RNA–Protein interactions for RNA: ENST00000484038.1

SEMA3D-204, Transcript of semaphorin 3D, humanhuman

TSL 1 (best)

Gene SEMA3D, Length 1,503 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SEMA3D-204ENST00000484038 MSL1Q68DK7 614 aa8.46□□□□□ -1.05
SEMA3D-204ENST00000484038 CYP2U1Q7Z449 544 aa8.46□□□□□ -1.05
SEMA3D-204ENST00000484038 ADAMTS19Q8TE59 1207 aa8.46□□□□□ -1.05
SEMA3D-204ENST00000484038 CCNL1Q9UK58 526 aaPredicted RBP8.46□□□□□ -1.05
SEMA3D-204ENST00000484038 NSD2O96028 1365 aa8.46□□□□□ -1.06
SEMA3D-204ENST00000484038 GRIN3BO60391 1043 aa8.45□□□□□ -1.06
SEMA3D-204ENST00000484038 MAN1A2O60476 641 aa8.45□□□□□ -1.06
SEMA3D-204ENST00000484038 PHTF2Q8N3S3 785 aa8.45□□□□□ -1.06
SEMA3D-204ENST00000484038 IP6K1Q92551 441 aa8.45□□□□□ -1.06
SEMA3D-204ENST00000484038 CALR3Q96L12 384 aaKnown RBP8.45□□□□□ -1.06
SEMA3D-204ENST00000484038 TERF2IPQ9NYB0 399 aa8.45□□□□□ -1.06
SEMA3D-204ENST00000484038 MEGF6O75095 1541 aa8.45□□□□□ -1.06
SEMA3D-204ENST00000484038 USP47Q96K76 1375 aa8.45□□□□□ -1.06
SEMA3D-204ENST00000484038 RGPD2P0DJD1 1756 aa8.45□□□□□ -1.06
SEMA3D-204ENST00000484038 ATP10DQ9P241 1426 aa8.45□□□□□ -1.06
SEMA3D-204ENST00000484038 MEN1O00255 615 aa8.44□□□□□ -1.06
SEMA3D-204ENST00000484038 USP4Q13107 963 aa8.44□□□□□ -1.06
SEMA3D-204ENST00000484038 INSM2Q96T92 566 aaPredicted RBP8.44□□□□□ -1.06
SEMA3D-204ENST00000484038 CARD11Q9BXL7 1154 aa8.44□□□□□ -1.06
SEMA3D-204ENST00000484038 MAP3K19Q56UN5 1328 aa8.44□□□□□ -1.06
SEMA3D-204ENST00000484038 C5P01031 1676 aa8.44□□□□□ -1.06
SEMA3D-204ENST00000484038 TTLL8A6PVC2 850 aa8.44□□□□□ -1.06
SEMA3D-204ENST00000484038 SOBPA7XYQ1 873 aa8.44□□□□□ -1.06
SEMA3D-204ENST00000484038 TRAK2O60296 914 aa8.44□□□□□ -1.06
SEMA3D-204ENST00000484038 PTGIRP43119 386 aa8.44□□□□□ -1.06
SEMA3D-204ENST00000484038 AMPHP49418 695 aa8.44□□□□□ -1.06
SEMA3D-204ENST00000484038 MAP7D1Q3KQU3 841 aa8.44□□□□□ -1.06
SEMA3D-204ENST00000484038 COL23A1Q86Y22 540 aaPredicted RBP8.44□□□□□ -1.06
SEMA3D-204ENST00000484038 ZCRB1Q8TBF4 217 aaKnown RBP8.44□□□□□ -1.06
SEMA3D-204ENST00000484038 ZNF526Q8TF50 670 aaPredicted RBP8.44□□□□□ -1.06
SEMA3D-204ENST00000484038 COG3Q96JB2 828 aa8.44□□□□□ -1.06
SEMA3D-204ENST00000484038 OSBPL3Q9H4L5 887 aa8.44□□□□□ -1.06
