RNA–Protein interactions for RNA: ENST00000477537.1

HLA-DMB-260, Transcript of major histocompatibility complex, class II, DM beta, humanhuman

Gene HLA-DMB, Length 1,919 nt, Biotype retained intron.

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HLA-DMB-260ENST00000477537 STK3Q13188 491 aa13.11□□□□□ -0.31
HLA-DMB-260ENST00000477537 ATP2B3Q16720 1220 aa13.11□□□□□ -0.31
HLA-DMB-260ENST00000477537 LDHAL6AQ6ZMR3 332 aa13.11□□□□□ -0.31
HLA-DMB-260ENST00000477537 Q6ZUG5 572 aa13.11□□□□□ -0.31
HLA-DMB-260ENST00000477537 SEPT12Q8IYM1 358 aa13.11□□□□□ -0.31
HLA-DMB-260ENST00000477537 TMEM87AQ8NBN3 555 aa13.11□□□□□ -0.31
HLA-DMB-260ENST00000477537 CNNM1Q9NRU3 951 aa13.11□□□□□ -0.31
HLA-DMB-260ENST00000477537 UBN2Q6ZU65 1347 aa13.1□□□□□ -0.31
HLA-DMB-260ENST00000477537 SYCE3A1L190 88 aa13.1□□□□□ -0.31
HLA-DMB-260ENST00000477537 M0R2C6 588 aa13.1□□□□□ -0.31
HLA-DMB-260ENST00000477537 PDE8AO60658 829 aa13.1□□□□□ -0.31
HLA-DMB-260ENST00000477537 LARP1BQ659C4 914 aaKnown RBP13.1□□□□□ -0.31
HLA-DMB-260ENST00000477537 STOX1Q6ZVD7 989 aa13.1□□□□□ -0.31
HLA-DMB-260ENST00000477537 ZNF34Q8IZ26 560 aa13.1□□□□□ -0.31
HLA-DMB-260ENST00000477537 HSPD1P10809 573 aaKnown RBP13.09□□□□□ -0.31
HLA-DMB-260ENST00000477537 ATP6V1AP38606 617 aa13.09□□□□□ -0.31
HLA-DMB-260ENST00000477537 SCARF1Q14162 830 aa13.09□□□□□ -0.31
HLA-DMB-260ENST00000477537 LRRFIP1Q32MZ4 808 aaKnown RBP13.09□□□□□ -0.31
HLA-DMB-260ENST00000477537 INTS5Q6P9B9 1019 aaKnown RBP13.09□□□□□ -0.31
HLA-DMB-260ENST00000477537 CCDC87Q9NVE4 849 aa13.09□□□□□ -0.31
HLA-DMB-260ENST00000477537 HSP90B1P14625 803 aaKnown RBP13.09□□□□□ -0.31
HLA-DMB-260ENST00000477537 ZAP70P43403 619 aa13.09□□□□□ -0.31
HLA-DMB-260ENST00000477537 CRKLP46109 303 aaKnown RBP13.09□□□□□ -0.31
HLA-DMB-260ENST00000477537 EIF5P55010 431 aaKnown RBP13.09□□□□□ -0.31
HLA-DMB-260ENST00000477537 RBM6P78332 1123 aaKnown RBP13.09□□□□□ -0.31
HLA-DMB-260ENST00000477537 LRSAM1Q6UWE0 723 aa13.09□□□□□ -0.31
HLA-DMB-260ENST00000477537 OSBP2Q969R2 916 aa13.09□□□□□ -0.31
HLA-DMB-260ENST00000477537 SYAP1Q96A49 352 aaPredicted RBP13.09□□□□□ -0.31
HLA-DMB-260ENST00000477537 RBSNQ9H1K0 784 aa13.09□□□□□ -0.31
HLA-DMB-260ENST00000477537 MYH7P12883 1935 aa13.09□□□□□ -0.31
HLA-DMB-260ENST00000477537 FIBPO43427 364 aa13.08□□□□□ -0.32
