RNA–Protein interactions for RNA: ENST00000479868.6

SEC13-216, Transcript of SEC13 homolog, nuclear pore and COPII coat complex component, humanhuman

TSL 1 (best)

Gene SEC13, Length 2,374 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SEC13-216ENST00000479868 MYH7P12883 1935 aa15.46■□□□□ 0.07
SEC13-216ENST00000479868 FAM177BA6PVY3 158 aa15.46■□□□□ 0.07
SEC13-216ENST00000479868 MCAMP43121 646 aa15.46■□□□□ 0.07
SEC13-216ENST00000479868 LARP1BQ659C4 914 aaKnown RBP15.46■□□□□ 0.07
SEC13-216ENST00000479868 BARGINQ6ZT62 677 aa15.46■□□□□ 0.07
SEC13-216ENST00000479868 RREB1Q92766 1687 aa15.46■□□□□ 0.07
SEC13-216ENST00000479868 KCNQ2O43526 872 aa15.46■□□□□ 0.06
SEC13-216ENST00000479868 HCLS1P14317 486 aaPredicted RBP15.46■□□□□ 0.06
SEC13-216ENST00000479868 NASPP49321 788 aaPredicted RBP15.46■□□□□ 0.06
SEC13-216ENST00000479868 ATP6V1DQ9Y5K8 247 aa15.46■□□□□ 0.06
SEC13-216ENST00000479868 FOXP2O15409 715 aa15.45■□□□□ 0.06
SEC13-216ENST00000479868 CAMTA2O94983 1202 aa15.45■□□□□ 0.06
SEC13-216ENST00000479868 PDE8BO95263 885 aa15.45■□□□□ 0.06
SEC13-216ENST00000479868 DNM1Q05193 864 aaKnown RBP15.45■□□□□ 0.06
SEC13-216ENST00000479868 WASHC4Q2M389 1173 aa15.45■□□□□ 0.06
SEC13-216ENST00000479868 ABCC12Q96J65 1359 aa15.45■□□□□ 0.06
SEC13-216ENST00000479868 LRP5O75197 1615 aa15.45■□□□□ 0.06
SEC13-216ENST00000479868 TTLL5Q6EMB2 1281 aa15.44■□□□□ 0.06
SEC13-216ENST00000479868 LRSAM1Q6UWE0 723 aa15.44■□□□□ 0.06
SEC13-216ENST00000479868 CDC37L1Q7L3B6 337 aa15.44■□□□□ 0.06
SEC13-216ENST00000479868 UBE2Q2Q8WVN8 375 aa15.44■□□□□ 0.06
SEC13-216ENST00000479868 BRF1Q92994 677 aa15.44■□□□□ 0.06
SEC13-216ENST00000479868 GTF3C6Q969F1 213 aa15.44■□□□□ 0.06
SEC13-216ENST00000479868 RBSNQ9H1K0 784 aa15.44■□□□□ 0.06
SEC13-216ENST00000479868 MYO5AQ9Y4I1 1855 aaKnown RBP15.44■□□□□ 0.06
SEC13-216ENST00000479868 E7EWF7 191 aa15.44■□□□□ 0.06
SEC13-216ENST00000479868 FIBPO43427 364 aa15.44■□□□□ 0.06
SEC13-216ENST00000479868 ZFYP08048 801 aaPredicted RBP15.44■□□□□ 0.06
SEC13-216ENST00000479868 LRRFIP1Q32MZ4 808 aaKnown RBP15.44■□□□□ 0.06
SEC13-216ENST00000479868 DHX32Q7L7V1 743 aaKnown RBP15.44■□□□□ 0.06
SEC13-216ENST00000479868 PUS7LQ9H0K6 701 aaKnown RBP15.44■□□□□ 0.06