SEMA3D-204ENST00000484038 FIGNL2A6NMB9 653 aa8.43□□□□□ -1.06
SEMA3D-204ENST00000484038 SPINT1O43278 529 aa8.43□□□□□ -1.06
SEMA3D-204ENST00000484038 HOXC9P31274 260 aa8.43□□□□□ -1.06
SEMA3D-204ENST00000484038 EML3Q32P44 896 aa8.43□□□□□ -1.06
SEMA3D-204ENST00000484038 ZMYND15Q9H091 742 aa8.43□□□□□ -1.06
SEMA3D-204ENST00000484038 ARHGEF10LQ9HCE6 1279 aa8.43□□□□□ -1.06
SEMA3D-204ENST00000484038 RAB6BQ9NRW1 208 aa8.43□□□□□ -1.06
SEMA3D-204ENST00000484038 FBLN1P23142 703 aa8.42□□□□□ -1.06
SEMA3D-204ENST00000484038 DEPDC4Q8N2C3 294 aa8.42□□□□□ -1.06
SEMA3D-204ENST00000484038 USHBP1Q8N6Y0 703 aa8.42□□□□□ -1.06
SEMA3D-204ENST00000484038 WWC3Q9ULE0 1092 aa8.42□□□□□ -1.06
SEMA3D-204ENST00000484038 CTSOP43234 321 aaPredicted RBP8.41□□□□□ -1.06
SEMA3D-204ENST00000484038 NLRP3Q96P20 1036 aa8.41□□□□□ -1.06
SEMA3D-204ENST00000484038 SMG6Q86US8 1419 aaKnown RBP8.41□□□□□ -1.06
SEMA3D-204ENST00000484038 RTL1A6NKG5 1358 aa8.4□□□□□ -1.06
SEMA3D-204ENST00000484038 PALLDQ8WX93 1383 aa8.4□□□□□ -1.06
SEMA3D-204ENST00000484038 USP17L5A8MUK1 530 aa8.4□□□□□ -1.06
SEMA3D-204ENST00000484038 NCOA4Q13772 614 aa8.4□□□□□ -1.06
SEMA3D-204ENST00000484038 RAPGEF4Q8WZA2 1011 aa8.4□□□□□ -1.06
SEMA3D-204ENST00000484038 UCN2Q96RP3 112 aa8.4□□□□□ -1.06
SEMA3D-204ENST00000484038 TAF1LQ8IZX4 1826 aa8.4□□□□□ -1.06
SEMA3D-204ENST00000484038 C4BP0C0L5 1744 aa8.4□□□□□ -1.07
SEMA3D-204ENST00000484038 ADCY9O60503 1353 aa8.4□□□□□ -1.07
SEMA3D-204ENST00000484038 A0A1W2PRU2 124 aa8.39□□□□□ -1.07
SEMA3D-204ENST00000484038 RRS1Q15050 365 aaKnown RBP8.39□□□□□ -1.07
SEMA3D-204ENST00000484038 NBPF6Q5VWK0 638 aa8.39□□□□□ -1.07
SEMA3D-204ENST00000484038 MPRIPQ6WCQ1 1025 aa8.39□□□□□ -1.07
SEMA3D-204ENST00000484038 TBC1D9Q6ZT07 1266 aa8.39□□□□□ -1.07
SEMA3D-204ENST00000484038 KDF1Q8NAX2 398 aaPredicted RBP8.39□□□□□ -1.07
SEMA3D-204ENST00000484038 NFATC2IPQ8NCF5 419 aa8.39□□□□□ -1.07
SEMA3D-204ENST00000484038 NBPF4Q96M43 638 aa8.39□□□□□ -1.07
SEMA3D-204ENST00000484038 DNMT3LQ9UJW3 386 aa8.39□□□□□ -1.07
SEMA3D-204ENST00000484038 CD2APQ9Y5K6 639 aa8.39□□□□□ -1.07
SEMA3D-204ENST00000484038 PCDH11XQ9BZA7 1347 aa8.39□□□□□ -1.07
SEMA3D-204ENST00000484038 PCDH11YQ9BZA8 1340 aa8.39□□□□□ -1.07
