RNA–Protein interactions for RNA: ENST00000481131.5

UPF3A-207, Transcript of UPF3A, regulator of nonsense mediated mRNA decay, humanhuman

TSL 3

Gene UPF3A, Length 678 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3A-207ENST00000481131 ZNF76P36508 570 aa8.44□□□□□ -1.06
UPF3A-207ENST00000481131 NEUROD1Q13562 356 aa8.44□□□□□ -1.06
UPF3A-207ENST00000481131 HFE2Q6ZVN8 426 aa8.44□□□□□ -1.06
UPF3A-207ENST00000481131 IGFLR1Q9H665 355 aa8.44□□□□□ -1.06
UPF3A-207ENST00000481131 LIN7BQ9HAP6 207 aa8.44□□□□□ -1.06
UPF3A-207ENST00000481131 USP31Q70CQ4 1352 aa8.44□□□□□ -1.06
UPF3A-207ENST00000481131 LOC102724428A0A0B4J2F2 783 aa8.43□□□□□ -1.06
UPF3A-207ENST00000481131 SIN3BO75182 1162 aa8.43□□□□□ -1.06
UPF3A-207ENST00000481131 SIK1P57059 783 aa8.43□□□□□ -1.06
UPF3A-207ENST00000481131 ATP11AP98196 1134 aa8.43□□□□□ -1.06
UPF3A-207ENST00000481131 NT5DC4Q86YG4 428 aa8.43□□□□□ -1.06
UPF3A-207ENST00000481131 CCNJLQ8IV13 435 aa8.43□□□□□ -1.06
UPF3A-207ENST00000481131 TMEM151AQ8N4L1 468 aa8.43□□□□□ -1.06
UPF3A-207ENST00000481131 RNF34Q969K3 372 aa8.43□□□□□ -1.06
UPF3A-207ENST00000481131 MDFIQ99750 246 aa8.43□□□□□ -1.06
UPF3A-207ENST00000481131 METTL12A8MUP2 240 aa8.42□□□□□ -1.06
UPF3A-207ENST00000481131 GDF11O95390 407 aa8.42□□□□□ -1.06
UPF3A-207ENST00000481131 ERCC5P28715 1186 aaPredicted RBP8.42□□□□□ -1.06
UPF3A-207ENST00000481131 TBC1D8BQ0IIM8 1120 aa8.42□□□□□ -1.06
UPF3A-207ENST00000481131 UBE2OQ9C0C9 1292 aaKnown RBP8.42□□□□□ -1.06
UPF3A-207ENST00000481131 RASSF4Q9H2L5 321 aa8.42□□□□□ -1.06
UPF3A-207ENST00000481131 TRAK1Q9UPV9 953 aa8.42□□□□□ -1.06
UPF3A-207ENST00000481131 TMEM238LA0A1B0GVL6 79 aa8.41□□□□□ -1.06
UPF3A-207ENST00000481131 GSTT1P30711 240 aa8.41□□□□□ -1.06
UPF3A-207ENST00000481131 GRIA4P48058 902 aa8.41□□□□□ -1.06
UPF3A-207ENST00000481131 ST13P50502 369 aaKnown RBP8.41□□□□□ -1.06
UPF3A-207ENST00000481131 FCGRTP55899 365 aa8.41□□□□□ -1.06
UPF3A-207ENST00000481131 TAF1CQ15572 869 aaPredicted RBP8.41□□□□□ -1.06
UPF3A-207ENST00000481131 TNFRSF25Q93038 417 aa8.41□□□□□ -1.06
UPF3A-207ENST00000481131 BHLHE41Q9C0J9 482 aaPredicted RBP8.41□□□□□ -1.06
UPF3A-207ENST00000481131 AVENQ9NQS1 362 aaPredicted RBP8.41□□□□□ -1.06