SEC13-216ENST00000479868 CICQ96RK0 1608 aaPredicted RBP15.44■□□□□ 0.06
SEC13-216ENST00000479868 HMGB1P09429 215 aaKnown RBP15.43■□□□□ 0.06
SEC13-216ENST00000479868 HSP90B1P14625 803 aaKnown RBP15.43■□□□□ 0.06
SEC13-216ENST00000479868 FAM43AQ8N2R8 423 aa15.43■□□□□ 0.06
SEC13-216ENST00000479868 HELBQ8NG08 1087 aaPredicted RBP15.43■□□□□ 0.06
SEC13-216ENST00000479868 JAK2O60674 1132 aa15.43■□□□□ 0.06
SEC13-216ENST00000479868 UTP14AQ9BVJ6 771 aaKnown RBP15.43■□□□□ 0.06
SEC13-216ENST00000479868 DDX60Q8IY21 1712 aaKnown RBP15.43■□□□□ 0.06
SEC13-216ENST00000479868 PDCP20941 246 aa15.42■□□□□ 0.06
SEC13-216ENST00000479868 EXOSC10Q01780 885 aaKnown RBP15.42■□□□□ 0.06
SEC13-216ENST00000479868 TPRNQ4KMQ1 711 aa15.42■□□□□ 0.06
SEC13-216ENST00000479868 FERMT3Q86UX7 667 aa15.42■□□□□ 0.06
SEC13-216ENST00000479868 APPBP2Q92624 585 aa15.42■□□□□ 0.06
SEC13-216ENST00000479868 AK7Q96M32 723 aa15.42■□□□□ 0.06
SEC13-216ENST00000479868 TOM1O60784 492 aa15.42■□□□□ 0.06
SEC13-216ENST00000479868 PHKA1P46020 1223 aa15.42■□□□□ 0.06
SEC13-216ENST00000479868 FGD1P98174 961 aa15.42■□□□□ 0.06
SEC13-216ENST00000479868 FAM98CQ17RN3 349 aaKnown RBP15.42■□□□□ 0.06
SEC13-216ENST00000479868 ZNF512BQ96KM6 892 aaPredicted RBP15.42■□□□□ 0.06
SEC13-216ENST00000479868 SEC31BQ9NQW1 1179 aa15.42■□□□□ 0.06
SEC13-216ENST00000479868 SCRN1Q12765 414 aa15.41■□□□□ 0.06
SEC13-216ENST00000479868 CCDC102BQ68D86 513 aa15.41■□□□□ 0.06
SEC13-216ENST00000479868 COL5A3P25940 1745 aaPredicted RBP15.41■□□□□ 0.06
SEC13-216ENST00000479868 FGFR2P21802 821 aa15.41■□□□□ 0.06
SEC13-216ENST00000479868 UBE2HP62256 183 aa15.41■□□□□ 0.06
SEC13-216ENST00000479868 APOBRQ0VD83 1088 aa15.41■□□□□ 0.06
SEC13-216ENST00000479868 PUM3Q15397 648 aaKnown RBP15.41■□□□□ 0.06
SEC13-216ENST00000479868 CHST3Q7LGC8 479 aa15.41■□□□□ 0.06
SEC13-216ENST00000479868 SYAP1Q96A49 352 aaPredicted RBP15.41■□□□□ 0.06
SEC13-216ENST00000479868 AGXT2Q9BYV1 514 aa15.41■□□□□ 0.06
SEC13-216ENST00000479868 NIP7Q9Y221 180 aaKnown RBP eCLIP15.41■□□□□ 0.06
SEC13-216ENST00000479868 MROH5Q6ZUA9 1318 aa15.4■□□□□ 0.06
SEC13-216ENST00000479868 ARAP2Q8WZ64 1704 aa15.4■□□□□ 0.06
SEC13-216ENST00000479868 SNAP23O00161 211 aa15.4■□□□□ 0.06
SEC13-216ENST00000479868 NTSR2O95665 410 aa15.4■□□□□ 0.06
