RNA–Protein interactions for RNA: ENST00000482065.1

LIMS3-204, Transcript of LIM zinc finger domain containing 3, humanhuman

TSL 1 (best)

Gene LIMS3, Length 690 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS3-204ENST00000482065 A0A1B0GUL6 1792 aa18.85■□□□□ 0.61
LIMS3-204ENST00000482065 ASTN2O75129 1339 aaPredicted RBP18.84■□□□□ 0.61
LIMS3-204ENST00000482065 PTPRCP08575 1304 aa18.84■□□□□ 0.61
LIMS3-204ENST00000482065 TAF5LO75529 589 aa18.84■□□□□ 0.61
LIMS3-204ENST00000482065 NBPF7P0C2Y1 421 aaPredicted RBP18.84■□□□□ 0.61
LIMS3-204ENST00000482065 KCNJ4P48050 445 aa18.84■□□□□ 0.61
LIMS3-204ENST00000482065 COL13A1Q5TAT6 717 aaPredicted RBP18.84■□□□□ 0.61
LIMS3-204ENST00000482065 PAXIP1Q6ZW49 1069 aaPredicted RBP18.84■□□□□ 0.61
LIMS3-204ENST00000482065 TRMT2AQ8IZ69 625 aaKnown RBP18.84■□□□□ 0.61
LIMS3-204ENST00000482065 AGBL3Q8NEM8 1001 aa18.84■□□□□ 0.61
LIMS3-204ENST00000482065 HELBQ8NG08 1087 aaPredicted RBP18.84■□□□□ 0.61
LIMS3-204ENST00000482065 FBXW7Q969H0 707 aa18.84■□□□□ 0.61
LIMS3-204ENST00000482065 KAZALD1Q96I82 304 aa18.84■□□□□ 0.61
LIMS3-204ENST00000482065 GMLQ99445 158 aa18.84■□□□□ 0.61
LIMS3-204ENST00000482065 COA1Q9GZY4 146 aa18.84■□□□□ 0.61
LIMS3-204ENST00000482065 TLL2Q9Y6L7 1015 aa18.84■□□□□ 0.61
LIMS3-204ENST00000482065 POLR2AP24928 1970 aaKnown RBP18.84■□□□□ 0.61
LIMS3-204ENST00000482065 ZNF646O15015 1829 aaPredicted RBP18.84■□□□□ 0.61
LIMS3-204ENST00000482065 WDR33Q9C0J8 1336 aaKnown RBP18.83■□□□□ 0.61
LIMS3-204ENST00000482065 ZNF280AP59817 542 aaPredicted RBP18.83■□□□□ 0.6
LIMS3-204ENST00000482065 CCDC57Q2TAC2 916 aa18.83■□□□□ 0.6
LIMS3-204ENST00000482065 TAF7LQ5H9L4 462 aa18.83■□□□□ 0.6
LIMS3-204ENST00000482065 IFFO2Q5TF58 517 aa18.83■□□□□ 0.6
LIMS3-204ENST00000482065 ADM5C9JUS6 153 aa18.82■□□□□ 0.6
LIMS3-204ENST00000482065 GRM1Q13255 1194 aa18.82■□□□□ 0.6
LIMS3-204ENST00000482065 DACT2Q5SW24 774 aa18.82■□□□□ 0.6
LIMS3-204ENST00000482065 CYP4F22Q6NT55 531 aa18.82■□□□□ 0.6
LIMS3-204ENST00000482065 KRT26Q7Z3Y9 468 aa18.82■□□□□ 0.6
LIMS3-204ENST00000482065 GGA3Q9NZ52 723 aa18.82■□□□□ 0.6
LIMS3-204ENST00000482065 UTYO14607 1347 aa18.81■□□□□ 0.6
LIMS3-204ENST00000482065 USP17L8P0C7I0 530 aa18.81■□□□□ 0.6