HLA-DMB-260ENST00000477537 ONECUT3O60422 494 aaPredicted RBP13.08□□□□□ -0.32
HLA-DMB-260ENST00000477537 ZFYP08048 801 aaPredicted RBP13.08□□□□□ -0.32
HLA-DMB-260ENST00000477537 HMGB1P09429 215 aaKnown RBP13.08□□□□□ -0.32
HLA-DMB-260ENST00000477537 PDCP20941 246 aa13.08□□□□□ -0.32
HLA-DMB-260ENST00000477537 WASHC4Q2M389 1173 aa13.08□□□□□ -0.32
HLA-DMB-260ENST00000477537 LRRC2Q9BYS8 371 aa13.08□□□□□ -0.32
HLA-DMB-260ENST00000477537 ABCC12Q96J65 1359 aa13.08□□□□□ -0.32
HLA-DMB-260ENST00000477537 LOC102724428A0A0B4J2F2 783 aa13.07□□□□□ -0.32
HLA-DMB-260ENST00000477537 A0A0G2JLW4 131 aa13.07□□□□□ -0.32
HLA-DMB-260ENST00000477537 RXRBP28702 533 aa13.07□□□□□ -0.32
HLA-DMB-260ENST00000477537 SIK1P57059 783 aa13.07□□□□□ -0.32
HLA-DMB-260ENST00000477537 FGD1P98174 961 aa13.07□□□□□ -0.32
HLA-DMB-260ENST00000477537 DNM1Q05193 864 aaKnown RBP13.07□□□□□ -0.32
HLA-DMB-260ENST00000477537 PI16Q6UXB8 463 aa13.07□□□□□ -0.32
HLA-DMB-260ENST00000477537 DHX32Q7L7V1 743 aaKnown RBP13.07□□□□□ -0.32
HLA-DMB-260ENST00000477537 GTF3C6Q969F1 213 aa13.07□□□□□ -0.32
HLA-DMB-260ENST00000477537 AKAP11Q9UKA4 1901 aa13.07□□□□□ -0.32
HLA-DMB-260ENST00000477537 FAM177BA6PVY3 158 aa13.07□□□□□ -0.32
HLA-DMB-260ENST00000477537 PDIA4P13667 645 aaKnown RBP13.07□□□□□ -0.32
HLA-DMB-260ENST00000477537 TPRNQ4KMQ1 711 aa13.07□□□□□ -0.32
HLA-DMB-260ENST00000477537 SUSD4Q5VX71 490 aa13.07□□□□□ -0.32
HLA-DMB-260ENST00000477537 CDC37L1Q7L3B6 337 aa13.07□□□□□ -0.32
HLA-DMB-260ENST00000477537 VGLL2Q8N8G2 317 aa13.07□□□□□ -0.32
HLA-DMB-260ENST00000477537 ANP32BQ92688 251 aaKnown RBP13.07□□□□□ -0.32
HLA-DMB-260ENST00000477537 BRF1Q92994 677 aa13.07□□□□□ -0.32
HLA-DMB-260ENST00000477537 E7EWF7 191 aa13.06□□□□□ -0.32
HLA-DMB-260ENST00000477537 HCLS1P14317 486 aaPredicted RBP13.06□□□□□ -0.32
HLA-DMB-260ENST00000477537 MCAMP43121 646 aa13.06□□□□□ -0.32
HLA-DMB-260ENST00000477537 UBE2HP62256 183 aa13.06□□□□□ -0.32
HLA-DMB-260ENST00000477537 CCDC173Q0VFZ6 552 aa13.06□□□□□ -0.32
HLA-DMB-260ENST00000477537 ITPK1Q13572 414 aa13.06□□□□□ -0.32
HLA-DMB-260ENST00000477537 CSPP1Q1MSJ5 1256 aa13.06□□□□□ -0.32
HLA-DMB-260ENST00000477537 TTLL5Q6EMB2 1281 aa13.06□□□□□ -0.32
HLA-DMB-260ENST00000477537 MYH14Q7Z406 1995 aaKnown RBP13.06□□□□□ -0.32
HLA-DMB-260ENST00000477537 RREB1Q92766 1687 aa13.06□□□□□ -0.32
HLA-DMB-260ENST00000477537 JAK2O60674 1132 aa13.05□□□□□ -0.32
