RNA–Protein interactions for RNA: ENST00000481502.5

SYNE1-225, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 3

Gene SYNE1, Length 585 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-225ENST00000481502 A0A0G2JLW4 131 aa10.09□□□□□ -0.79
SYNE1-225ENST00000481502 CHRNA5P30532 468 aa10.09□□□□□ -0.79
SYNE1-225ENST00000481502 KCNJ4P48050 445 aa10.09□□□□□ -0.79
SYNE1-225ENST00000481502 CCDC93Q567U6 631 aa10.09□□□□□ -0.79
SYNE1-225ENST00000481502 XAGE2Q96GT9 111 aa10.09□□□□□ -0.79
SYNE1-225ENST00000481502 NEUROD6Q96NK8 337 aa10.09□□□□□ -0.79
SYNE1-225ENST00000481502 DBNLQ9UJU6 430 aaKnown RBP10.09□□□□□ -0.79
SYNE1-225ENST00000481502 NSFL1CQ9UNZ2 370 aaKnown RBP10.09□□□□□ -0.79
SYNE1-225ENST00000481502 MED23Q9ULK4 1368 aa10.09□□□□□ -0.79
SYNE1-225ENST00000481502 LTBP3Q9NS15 1303 aa10.08□□□□□ -0.8
SYNE1-225ENST00000481502 APBB1O00213 710 aa10.08□□□□□ -0.8
SYNE1-225ENST00000481502 SMARCA5O60264 1052 aaPredicted RBP10.08□□□□□ -0.8
SYNE1-225ENST00000481502 PDE4AP27815 886 aa10.08□□□□□ -0.8
SYNE1-225ENST00000481502 ARID4AP29374 1257 aaPredicted RBP10.08□□□□□ -0.8
SYNE1-225ENST00000481502 TIMM10P62072 90 aa10.08□□□□□ -0.8
SYNE1-225ENST00000481502 LRRFIP1Q32MZ4 808 aaKnown RBP10.08□□□□□ -0.8
SYNE1-225ENST00000481502 GORABQ5T7V8 394 aa10.08□□□□□ -0.8
SYNE1-225ENST00000481502 DPP8Q6V1X1 898 aaPredicted RBP10.08□□□□□ -0.8
SYNE1-225ENST00000481502 FBXO33Q7Z6M2 555 aa10.08□□□□□ -0.8
SYNE1-225ENST00000481502 TBC1D16Q8TBP0 767 aa10.08□□□□□ -0.8
SYNE1-225ENST00000481502 SYT17Q9BSW7 474 aa10.08□□□□□ -0.8
SYNE1-225ENST00000481502 PPP1R1BQ9UD71 204 aaPredicted RBP10.08□□□□□ -0.8
SYNE1-225ENST00000481502 IRS2Q9Y4H2 1338 aa10.07□□□□□ -0.8
SYNE1-225ENST00000481502 SNED1Q8TER0 1413 aa10.07□□□□□ -0.8
SYNE1-225ENST00000481502 COL11A2P13942 1736 aaPredicted RBP10.07□□□□□ -0.8
SYNE1-225ENST00000481502 TAF5LO75529 589 aa10.07□□□□□ -0.8
SYNE1-225ENST00000481502 HIBADHP31937 336 aaKnown RBP10.07□□□□□ -0.8
SYNE1-225ENST00000481502 GPSM2P81274 684 aa10.07□□□□□ -0.8
SYNE1-225ENST00000481502 TTF1Q15361 905 aaPredicted RBP10.07□□□□□ -0.8
SYNE1-225ENST00000481502 CCDC102BQ68D86 513 aa10.07□□□□□ -0.8
SYNE1-225ENST00000481502 ZNF804AQ7Z570 1209 aa10.07□□□□□ -0.8