LIMS3-204ENST00000482065 ALDH1L2Q3SY69 923 aa18.81■□□□□ 0.6
LIMS3-204ENST00000482065 DCPSQ96C86 337 aaKnown RBP18.81■□□□□ 0.6
LIMS3-204ENST00000482065 CAPNS2Q96L46 248 aa18.81■□□□□ 0.6
LIMS3-204ENST00000482065 SMC4Q9NTJ3 1288 aa18.81■□□□□ 0.6
LIMS3-204ENST00000482065 IRS2Q9Y4H2 1338 aa18.8■□□□□ 0.6
LIMS3-204ENST00000482065 FOXN1O15353 648 aa18.8■□□□□ 0.6
LIMS3-204ENST00000482065 LDHAL6AQ6ZMR3 332 aa18.8■□□□□ 0.6
LIMS3-204ENST00000482065 SAPCD2Q86UD0 394 aa18.8■□□□□ 0.6
LIMS3-204ENST00000482065 BICC1Q9H694 974 aaKnown RBP18.8■□□□□ 0.6
LIMS3-204ENST00000482065 MYOZ2Q9NPC6 264 aa18.8■□□□□ 0.6
LIMS3-204ENST00000482065 CNNM1Q9NRU3 951 aa18.8■□□□□ 0.6
LIMS3-204ENST00000482065 PLIN1O60240 522 aa18.79■□□□□ 0.6
LIMS3-204ENST00000482065 SCARF1Q14162 830 aa18.79■□□□□ 0.6
LIMS3-204ENST00000482065 STRIP1Q5VSL9 837 aa18.79■□□□□ 0.6
LIMS3-204ENST00000482065 CD209Q9NNX6 404 aa18.79■□□□□ 0.6
LIMS3-204ENST00000482065 ECE1P42892 770 aa18.78■□□□□ 0.6
LIMS3-204ENST00000482065 GTF2IP78347 998 aa18.78■□□□□ 0.6
LIMS3-204ENST00000482065 ANGEL2Q5VTE6 544 aaKnown RBP18.78■□□□□ 0.6
LIMS3-204ENST00000482065 TTLL5Q6EMB2 1281 aa18.78■□□□□ 0.6
LIMS3-204ENST00000482065 PUS3Q9BZE2 481 aaKnown RBP18.78■□□□□ 0.6
LIMS3-204ENST00000482065 THSD7BQ9C0I4 1608 aa18.78■□□□□ 0.6
LIMS3-204ENST00000482065 C15orf52Q6ZUT6 534 aaKnown RBP18.77■□□□□ 0.6
LIMS3-204ENST00000482065 SULF1Q8IWU6 871 aa18.77■□□□□ 0.6
LIMS3-204ENST00000482065 ANKRD44Q8N8A2 993 aa18.77■□□□□ 0.6
LIMS3-204ENST00000482065 AIDAQ96BJ3 306 aa18.77■□□□□ 0.6
LIMS3-204ENST00000482065 WBP1LQ9NX94 342 aa18.77■□□□□ 0.6
LIMS3-204ENST00000482065 MYO3BQ8WXR4 1341 aa18.76■□□□□ 0.59
LIMS3-204ENST00000482065 AOC2O75106 756 aa18.76■□□□□ 0.59
LIMS3-204ENST00000482065 RABL6Q3YEC7 729 aaPredicted RBP18.76■□□□□ 0.59
LIMS3-204ENST00000482065 USP44Q9H0E7 712 aa18.76■□□□□ 0.59
LIMS3-204ENST00000482065 SCAF8Q9UPN6 1271 aaKnown RBP18.76■□□□□ 0.59
LIMS3-204ENST00000482065 CT47B1P0C2W7 299 aaPredicted RBP18.75■□□□□ 0.59
LIMS3-204ENST00000482065 NBPF9Q3BBW0 867 aa18.75■□□□□ 0.59
LIMS3-204ENST00000482065 KIAA0825Q8IV33 1275 aa18.75■□□□□ 0.59
LIMS3-204ENST00000482065 MIER1Q8N108 512 aa18.75■□□□□ 0.59
