RNA–Protein interactions for RNA: ENST00000477605.1

CCM2-209, Transcript of CCM2 scaffold protein, humanhuman

TSL 1 (best)

Gene CCM2, Length 2,050 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCM2-209ENST00000477605 ZNF396Q96N95 335 aaPredicted RBP21.27■□□□□ 0.99
CCM2-209ENST00000477605 LAMB4A4D0S4 1761 aa21.27■□□□□ 0.99
CCM2-209ENST00000477605 CDC25BP30305 580 aa21.26■□□□□ 0.99
CCM2-209ENST00000477605 CHAF1AQ13111 956 aaPredicted RBP21.26■□□□□ 0.99
CCM2-209ENST00000477605 TNS3Q68CZ2 1445 aa21.26■□□□□ 0.99
CCM2-209ENST00000477605 PARP4Q9UKK3 1724 aaKnown RBP21.26■□□□□ 0.99
CCM2-209ENST00000477605 AFDNP55196 1824 aaKnown RBP21.26■□□□□ 0.99
CCM2-209ENST00000477605 ADD1P35611 737 aaKnown RBP21.25■□□□□ 0.99
CCM2-209ENST00000477605 ZNF165P49910 485 aa21.25■□□□□ 0.99
CCM2-209ENST00000477605 ZNF75DP51815 510 aa21.25■□□□□ 0.99
CCM2-209ENST00000477605 PYCARDQ9ULZ3 195 aa21.25■□□□□ 0.99
CCM2-209ENST00000477605 GLI3P10071 1580 aa21.25■□□□□ 0.99
CCM2-209ENST00000477605 EYA2O00167 538 aa21.25■□□□□ 0.99
CCM2-209ENST00000477605 GOLIM4O00461 696 aa21.25■□□□□ 0.99
CCM2-209ENST00000477605 RNF113AO15541 343 aaKnown RBP21.25■□□□□ 0.99
CCM2-209ENST00000477605 SPC24Q8NBT2 197 aa21.25■□□□□ 0.99
CCM2-209ENST00000477605 NEUROD6Q96NK8 337 aa21.25■□□□□ 0.99
CCM2-209ENST00000477605 FBXO3Q9UK99 471 aa21.25■□□□□ 0.99
CCM2-209ENST00000477605 NDUFB9Q9Y6M9 179 aa21.25■□□□□ 0.99
CCM2-209ENST00000477605 PIP4K2AP48426 406 aaPredicted RBP21.24■□□□□ 0.99
CCM2-209ENST00000477605 NGLY1Q96IV0 654 aa21.24■□□□□ 0.99
CCM2-209ENST00000477605 NBPF26B4DH59 902 aa21.24■□□□□ 0.99
CCM2-209ENST00000477605 ERVV-2B6SEH9 535 aa21.24■□□□□ 0.99
CCM2-209ENST00000477605 NBPF14Q5TI25 921 aa21.24■□□□□ 0.99
CCM2-209ENST00000477605 NBPF10Q6P3W6 841 aaKnown RBP21.24■□□□□ 0.99
CCM2-209ENST00000477605 NBPF15Q8N660 670 aa21.24■□□□□ 0.99
CCM2-209ENST00000477605 DDX11Q96FC9 970 aa21.24■□□□□ 0.99
CCM2-209ENST00000477605 PTPDC1A2A3K4 754 aa21.23■□□□□ 0.99
CCM2-209ENST00000477605 HSPD1P10809 573 aaKnown RBP21.23■□□□□ 0.99
CCM2-209ENST00000477605 EVCP57679 992 aa21.23■□□□□ 0.99
CCM2-209ENST00000477605 SARM1Q6SZW1 724 aa21.23■□□□□ 0.99
