RNA–Protein interactions for RNA: ENST00000482879.5

SDC1-206, Transcript of syndecan 1, humanhuman

TSL 4

Gene SDC1, Length 558 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC1-206ENST00000482879 SNED1Q8TER0 1413 aa15.03■□□□□ -0
SDC1-206ENST00000482879 YBX3P16989 372 aaKnown RBP eCLIP15.03■□□□□ -0
SDC1-206ENST00000482879 ADORA1P30542 326 aa15.03■□□□□ -0
SDC1-206ENST00000482879 FKBP4Q02790 459 aaKnown RBP eCLIP15.03■□□□□ -0
SDC1-206ENST00000482879 GPR162Q16538 588 aa15.03■□□□□ -0
SDC1-206ENST00000482879 GORABQ5T7V8 394 aa15.03■□□□□ -0
SDC1-206ENST00000482879 XAGE2Q96GT9 111 aa15.03■□□□□ -0
SDC1-206ENST00000482879 PSMD1Q99460 953 aa15.03■□□□□ -0
SDC1-206ENST00000482879 EYA3Q99504 573 aa15.03■□□□□ -0
SDC1-206ENST00000482879 RTFDC1Q9BY42 306 aaPredicted RBP15.03■□□□□ -0
SDC1-206ENST00000482879 CHD4Q14839 1912 aa15.03■□□□□ -0
SDC1-206ENST00000482879 RIMBP2O15034 1052 aa15.02■□□□□ -0
SDC1-206ENST00000482879 KLRK1P26718 216 aa15.02■□□□□ -0
SDC1-206ENST00000482879 WASHC4Q2M389 1173 aa15.02■□□□□ -0
SDC1-206ENST00000482879 ARHGAP27Q6ZUM4 889 aa15.02■□□□□ -0
SDC1-206ENST00000482879 DBNDD2Q9BQY9 259 aa15.02■□□□□ -0
SDC1-206ENST00000482879 ZC3H12CQ9C0D7 883 aaKnown RBP15.02■□□□□ -0
SDC1-206ENST00000482879 ARAP2Q8WZ64 1704 aa15.02□□□□□ -0.01
SDC1-206ENST00000482879 DUOX1Q9NRD9 1551 aa15.02□□□□□ -0.01
SDC1-206ENST00000482879 CAVIN4Q5BKX8 364 aa15.01□□□□□ -0.01
SDC1-206ENST00000482879 C15orf52Q6ZUT6 534 aaKnown RBP15.01□□□□□ -0.01
SDC1-206ENST00000482879 TXNRD3Q86VQ6 643 aa15.01□□□□□ -0.01
SDC1-206ENST00000482879 TAOK3Q9H2K8 898 aa15.01□□□□□ -0.01
SDC1-206ENST00000482879 ZNF277Q9NRM2 450 aaPredicted RBP15.01□□□□□ -0.01
SDC1-206ENST00000482879 TLR7Q9NYK1 1049 aaKnown RBP15.01□□□□□ -0.01
SDC1-206ENST00000482879 DBNLQ9UJU6 430 aaKnown RBP15.01□□□□□ -0.01
SDC1-206ENST00000482879 SRCAPQ6ZRS2 3230 aa15□□□□□ -0.01
SDC1-206ENST00000482879 MED23Q9ULK4 1368 aa15□□□□□ -0.01
SDC1-206ENST00000482879 NFKBIEO00221 500 aa15□□□□□ -0.01
SDC1-206ENST00000482879 GYG1P46976 350 aa15□□□□□ -0.01
SDC1-206ENST00000482879 BCAMP50895 628 aa15□□□□□ -0.01
SDC1-206ENST00000482879 VPS37DQ86XT2 251 aa15□□□□□ -0.01
SDC1-206ENST00000482879 OTUD7AQ8TE49 926 aaPredicted RBP15□□□□□ -0.01
SDC1-206ENST00000482879 FAM84BQ96KN1 310 aaPredicted RBP15□□□□□ -0.01
SDC1-206ENST00000482879 SBF1O95248 1867 aa14.99□□□□□ -0.01
SDC1-206ENST00000482879 LTBP3Q9NS15 1303 aa14.99□□□□□ -0.01
SDC1-206ENST00000482879 IRS2Q9Y4H2 1338 aa14.99□□□□□ -0.01
SDC1-206ENST00000482879 G3V3G9 751 aa14.99□□□□□ -0.01
SDC1-206ENST00000482879 PPIP5K2O43314 1243 aa14.99□□□□□ -0.01
SDC1-206ENST00000482879 PDE4AP27815 886 aa14.99□□□□□ -0.01
SDC1-206ENST00000482879 HIBADHP31937 336 aaKnown RBP14.99□□□□□ -0.01
SDC1-206ENST00000482879 RASSF7Q02833 373 aa14.99□□□□□ -0.01
SDC1-206ENST00000482879 AOC3Q16853 763 aa14.99□□□□□ -0.01
SDC1-206ENST00000482879 CCDC158Q5M9N0 1113 aa14.99□□□□□ -0.01
SDC1-206ENST00000482879 DCAF8Q5TAQ9 597 aa14.99□□□□□ -0.01
SDC1-206ENST00000482879 ZNF804AQ7Z570 1209 aa14.99□□□□□ -0.01
SDC1-206ENST00000482879 FBXO33Q7Z6M2 555 aa14.99□□□□□ -0.01
SDC1-206ENST00000482879 VPS33BQ9H267 617 aa14.99□□□□□ -0.01
SDC1-206ENST00000482879 MYH13Q9UKX3 1938 aa14.98□□□□□ -0.01