LIMS3-204ENST00000482065 NOB1Q9ULX3 412 aaKnown RBP18.75■□□□□ 0.59
LIMS3-204ENST00000482065 HUNKP57058 714 aa18.74■□□□□ 0.59
LIMS3-204ENST00000482065 ZNF804AQ7Z570 1209 aa18.74■□□□□ 0.59
LIMS3-204ENST00000482065 OGFOD1Q8N543 542 aa18.74■□□□□ 0.59
LIMS3-204ENST00000482065 CDCA5Q96FF9 252 aa18.74■□□□□ 0.59
LIMS3-204ENST00000482065 HHIPL1Q96JK4 782 aa18.74■□□□□ 0.59
LIMS3-204ENST00000482065 GBA2Q9HCG7 927 aaPredicted RBP18.74■□□□□ 0.59
LIMS3-204ENST00000482065 SASH1O94885 1247 aa18.73■□□□□ 0.59
LIMS3-204ENST00000482065 CTCFP49711 727 aaPredicted RBP18.73■□□□□ 0.59
LIMS3-204ENST00000482065 MAP2K1Q02750 393 aaPredicted RBP18.73■□□□□ 0.59
LIMS3-204ENST00000482065 LRRC24Q50LG9 513 aa18.73■□□□□ 0.59
LIMS3-204ENST00000482065 DIEXFQ68CQ4 756 aaKnown RBP18.73■□□□□ 0.59
LIMS3-204ENST00000482065 CERS5Q8N5B7 392 aa18.73■□□□□ 0.59
LIMS3-204ENST00000482065 KLHDC4Q8TBB5 520 aa18.73■□□□□ 0.59
LIMS3-204ENST00000482065 JAG2Q9Y219 1238 aa18.73■□□□□ 0.59
LIMS3-204ENST00000482065 RIPOR2Q9Y4F9 1068 aa18.73■□□□□ 0.59
LIMS3-204ENST00000482065 WNT10BO00744 389 aa18.72■□□□□ 0.59
LIMS3-204ENST00000482065 IL1R1P14778 569 aa18.72■□□□□ 0.59
LIMS3-204ENST00000482065 RARSP54136 660 aaKnown RBP18.72■□□□□ 0.59
LIMS3-204ENST00000482065 TNS4Q8IZW8 715 aa18.72■□□□□ 0.59
LIMS3-204ENST00000482065 C2orf69Q8N8R5 385 aa18.72■□□□□ 0.59
LIMS3-204ENST00000482065 PITPNM2Q9BZ72 1349 aa18.72■□□□□ 0.59
LIMS3-204ENST00000482065 GYG1P46976 350 aa18.71■□□□□ 0.59
LIMS3-204ENST00000482065 BRPF1P55201 1214 aaPredicted RBP18.71■□□□□ 0.59
LIMS3-204ENST00000482065 UBE4AQ14139 1066 aa18.71■□□□□ 0.59
LIMS3-204ENST00000482065 HDAC9Q9UKV0 1011 aa18.71■□□□□ 0.59
LIMS3-204ENST00000482065 MROH5Q6ZUA9 1318 aa18.71■□□□□ 0.59
LIMS3-204ENST00000482065 F8W031 263 aaPredicted RBP18.7■□□□□ 0.58
LIMS3-204ENST00000482065 HSPA8P11142 646 aaKnown RBP18.7■□□□□ 0.58
LIMS3-204ENST00000482065 MAP2K2P36507 400 aa18.7■□□□□ 0.58
LIMS3-204ENST00000482065 LBX1P52954 281 aa18.7■□□□□ 0.58
LIMS3-204ENST00000482065 PRAMEF18Q5VWM3 479 aa18.7■□□□□ 0.58
LIMS3-204ENST00000482065 API5Q9BZZ5 524 aaKnown RBP18.7■□□□□ 0.58
LIMS3-204ENST00000482065 METTL24Q5JXM2 366 aa18.69■□□□□ 0.58
Retrieved 100 of 20,778 RNA–protein pairs in 35 ms