SYNE1-225ENST00000481502 PODNQ7Z5L7 613 aa10.07□□□□□ -0.8
SYNE1-225ENST00000481502 C16orf71Q8IYS4 520 aaPredicted RBP10.07□□□□□ -0.8
SYNE1-225ENST00000481502 PI4K2BQ8TCG2 481 aa10.07□□□□□ -0.8
SYNE1-225ENST00000481502 FAM84BQ96KN1 310 aaPredicted RBP10.07□□□□□ -0.8
SYNE1-225ENST00000481502 DBNDD2Q9BQY9 259 aa10.07□□□□□ -0.8
SYNE1-225ENST00000481502 ZC3H12CQ9C0D7 883 aaKnown RBP10.07□□□□□ -0.8
SYNE1-225ENST00000481502 COA1Q9GZY4 146 aa10.07□□□□□ -0.8
SYNE1-225ENST00000481502 CCDC8Q9H0W5 538 aaPredicted RBP10.07□□□□□ -0.8
SYNE1-225ENST00000481502 MYCNP04198 464 aaPredicted RBP10.06□□□□□ -0.8
SYNE1-225ENST00000481502 IL1R1P14778 569 aa10.06□□□□□ -0.8
SYNE1-225ENST00000481502 MMP14P50281 582 aa10.06□□□□□ -0.8
SYNE1-225ENST00000481502 FKBP4Q02790 459 aaKnown RBP eCLIP10.06□□□□□ -0.8
SYNE1-225ENST00000481502 WASHC4Q2M389 1173 aa10.06□□□□□ -0.8
SYNE1-225ENST00000481502 TTC39AQ5SRH9 613 aa10.06□□□□□ -0.8
SYNE1-225ENST00000481502 TTC22Q5TAA0 569 aa10.06□□□□□ -0.8
SYNE1-225ENST00000481502 VPS37DQ86XT2 251 aa10.06□□□□□ -0.8
SYNE1-225ENST00000481502 HELBQ8NG08 1087 aaPredicted RBP10.06□□□□□ -0.8
SYNE1-225ENST00000481502 EVI5LQ96CN4 794 aa10.06□□□□□ -0.8
SYNE1-225ENST00000481502 HAUS7Q99871 368 aa10.06□□□□□ -0.8
SYNE1-225ENST00000481502 FHDC1Q9C0D6 1143 aaPredicted RBP10.06□□□□□ -0.8
SYNE1-225ENST00000481502 POLLQ9UGP5 575 aa10.06□□□□□ -0.8
SYNE1-225ENST00000481502 DENND2AQ9ULE3 1009 aa10.06□□□□□ -0.8
SYNE1-225ENST00000481502 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP10.06□□□□□ -0.8
SYNE1-225ENST00000481502 KIAA1551Q9HCM1 1747 aa10.06□□□□□ -0.8
SYNE1-225ENST00000481502 RFX7Q2KHR2 1363 aa10.05□□□□□ -0.8
SYNE1-225ENST00000481502 C6orf229H3BNL8 230 aa10.05□□□□□ -0.8
SYNE1-225ENST00000481502 HIP1O00291 1037 aa10.05□□□□□ -0.8
SYNE1-225ENST00000481502 C21orf2O43822 256 aa10.05□□□□□ -0.8
SYNE1-225ENST00000481502 UFL1O94874 794 aa10.05□□□□□ -0.8
SYNE1-225ENST00000481502 KIAA2012Q0VF49 1180 aa10.05□□□□□ -0.8
SYNE1-225ENST00000481502 CNTROBQ8N137 903 aa10.05□□□□□ -0.8
SYNE1-225ENST00000481502 ZGPATQ8N5A5 531 aaKnown RBP10.05□□□□□ -0.8
SYNE1-225ENST00000481502 TDRD7Q8NHU6 1098 aaKnown RBP10.05□□□□□ -0.8
SYNE1-225ENST00000481502 SUGT1Q9Y2Z0 365 aa10.05□□□□□ -0.8
SYNE1-225ENST00000481502 SLX4Q8IY92 1834 aa10.05□□□□□ -0.8
