TRMT2AQ8IZ69 625 aaKnown RBP12.73□□□□□ -0.37
CPSF4-213ENST00000484112 GMLQ99445 158 aa12.73□□□□□ -0.37
CPSF4-213ENST00000484112 HPS5Q9UPZ3 1129 aa12.73□□□□□ -0.37
CPSF4-213ENST00000484112 AKAP11Q9UKA4 1901 aa12.72□□□□□ -0.37
CPSF4-213ENST00000484112 SLC4A2P04920 1241 aa12.72□□□□□ -0.37
CPSF4-213ENST00000484112 PRKG1Q13976 671 aa12.72□□□□□ -0.37
CPSF4-213ENST00000484112 KSR2Q6VAB6 950 aa12.72□□□□□ -0.37
CPSF4-213ENST00000484112 OGFOD1Q8N543 542 aa12.72□□□□□ -0.37
CPSF4-213ENST00000484112 ZNF296Q8WUU4 475 aaPredicted RBP12.72□□□□□ -0.37
CPSF4-213ENST00000484112 CDC5LQ99459 802 aaKnown RBP12.72□□□□□ -0.37
CPSF4-213ENST00000484112 METTL22Q9BUU2 404 aaPredicted RBP12.72□□□□□ -0.37
CPSF4-213ENST00000484112 ZBTB4Q9P1Z0 1013 aaPredicted RBP12.72□□□□□ -0.37
CPSF4-213ENST00000484112 PCDH10Q9P2E7 1040 aa12.72□□□□□ -0.37
CPSF4-213ENST00000484112 PITPNM2Q9BZ72 1349 aa12.71□□□□□ -0.37
CPSF4-213ENST00000484112 NF2P35240 595 aa12.71□□□□□ -0.37
CPSF4-213ENST00000484112 MINPP1Q9UNW1 487 aa12.71□□□□□ -0.37
CPSF4-213ENST00000484112 MAP3K2Q9Y2U5 619 aa12.71□□□□□ -0.37
CPSF4-213ENST00000484112 SASH1O94885 1247 aa12.7□□□□□ -0.38
CPSF4-213ENST00000484112 CTSWP56202 376 aa12.7□□□□□ -0.38
CPSF4-213ENST00000484112 NEXNQ0ZGT2 675 aa12.7□□□□□ -0.38
CPSF4-213ENST00000484112 FLIIQ13045 1269 aa12.7□□□□□ -0.38
CPSF4-213ENST00000484112 PKN2Q16513 984 aaKnown RBP12.7□□□□□ -0.38
CPSF4-213ENST00000484112 GREM2Q9H772 168 aa12.7□□□□□ -0.38
CPSF4-213ENST00000484112 PAPPA2Q9BXP8 1791 aa12.69□□□□□ -0.38
CPSF4-213ENST00000484112 GPR25O00155 361 aa12.69□□□□□ -0.38
CPSF4-213ENST00000484112 WNT10BO00744 389 aa12.69□□□□□ -0.38
CPSF4-213ENST00000484112 CCT4P50991 539 aaKnown RBP12.69□□□□□ -0.38
CPSF4-213ENST00000484112 ALDH1L2Q3SY69 923 aa12.69□□□□□ -0.38
CPSF4-213ENST00000484112 DACT2Q5SW24 774 aa12.69□□□□□ -0.38
CPSF4-213ENST00000484112 TTLL11Q8NHH1 800 aa12.69□□□□□ -0.38
CPSF4-213ENST00000484112 BSDC1Q9NW68 430 aaPredicted RBP12.69□□□□□ -0.38
CPSF4-213ENST00000484112 ZNF609O15014 1411 aa12.69□□□□□ -0.38
CPSF4-213ENST00000484112 MED23Q9ULK4 1368 aa12.69□□□□□ -0.38
CPSF4-213ENST00000484112 PI4KAP2A4QPH2 592 aa12.68□□□□□ -0.38
CPSF4-213ENST00000484112 TM4SF4P48230 202 aa12.68□□□□□ -0.38
CPSF4-213ENST00000484112 PTPN12Q05209 780 aaKnown RBP12.68□□□□□ -0.38
CPSF4-213ENST00000484112 STRIP1Q5VSL9 837 aa12.68□□□□□ -0.38
CPSF4-213ENST00000484112 PRPF38BQ5VTL8 546 aaKnown RBP12.68□□□□□ -0.38
CPSF4-213ENST00000484112 ARMC9Q7Z3E5 817 aa12.68□□□□□ -0.38
CPSF4-213ENST00000484112 TXNRD3Q86VQ6 643 aa12.68□□□□□ -0.38