HLA-DMB-260ENST00000477537 PDE8BO95263 885 aa13.05□□□□□ -0.32
HLA-DMB-260ENST00000477537 PTF1AQ7RTS3 328 aa13.05□□□□□ -0.32
HLA-DMB-260ENST00000477537 FERMT3Q86UX7 667 aa13.05□□□□□ -0.32
HLA-DMB-260ENST00000477537 APPBP2Q92624 585 aa13.05□□□□□ -0.32
HLA-DMB-260ENST00000477537 AK7Q96M32 723 aa13.05□□□□□ -0.32
HLA-DMB-260ENST00000477537 UTP14AQ9BVJ6 771 aaKnown RBP13.05□□□□□ -0.32
HLA-DMB-260ENST00000477537 RRAGDQ9NQL2 400 aaPredicted RBP13.05□□□□□ -0.32
HLA-DMB-260ENST00000477537 KCNQ2O43526 872 aa13.05□□□□□ -0.32
HLA-DMB-260ENST00000477537 PHF14O94880 888 aa13.05□□□□□ -0.32
HLA-DMB-260ENST00000477537 CAMTA2O94983 1202 aa13.05□□□□□ -0.32
HLA-DMB-260ENST00000477537 EXOSC10Q01780 885 aaKnown RBP13.05□□□□□ -0.32
HLA-DMB-260ENST00000477537 ZNF512BQ96KM6 892 aaPredicted RBP13.05□□□□□ -0.32
HLA-DMB-260ENST00000477537 CTNNA3Q9UI47 895 aa13.05□□□□□ -0.32
HLA-DMB-260ENST00000477537 LRP5O75197 1615 aa13.04□□□□□ -0.32
HLA-DMB-260ENST00000477537 APOBRQ0VD83 1088 aa13.04□□□□□ -0.32
HLA-DMB-260ENST00000477537 SCRN1Q12765 414 aa13.04□□□□□ -0.32
HLA-DMB-260ENST00000477537 HELBQ8NG08 1087 aaPredicted RBP13.04□□□□□ -0.32
HLA-DMB-260ENST00000477537 TRIM44Q96DX7 344 aaPredicted RBP13.04□□□□□ -0.32
HLA-DMB-260ENST00000477537 PPP1R9BQ96SB3 815 aa13.04□□□□□ -0.32
HLA-DMB-260ENST00000477537 DDX24Q9GZR7 859 aaKnown RBP eCLIP13.04□□□□□ -0.32
HLA-DMB-260ENST00000477537 PUS7LQ9H0K6 701 aaKnown RBP13.04□□□□□ -0.32
HLA-DMB-260ENST00000477537 MROH5Q6ZUA9 1318 aa13.04□□□□□ -0.32
HLA-DMB-260ENST00000477537 FOXP2O15409 715 aa13.03□□□□□ -0.32
HLA-DMB-260ENST00000477537 PFKFB2O60825 505 aa13.03□□□□□ -0.32
HLA-DMB-260ENST00000477537 PUM3Q15397 648 aaKnown RBP13.03□□□□□ -0.32
HLA-DMB-260ENST00000477537 CCDC183Q5T5S1 534 aa13.03□□□□□ -0.32
HLA-DMB-260ENST00000477537 TSPY26PQ9H489 355 aa13.03□□□□□ -0.32
HLA-DMB-260ENST00000477537 MYO5AQ9Y4I1 1855 aaKnown RBP13.03□□□□□ -0.32
HLA-DMB-260ENST00000477537 CICQ96RK0 1608 aaPredicted RBP13.03□□□□□ -0.32
HLA-DMB-260ENST00000477537 PHKA1P46020 1223 aa13.03□□□□□ -0.32
HLA-DMB-260ENST00000477537 TTF1Q15361 905 aaPredicted RBP13.03□□□□□ -0.32
HLA-DMB-260ENST00000477537 IMMTQ16891 758 aaKnown RBP13.03□□□□□ -0.32
HLA-DMB-260ENST00000477537 PARP10Q53GL7 1025 aa13.03□□□□□ -0.32
Retrieved 100 of 20,778 RNA–protein pairs in 13.1 ms