CCM2-209ENST00000477605 C17orf53Q8N3J3 647 aaPredicted RBP21.23■□□□□ 0.99
CCM2-209ENST00000477605 SPEF2Q9C093 1822 aa21.23■□□□□ 0.99
CCM2-209ENST00000477605 SALL1Q9NSC2 1324 aa21.23■□□□□ 0.99
CCM2-209ENST00000477605 E7EWF7 191 aa21.22■□□□□ 0.99
CCM2-209ENST00000477605 CTDNEP1O95476 244 aa21.22■□□□□ 0.99
CCM2-209ENST00000477605 TRIM5Q9C035 493 aa21.22■□□□□ 0.99
CCM2-209ENST00000477605 CTNNA3Q9UI47 895 aa21.22■□□□□ 0.99
CCM2-209ENST00000477605 IFIT1P09914 478 aaKnown RBP21.22■□□□□ 0.99
CCM2-209ENST00000477605 VSIG10Q8N0Z9 540 aa21.22■□□□□ 0.99
CCM2-209ENST00000477605 PTGS1P23219 599 aa21.21■□□□□ 0.99
CCM2-209ENST00000477605 PCDH11XQ9BZA7 1347 aa21.21■□□□□ 0.99
CCM2-209ENST00000477605 PCDH11YQ9BZA8 1340 aa21.21■□□□□ 0.99
CCM2-209ENST00000477605 CHGBP05060 677 aa21.2■□□□□ 0.99
CCM2-209ENST00000477605 ZFYP08048 801 aaPredicted RBP21.2■□□□□ 0.99
CCM2-209ENST00000477605 TIMM10P62072 90 aa21.2■□□□□ 0.99
CCM2-209ENST00000477605 APOBRQ0VD83 1088 aa21.2■□□□□ 0.99
CCM2-209ENST00000477605 STX1AQ16623 288 aa21.2■□□□□ 0.99
CCM2-209ENST00000477605 CCDC73Q6ZRK6 1079 aa21.2■□□□□ 0.99
CCM2-209ENST00000477605 RGS22Q8NE09 1264 aa21.2■□□□□ 0.99
CCM2-209ENST00000477605 PDIA3P30101 505 aaKnown RBP21.2■□□□□ 0.98
CCM2-209ENST00000477605 CCDC186Q7Z3E2 898 aa21.2■□□□□ 0.98
CCM2-209ENST00000477605 CCAR1Q8IX12 1150 aaKnown RBP21.2■□□□□ 0.98
CCM2-209ENST00000477605 DRC7Q8IY82 874 aa21.2■□□□□ 0.98
CCM2-209ENST00000477605 FNBP4Q8N3X1 1017 aaPredicted RBP21.2■□□□□ 0.98
CCM2-209ENST00000477605 LRRC2Q9BYS8 371 aa21.2■□□□□ 0.98
CCM2-209ENST00000477605 DNAJC25Q9H1X3 360 aa21.2■□□□□ 0.98
CCM2-209ENST00000477605 MAST3O60307 1309 aa21.2■□□□□ 0.98
CCM2-209ENST00000477605 NKX1-1Q15270 411 aaPredicted RBP21.19■□□□□ 0.98
CCM2-209ENST00000477605 AKAP2Q9Y2D5 859 aa21.19■□□□□ 0.98
CCM2-209ENST00000477605 GOLGA6L19H0YKK7 550 aa21.19■□□□□ 0.98
CCM2-209ENST00000477605 NEMFO60524 1076 aa21.19■□□□□ 0.98
CCM2-209ENST00000477605 IQCB1Q15051 598 aa21.19■□□□□ 0.98
CCM2-209ENST00000477605 CHRNA2Q15822 529 aa21.19■□□□□ 0.98
CCM2-209ENST00000477605 TTLL7Q6ZT98 887 aa21.19■□□□□ 0.98
CCM2-209ENST00000477605 CABLES1Q8TDN4 633 aa21.19■□□□□ 0.98