SEC13-216ENST00000479868 FGAP02671 866 aa15.4■□□□□ 0.06
SEC13-216ENST00000479868 PDIA4P13667 645 aaKnown RBP15.4■□□□□ 0.06
SEC13-216ENST00000479868 HAND2P61296 217 aa15.4■□□□□ 0.06
SEC13-216ENST00000479868 PARP10Q53GL7 1025 aa15.4■□□□□ 0.06
SEC13-216ENST00000479868 FAM173BQ6P4H8 233 aa15.4■□□□□ 0.06
SEC13-216ENST00000479868 RRAGDQ9NQL2 400 aaPredicted RBP15.4■□□□□ 0.06
SEC13-216ENST00000479868 PIH1D3Q9NQM4 214 aaKnown RBP15.4■□□□□ 0.06
SEC13-216ENST00000479868 GPAA1O43292 621 aa15.4■□□□□ 0.06
SEC13-216ENST00000479868 PFKFB2O60825 505 aa15.4■□□□□ 0.06
SEC13-216ENST00000479868 ARID4AP29374 1257 aaPredicted RBP15.4■□□□□ 0.06
SEC13-216ENST00000479868 LPIN2Q92539 896 aa15.4■□□□□ 0.06
SEC13-216ENST00000479868 SMARCC1Q92922 1105 aaPredicted RBP15.4■□□□□ 0.06
SEC13-216ENST00000479868 DDX24Q9GZR7 859 aaKnown RBP eCLIP15.4■□□□□ 0.065e-10■□□□□ 8.6
SEC13-216ENST00000479868 ADD2P35612 726 aa15.39■□□□□ 0.05
SEC13-216ENST00000479868 SLC9C2Q5TAH2 1124 aa15.39■□□□□ 0.05
SEC13-216ENST00000479868 KCNQ4P56696 695 aa15.39■□□□□ 0.05
SEC13-216ENST00000479868 DDX11Q96FC9 970 aa15.39■□□□□ 0.05
SEC13-216ENST00000479868 C8orf37Q96NL8 207 aa15.39■□□□□ 0.05
SEC13-216ENST00000479868 MPHOSPH8Q99549 860 aa15.39■□□□□ 0.05
SEC13-216ENST00000479868 CTNNA3Q9UI47 895 aa15.39■□□□□ 0.05
SEC13-216ENST00000479868 BCL9LQ86UU0 1499 aa15.38■□□□□ 0.05
SEC13-216ENST00000479868 IDH1O75874 414 aaKnown RBP15.38■□□□□ 0.05
SEC13-216ENST00000479868 TTF1Q15361 905 aaPredicted RBP15.38■□□□□ 0.05
SEC13-216ENST00000479868 IMMTQ16891 758 aaKnown RBP15.38■□□□□ 0.05
SEC13-216ENST00000479868 LAMB2P55268 1798 aa15.38■□□□□ 0.05
SEC13-216ENST00000479868 BCORQ6W2J9 1755 aa15.38■□□□□ 0.05
SEC13-216ENST00000479868 CCDC173Q0VFZ6 552 aa15.38■□□□□ 0.05
SEC13-216ENST00000479868 LINC00116Q8NCU8 138 aa15.38■□□□□ 0.05
SEC13-216ENST00000479868 SMARCC2Q8TAQ2 1214 aa15.38■□□□□ 0.05
SEC13-216ENST00000479868 PPP1R9BQ96SB3 815 aa15.38■□□□□ 0.05
SEC13-216ENST00000479868 CTDNEP1O95476 244 aa15.37■□□□□ 0.05
SEC13-216ENST00000479868 UQCRFS1P1P0C7P4 283 aa15.37■□□□□ 0.05
SEC13-216ENST00000479868 CCT2P78371 535 aaKnown RBP15.37■□□□□ 0.05
SEC13-216ENST00000479868 CSPP1Q1MSJ5 1256 aa15.37■□□□□ 0.05
Retrieved 100 of 20,778 RNA–protein pairs in 36.9 ms