CPSF4-213ENST00000484112 PI4KAP1Q8N8J0 262 aa12.68□□□□□ -0.38
CPSF4-213ENST00000484112 COA1Q9GZY4 146 aa12.68□□□□□ -0.38
CPSF4-213ENST00000484112 ZBED9Q6R2W3 1325 aa12.67□□□□□ -0.38
CPSF4-213ENST00000484112 MYO3BQ8WXR4 1341 aa12.67□□□□□ -0.38
CPSF4-213ENST00000484112 IGKV5-2P06315 115 aa12.67□□□□□ -0.38
CPSF4-213ENST00000484112 IGHMBP2P38935 993 aaKnown RBP12.67□□□□□ -0.38
CPSF4-213ENST00000484112 HNRNPUQ00839 825 aaKnown RBP eCLIP12.67□□□□□ -0.38
CPSF4-213ENST00000484112 SREBF2Q12772 1141 aa12.67□□□□□ -0.38
CPSF4-213ENST00000484112 FKBP5Q13451 457 aaPredicted RBP12.67□□□□□ -0.38
CPSF4-213ENST00000484112 CWF19L2Q2TBE0 894 aaKnown RBP12.67□□□□□ -0.38
CPSF4-213ENST00000484112 TTLL5Q6EMB2 1281 aa12.67□□□□□ -0.38
CPSF4-213ENST00000484112 KIAA0825Q8IV33 1275 aa12.67□□□□□ -0.38
CPSF4-213ENST00000484112 ANGEL1Q9UNK9 670 aaKnown RBP12.67□□□□□ -0.38
CPSF4-213ENST00000484112 FZD1Q9UP38 647 aa12.67□□□□□ -0.38
CPSF4-213ENST00000484112 PTPRCP08575 1304 aa12.66□□□□□ -0.38
CPSF4-213ENST00000484112 FKTNO75072 461 aa12.66□□□□□ -0.38
CPSF4-213ENST00000484112 KLRK1P26718 216 aa12.66□□□□□ -0.38
CPSF4-213ENST00000484112 GTF2IP78347 998 aa12.66□□□□□ -0.38
CPSF4-213ENST00000484112 DNAAF4Q8WXU2 420 aa12.66□□□□□ -0.38
CPSF4-213ENST00000484112 CDCA7LQ96GN5 454 aa12.66□□□□□ -0.38
CPSF4-213ENST00000484112 R3HDMLQ9H3Y0 253 aa12.66□□□□□ -0.38
CPSF4-213ENST00000484112 LEMD3Q9Y2U8 911 aa12.66□□□□□ -0.38
CPSF4-213ENST00000484112 ZNF804BA4D1E1 1349 aa12.65□□□□□ -0.38
CPSF4-213ENST00000484112 KCNJ4P48050 445 aa12.65□□□□□ -0.38
CPSF4-213ENST00000484112 FBXO46Q6PJ61 603 aaPredicted RBP12.65□□□□□ -0.38
CPSF4-213ENST00000484112 G2E3Q7L622 706 aa12.65□□□□□ -0.38
CPSF4-213ENST00000484112 UBE3BQ7Z3V4 1068 aa12.65□□□□□ -0.38
CPSF4-213ENST00000484112 APOBEC3FQ8IUX4 373 aaKnown RBP12.65□□□□□ -0.38
CPSF4-213ENST00000484112 LINS1Q8NG48 757 aa12.65□□□□□ -0.38
CPSF4-213ENST00000484112 MPHOSPH8Q99549 860 aa12.65□□□□□ -0.38
CPSF4-213ENST00000484112 PSME4Q14997 1843 aa12.65□□□□□ -0.39
CPSF4-213ENST00000484112 NEURL1BA8MQ27 555 aa12.64□□□□□ -0.39
CPSF4-213ENST00000484112 ITGA6P23229 1130 aa12.64□□□□□ -0.39
CPSF4-213ENST00000484112 SPRYD7Q5W111 196 aa12.64□□□□□ -0.39
CPSF4-213ENST00000484112 SLC10A4Q96EP9 437 aa12.64□□□□□ -0.39
CPSF4-213ENST00000484112 ANKRD2Q9GZV1 360 aa12.64□□□□□ -0.39
CPSF4-213ENST00000484112 F8W031 263 aaPredicted RBP12.63□□□□□ -0.39
CPSF4-213ENST00000484112 H7C1W4 665 aa12.63□□□□□ -0.39
Retrieved 100 of 20,778 RNA–protein pairs in 9.1 ms