SEMA3D-204ENST00000484038 HSPA6P17066 643 aa8.39□□□□□ -1.07
SEMA3D-204ENST00000484038 TATP17735 454 aaPredicted RBP8.39□□□□□ -1.07
SEMA3D-204ENST00000484038 ZNF800Q2TB10 664 aaPredicted RBP eCLIP8.39□□□□□ -1.07
SEMA3D-204ENST00000484038 FLAD1Q8NFF5 587 aa8.39□□□□□ -1.07
SEMA3D-204ENST00000484038 NOD1Q9Y239 953 aa8.39□□□□□ -1.07
SEMA3D-204ENST00000484038 TOGARAM1Q9Y4F4 1720 aa8.39□□□□□ -1.07
SEMA3D-204ENST00000484038 CGNL1Q0VF96 1302 aa8.38□□□□□ -1.07
SEMA3D-204ENST00000484038 IGSF1Q8N6C5 1336 aa8.38□□□□□ -1.07
SEMA3D-204ENST00000484038 ATP9BO43861 1147 aa8.38□□□□□ -1.07
SEMA3D-204ENST00000484038 GNRH1P01148 92 aa8.38□□□□□ -1.07
SEMA3D-204ENST00000484038 PUS7Q96PZ0 661 aaKnown RBP8.38□□□□□ -1.07
SEMA3D-204ENST00000484038 TONSLQ96HA7 1378 aa8.37□□□□□ -1.07
SEMA3D-204ENST00000484038 USP17L3A6NCW0 530 aa8.37□□□□□ -1.07
SEMA3D-204ENST00000484038 USP17L4A6NCW7 530 aa8.37□□□□□ -1.07
SEMA3D-204ENST00000484038 USP17L2Q6R6M4 530 aa8.37□□□□□ -1.07
SEMA3D-204ENST00000484038 SMIM5Q71RC9 77 aa8.37□□□□□ -1.07
SEMA3D-204ENST00000484038 USP17L1Q7RTZ2 530 aa8.37□□□□□ -1.07
SEMA3D-204ENST00000484038 AMIGO3Q86WK7 504 aa8.37□□□□□ -1.07
SEMA3D-204ENST00000484038 RNF217Q8TC41 542 aa8.37□□□□□ -1.07
SEMA3D-204ENST00000484038 GGNBP2Q9H3C7 697 aa8.37□□□□□ -1.07
SEMA3D-204ENST00000484038 ITGB4P16144 1822 aa8.36□□□□□ -1.07
SEMA3D-204ENST00000484038 NSD3Q9BZ95 1437 aa8.36□□□□□ -1.07
SEMA3D-204ENST00000484038 UBR3Q6ZT12 1888 aa8.36□□□□□ -1.07
SEMA3D-204ENST00000484038 ST20-MTHFSA0A0A6YYL1 179 aa8.36□□□□□ -1.07
SEMA3D-204ENST00000484038 HMGB2P26583 209 aaKnown RBP8.36□□□□□ -1.07
SEMA3D-204ENST00000484038 FOXD4L5Q5VV16 416 aaPredicted RBP8.36□□□□□ -1.07
SEMA3D-204ENST00000484038 ZNF775Q96BV0 537 aaPredicted RBP8.36□□□□□ -1.07
SEMA3D-204ENST00000484038 TESK2Q96S53 571 aa8.36□□□□□ -1.07
SEMA3D-204ENST00000484038 TFIP11Q9UBB9 837 aaKnown RBP8.36□□□□□ -1.07
SEMA3D-204ENST00000484038 KIF20BQ96Q89 1820 aa8.36□□□□□ -1.07
SEMA3D-204ENST00000484038 CYP27B1O15528 508 aa8.35□□□□□ -1.07
SEMA3D-204ENST00000484038 LZTS3O60299 673 aaPredicted RBP8.35□□□□□ -1.07
SEMA3D-204ENST00000484038 STAU1O95793 577 aaKnown RBP8.35□□□□□ -1.07
Retrieved 100 of 20,778 RNA–protein pairs in 43.2 ms