SDC1-206ENST00000482879 GRIN3BO60391 1043 aa14.98□□□□□ -0.01
SDC1-206ENST00000482879 MX1P20591 662 aa14.98□□□□□ -0.01
SDC1-206ENST00000482879 IARSP41252 1262 aaKnown RBP14.98□□□□□ -0.01
SDC1-206ENST00000482879 PHKA1P46020 1223 aa14.98□□□□□ -0.01
SDC1-206ENST00000482879 KIAA2012Q0VF49 1180 aa14.98□□□□□ -0.01
SDC1-206ENST00000482879 TTC39AQ5SRH9 613 aa14.98□□□□□ -0.01
SDC1-206ENST00000482879 CCDC102BQ68D86 513 aa14.98□□□□□ -0.01
SDC1-206ENST00000482879 SKAP1Q86WV1 359 aa14.98□□□□□ -0.01
SDC1-206ENST00000482879 PLEKHM2Q8IWE5 1019 aa14.98□□□□□ -0.01
SDC1-206ENST00000482879 LARGE2Q8N3Y3 721 aa14.98□□□□□ -0.01
SDC1-206ENST00000482879 GPATCH3Q96I76 525 aa14.98□□□□□ -0.01
SDC1-206ENST00000482879 GNL3LQ9NVN8 582 aaKnown RBP14.98□□□□□ -0.01
SDC1-206ENST00000482879 PDE1AP54750 535 aa14.97□□□□□ -0.01
SDC1-206ENST00000482879 DOK7Q18PE1 504 aa14.97□□□□□ -0.01
SDC1-206ENST00000482879 COA1Q9GZY4 146 aa14.97□□□□□ -0.01
SDC1-206ENST00000482879 ECHDC1Q9NTX5 307 aa14.97□□□□□ -0.01
SDC1-206ENST00000482879 SALL3Q9BXA9 1300 aa14.96□□□□□ -0.01
SDC1-206ENST00000482879 AKAP11Q9UKA4 1901 aa14.96□□□□□ -0.01
SDC1-206ENST00000482879 DICER1Q9UPY3 1922 aaKnown RBP14.96□□□□□ -0.01
SDC1-206ENST00000482879 UQCRFS1P1P0C7P4 283 aa14.96□□□□□ -0.01
SDC1-206ENST00000482879 RGS3P49796 1198 aa14.96□□□□□ -0.01
SDC1-206ENST00000482879 TSHZ3Q63HK5 1081 aa14.96□□□□□ -0.01
SDC1-206ENST00000482879 DBNDD1Q9H9R9 158 aa14.96□□□□□ -0.01
SDC1-206ENST00000482879 CD209Q9NNX6 404 aa14.96□□□□□ -0.01
SDC1-206ENST00000482879 STAP2Q9UGK3 403 aa14.96□□□□□ -0.01
SDC1-206ENST00000482879 IQSEC3Q9UPP2 1182 aaPredicted RBP14.96□□□□□ -0.01
SDC1-206ENST00000482879 TTC41PQ6P2S7 1318 aa14.95□□□□□ -0.02
SDC1-206ENST00000482879 DCAF8L1A6NGE4 600 aa14.95□□□□□ -0.02
SDC1-206ENST00000482879 ERC2O15083 957 aa14.95□□□□□ -0.02
SDC1-206ENST00000482879 FRAT2O75474 233 aaPredicted RBP14.95□□□□□ -0.02
SDC1-206ENST00000482879 ATP5JP18859 108 aa14.95□□□□□ -0.02
SDC1-206ENST00000482879 TDRD7Q8NHU6 1098 aaKnown RBP14.95□□□□□ -0.02
SDC1-206ENST00000482879 GOLGB1Q14789 3259 aaKnown RBP14.95□□□□□ -0.02
SDC1-206ENST00000482879 ECE2O60344 883 aa14.94□□□□□ -0.02
SDC1-206ENST00000482879 IL1R1P14778 569 aa14.94□□□□□ -0.02
SDC1-206ENST00000482879 LMNB1P20700 586 aa14.94□□□□□ -0.02
SDC1-206ENST00000482879 ARID4AP29374 1257 aaPredicted RBP14.94□□□□□ -0.02
SDC1-206ENST00000482879 PRELPP51888 382 aa14.94□□□□□ -0.02
SDC1-206ENST00000482879 NIM1KQ8IY84 436 aa14.94□□□□□ -0.02
SDC1-206ENST00000482879 JDP2Q8WYK2 163 aa14.94□□□□□ -0.02
SDC1-206ENST00000482879 ZNF512BQ96KM6 892 aaPredicted RBP14.94□□□□□ -0.02
SDC1-206ENST00000482879 BOLA2Q9H3K6 86 aa14.94□□□□□ -0.02
SDC1-206ENST00000482879 OSBPL3Q9H4L5 887 aa14.94□□□□□ -0.02
SDC1-206ENST00000482879 AOX1Q06278 1338 aa14.93□□□□□ -0.02
SDC1-206ENST00000482879 SCN9AQ15858 1988 aa14.93□□□□□ -0.02
SDC1-206ENST00000482879 SEMA3EO15041 775 aa14.93□□□□□ -0.02
SDC1-206ENST00000482879 GLRX3O76003 335 aaKnown RBP14.93□□□□□ -0.02
SDC1-206ENST00000482879 MCAMP43121 646 aa14.93□□□□□ -0.02
SDC1-206ENST00000482879 SCARF1Q14162 830 aa14.93□□□□□ -0.02
SDC1-206ENST00000482879 PODNQ7Z5L7 613 aa14.93□□□□□ -0.02
SDC1-206ENST00000482879 PI4K2BQ8TCG2 481 aa14.93□□□□□ -0.02
Retrieved 100 of 20,778 RNA–protein pairs in 11.4 ms