UPF3A-207ENST00000481131 NAGPAQ9UK23 515 aa8.41□□□□□ -1.06
UPF3A-207ENST00000481131 ARAFP10398 606 aa8.4□□□□□ -1.06
UPF3A-207ENST00000481131 MAP3K10Q02779 954 aa8.4□□□□□ -1.06
UPF3A-207ENST00000481131 SPRED3Q2MJR0 410 aa8.4□□□□□ -1.06
UPF3A-207ENST00000481131 ADAMTSL4Q6UY14 1074 aa8.4□□□□□ -1.06
UPF3A-207ENST00000481131 FCHSD1Q86WN1 690 aa8.4□□□□□ -1.06
UPF3A-207ENST00000481131 TMEM102Q8N9M5 508 aaPredicted RBP8.4□□□□□ -1.06
UPF3A-207ENST00000481131 NXPE3Q969Y0 559 aa8.4□□□□□ -1.06
UPF3A-207ENST00000481131 OXCT2Q9BYC2 517 aaPredicted RBP8.4□□□□□ -1.06
UPF3A-207ENST00000481131 PBX4Q9BYU1 374 aa8.4□□□□□ -1.06
UPF3A-207ENST00000481131 SLC6A14Q9UN76 642 aa8.4□□□□□ -1.06
UPF3A-207ENST00000481131 SHISA8B8ZZ34 492 aa8.39□□□□□ -1.07
UPF3A-207ENST00000481131 RNF225M0QZC1 329 aaPredicted RBP8.39□□□□□ -1.07
UPF3A-207ENST00000481131 IGSF3O75054 1194 aa8.39□□□□□ -1.07
UPF3A-207ENST00000481131 PTPN12Q05209 780 aaKnown RBP8.39□□□□□ -1.07
UPF3A-207ENST00000481131 SUZ12Q15022 739 aaKnown RBP8.39□□□□□ -1.07
UPF3A-207ENST00000481131 C8orf37Q96NL8 207 aa8.39□□□□□ -1.07
UPF3A-207ENST00000481131 ADARB2-AS1A8MUL3 147 aa8.38□□□□□ -1.07
UPF3A-207ENST00000481131 PDE2AO00408 941 aaPredicted RBP8.38□□□□□ -1.07
UPF3A-207ENST00000481131 BCRP11274 1271 aa8.38□□□□□ -1.07
UPF3A-207ENST00000481131 CPB1P15086 417 aa8.38□□□□□ -1.07
UPF3A-207ENST00000481131 ADH6P28332 368 aa8.38□□□□□ -1.07
UPF3A-207ENST00000481131 ADH7P40394 386 aa8.38□□□□□ -1.07
UPF3A-207ENST00000481131 ZC3H6P61129 1189 aaKnown RBP8.38□□□□□ -1.07
UPF3A-207ENST00000481131 ZNF394Q53GI3 561 aa8.38□□□□□ -1.07
UPF3A-207ENST00000481131 PERM1Q5SV97 790 aa8.38□□□□□ -1.07
UPF3A-207ENST00000481131 FAM35AQ86V20 835 aa8.38□□□□□ -1.07
UPF3A-207ENST00000481131 SPACA7Q96KW9 195 aa8.38□□□□□ -1.07
UPF3A-207ENST00000481131 NEURL1BA8MQ27 555 aa8.37□□□□□ -1.07
UPF3A-207ENST00000481131 EIF2AK2P19525 551 aaKnown RBP8.37□□□□□ -1.07
UPF3A-207ENST00000481131 ITPKAP23677 461 aa8.37□□□□□ -1.07
UPF3A-207ENST00000481131 RACK1P63244 317 aaKnown RBP8.37□□□□□ -1.07
UPF3A-207ENST00000481131 DTHD1Q6ZMT9 781 aa8.37□□□□□ -1.07
UPF3A-207ENST00000481131 POP1Q99575 1024 aaKnown RBP8.37□□□□□ -1.07
UPF3A-207ENST00000481131 PPP4R2Q9NY27 417 aa8.37□□□□□ -1.07