SYNE1-225ENST00000481502 SALL1Q9NSC2 1324 aa10.05□□□□□ -0.8
SYNE1-225ENST00000481502 LTBP1Q14766 1721 aa10.04□□□□□ -0.8
SYNE1-225ENST00000481502 BRCA1P38398 1863 aaKnown RBP10.04□□□□□ -0.8
SYNE1-225ENST00000481502 RGS3P49796 1198 aa10.04□□□□□ -0.8
SYNE1-225ENST00000481502 FKBP1AP62942 108 aaKnown RBP10.04□□□□□ -0.8
SYNE1-225ENST00000481502 WDR66Q8TBY9 1149 aa10.04□□□□□ -0.8
SYNE1-225ENST00000481502 TBC1D22AQ8WUA7 517 aa10.04□□□□□ -0.8
SYNE1-225ENST00000481502 CD209Q9NNX6 404 aa10.04□□□□□ -0.8
SYNE1-225ENST00000481502 ARAP2Q8WZ64 1704 aa10.04□□□□□ -0.8
SYNE1-225ENST00000481502 TAF1P21675 1872 aa10.04□□□□□ -0.8
SYNE1-225ENST00000481502 FAM205AQ6ZU69 1335 aa10.04□□□□□ -0.8
SYNE1-225ENST00000481502 COL4A1P02462 1669 aa10.03□□□□□ -0.8
SYNE1-225ENST00000481502 SPEF2Q9C093 1822 aa10.03□□□□□ -0.8
SYNE1-225ENST00000481502 GRIN3BO60391 1043 aa10.03□□□□□ -0.8
SYNE1-225ENST00000481502 ZFYP08048 801 aaPredicted RBP10.03□□□□□ -0.8
SYNE1-225ENST00000481502 BCAMP50895 628 aa10.03□□□□□ -0.8
SYNE1-225ENST00000481502 SPTY2D1Q68D10 685 aaPredicted RBP10.03□□□□□ -0.8
SYNE1-225ENST00000481502 ZSCAN25Q6NSZ9 544 aa10.03□□□□□ -0.8
SYNE1-225ENST00000481502 SPATA5Q8NB90 893 aa10.03□□□□□ -0.8
SYNE1-225ENST00000481502 OTUD7AQ8TE49 926 aaPredicted RBP10.03□□□□□ -0.8
SYNE1-225ENST00000481502 TAOK3Q9H2K8 898 aa10.03□□□□□ -0.8
SYNE1-225ENST00000481502 TLR7Q9NYK1 1049 aaKnown RBP10.03□□□□□ -0.8
SYNE1-225ENST00000481502 BCS1LQ9Y276 419 aa10.03□□□□□ -0.8
SYNE1-225ENST00000481502 A0A1B0GUL6 1792 aa10.03□□□□□ -0.8
SYNE1-225ENST00000481502 ARFGEF1Q9Y6D6 1849 aa10.03□□□□□ -0.8
SYNE1-225ENST00000481502 EPB41L2O43491 1005 aaKnown RBP10.02□□□□□ -0.81
SYNE1-225ENST00000481502 ADORA1P30542 326 aa10.02□□□□□ -0.81
SYNE1-225ENST00000481502 PHKA1P46020 1223 aa10.02□□□□□ -0.81
SYNE1-225ENST00000481502 CASC1Q6TDU7 716 aa10.02□□□□□ -0.81
SYNE1-225ENST00000481502 KLHL34Q8N239 644 aa10.02□□□□□ -0.81
SYNE1-225ENST00000481502 KBTBD3Q8NAB2 608 aa10.02□□□□□ -0.81
SYNE1-225ENST00000481502 NLGN2Q8NFZ4 835 aa10.02□□□□□ -0.81
SYNE1-225ENST00000481502 MRIQ9BWK5 157 aa10.02□□□□□ -0.81
SYNE1-225ENST00000481502 PAG1Q9NWQ8 432 aa10.02□□□□□ -0.81
Retrieved 100 of 20,778 RNA–protein pairs in 25.9 ms