CCM2-209ENST00000477605 CEP126Q9P2H0 1117 aa21.19■□□□□ 0.98
CCM2-209ENST00000477605 ABCC12Q96J65 1359 aa21.18■□□□□ 0.98
CCM2-209ENST00000477605 A0A1B0GUL7 405 aa21.18■□□□□ 0.98
CCM2-209ENST00000477605 RXRBP28702 533 aa21.18■□□□□ 0.98
CCM2-209ENST00000477605 FAM160A1Q05DH4 1040 aa21.18■□□□□ 0.98
CCM2-209ENST00000477605 MRFAP1L1Q96HT8 127 aa21.18■□□□□ 0.98
CCM2-209ENST00000477605 QTRT2Q9H974 415 aaKnown RBP21.18■□□□□ 0.98
CCM2-209ENST00000477605 ZSCAN25Q6NSZ9 544 aa21.17■□□□□ 0.98
CCM2-209ENST00000477605 ENGASEQ8NFI3 743 aa21.17■□□□□ 0.98
CCM2-209ENST00000477605 ZCRB1Q8TBF4 217 aaKnown RBP21.17■□□□□ 0.98
CCM2-209ENST00000477605 USP21Q9UK80 565 aa21.17■□□□□ 0.98
CCM2-209ENST00000477605 DHX16O60231 1041 aaKnown RBP21.17■□□□□ 0.98
CCM2-209ENST00000477605 KINO60870 393 aaKnown RBP21.17■□□□□ 0.98
CCM2-209ENST00000477605 CCDC158Q5M9N0 1113 aa21.17■□□□□ 0.98
CCM2-209ENST00000477605 ANO10Q9NW15 660 aa21.17■□□□□ 0.98
CCM2-209ENST00000477605 SNW1Q13573 536 aaKnown RBP21.16■□□□□ 0.98
CCM2-209ENST00000477605 LRRC24Q50LG9 513 aa21.16■□□□□ 0.98
CCM2-209ENST00000477605 USP28Q96RU2 1077 aa21.16■□□□□ 0.98
CCM2-209ENST00000477605 CCDC94Q9BW85 323 aaPredicted RBP21.16■□□□□ 0.98
CCM2-209ENST00000477605 CLIP2Q9UDT6 1046 aa21.16■□□□□ 0.98
CCM2-209ENST00000477605 A0A1W2PQ27 194 aa21.16■□□□□ 0.98
CCM2-209ENST00000477605 A0A1W2PQ64 194 aa21.16■□□□□ 0.98
CCM2-209ENST00000477605 A0A1W2PQD8 194 aa21.16■□□□□ 0.98
CCM2-209ENST00000477605 TRIM28Q13263 835 aaKnown RBP21.16■□□□□ 0.98
CCM2-209ENST00000477605 ISCA1Q9BUE6 129 aa21.16■□□□□ 0.98
CCM2-209ENST00000477605 RTEL1Q9NZ71 1219 aa21.16■□□□□ 0.98
CCM2-209ENST00000477605 NUP188Q5SRE5 1749 aa21.16■□□□□ 0.98
CCM2-209ENST00000477605 WDR19Q8NEZ3 1342 aa21.15■□□□□ 0.98
CCM2-209ENST00000477605 CCT2P78371 535 aaKnown RBP21.15■□□□□ 0.98
CCM2-209ENST00000477605 CARMIL3Q8ND23 1372 aa21.14■□□□□ 0.98
CCM2-209ENST00000477605 WDR17Q8IZU2 1322 aa21.14■□□□□ 0.98
CCM2-209ENST00000477605 CTIFO43310 598 aaKnown RBP21.14■□□□□ 0.98
CCM2-209ENST00000477605 IMMTQ16891 758 aaKnown RBP21.14■□□□□ 0.98
CCM2-209ENST00000477605 ABCA3Q99758 1704 aa21.14■□□□□ 0.97
Retrieved 100 of 20,778 RNA–protein pairs in 34.6 ms