UPF3A-207ENST00000481131 TTF2Q9UNY4 1162 aaKnown RBP8.37□□□□□ -1.07
UPF3A-207ENST00000481131 PCDHGB7Q9Y5F8 929 aa8.37□□□□□ -1.07
UPF3A-207ENST00000481131 CNTNAP5Q8WYK1 1306 aa8.36□□□□□ -1.07
UPF3A-207ENST00000481131 FBXO24O75426 580 aa8.36□□□□□ -1.07
UPF3A-207ENST00000481131 GHRHP01286 108 aa8.36□□□□□ -1.07
UPF3A-207ENST00000481131 XRCC5P13010 732 aaKnown RBP8.36□□□□□ -1.07
UPF3A-207ENST00000481131 MAP2K3P46734 347 aa8.36□□□□□ -1.07
UPF3A-207ENST00000481131 PCSK7Q16549 785 aa8.36□□□□□ -1.07
UPF3A-207ENST00000481131 ERMP1Q7Z2K6 904 aa8.36□□□□□ -1.07
UPF3A-207ENST00000481131 ANKRD24Q8TF21 1146 aa8.36□□□□□ -1.07
UPF3A-207ENST00000481131 PLD4Q96BZ4 506 aa8.36□□□□□ -1.07
UPF3A-207ENST00000481131 TGIF2Q9GZN2 237 aa8.36□□□□□ -1.07
UPF3A-207ENST00000481131 SRA1Q9HD15 236 aaKnown RBP8.36□□□□□ -1.07
UPF3A-207ENST00000481131 COPRSQ9NQ92 184 aa8.36□□□□□ -1.07
UPF3A-207ENST00000481131 DDX41Q9UJV9 622 aaKnown RBP8.36□□□□□ -1.07
UPF3A-207ENST00000481131 GGA1Q9UJY5 639 aa8.36□□□□□ -1.07
UPF3A-207ENST00000481131 PPM1HQ9ULR3 514 aa8.36□□□□□ -1.07
UPF3A-207ENST00000481131 AKAP2Q9Y2D5 859 aa8.36□□□□□ -1.07
UPF3A-207ENST00000481131 A0A096LPE4 126 aa8.35□□□□□ -1.07
UPF3A-207ENST00000481131 A0A1W2PPZ6 126 aa8.35□□□□□ -1.07
UPF3A-207ENST00000481131 OIP5O43482 229 aa8.35□□□□□ -1.07
UPF3A-207ENST00000481131 NAALADL2Q58DX5 795 aa8.35□□□□□ -1.07
UPF3A-207ENST00000481131 CEP135Q66GS9 1140 aa8.35□□□□□ -1.07
UPF3A-207ENST00000481131 HS2ST1Q7LGA3 356 aa8.35□□□□□ -1.07
UPF3A-207ENST00000481131 ASAP3Q8TDY4 903 aa8.35□□□□□ -1.07
UPF3A-207ENST00000481131 LPIN3Q9BQK8 851 aa8.35□□□□□ -1.07
UPF3A-207ENST00000481131 TRIM56Q9BRZ2 755 aaKnown RBP8.35□□□□□ -1.07
UPF3A-207ENST00000481131 MUC3BQ9H195 1237 aa8.35□□□□□ -1.07
UPF3A-207ENST00000481131 ACBD3Q9H3P7 528 aa8.35□□□□□ -1.07
UPF3A-207ENST00000481131 GGT7Q9UJ14 662 aa8.35□□□□□ -1.07
UPF3A-207ENST00000481131 SNRPNP63162 240 aaKnown RBP8.34□□□□□ -1.07
UPF3A-207ENST00000481131 FAAP100Q0VG06 881 aa8.34□□□□□ -1.07
UPF3A-207ENST00000481131 TPTE2Q6XPS3 522 aa8.34□□□□□ -1.07
UPF3A-207ENST00000481131 NOC4LQ9BVI4 516 aaKnown RBP8.34□□□□□ -1.07
Retrieved 100 of 20,778 RNA–protein pairs in 70.1 ms