RNA–Protein interactions for RNA: ENST00000476519.1

SYNE1-223, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 4

Gene SYNE1, Length 582 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-223ENST00000476519 DCPSQ96C86 337 aaKnown RBP15.23■□□□□ 0.03
SYNE1-223ENST00000476519 TLL2Q9Y6L7 1015 aa15.23■□□□□ 0.03
SYNE1-223ENST00000476519 ZNF609O15014 1411 aa15.23■□□□□ 0.03
SYNE1-223ENST00000476519 ECE1P42892 770 aa15.22■□□□□ 0.03
SYNE1-223ENST00000476519 KIF4BQ2VIQ3 1234 aa15.22■□□□□ 0.03
SYNE1-223ENST00000476519 TAF7LQ5H9L4 462 aa15.22■□□□□ 0.03
SYNE1-223ENST00000476519 LDHAL6AQ6ZMR3 332 aa15.22■□□□□ 0.03
SYNE1-223ENST00000476519 TXNRD3Q86VQ6 643 aa15.22■□□□□ 0.03
SYNE1-223ENST00000476519 HHIPL1Q96JK4 782 aa15.22■□□□□ 0.03
SYNE1-223ENST00000476519 MYO3BQ8WXR4 1341 aa15.21■□□□□ 0.03
SYNE1-223ENST00000476519 WDR33Q9C0J8 1336 aaKnown RBP15.21■□□□□ 0.03
SYNE1-223ENST00000476519 EGFRP00533 1210 aa15.21■□□□□ 0.03
SYNE1-223ENST00000476519 NBPF7P0C2Y1 421 aaPredicted RBP15.21■□□□□ 0.03
SYNE1-223ENST00000476519 DACT2Q5SW24 774 aa15.21■□□□□ 0.03
SYNE1-223ENST00000476519 TTLL5Q6EMB2 1281 aa15.21■□□□□ 0.03
SYNE1-223ENST00000476519 KRT26Q7Z3Y9 468 aa15.21■□□□□ 0.03
SYNE1-223ENST00000476519 SAPCD2Q86UD0 394 aa15.21■□□□□ 0.03
SYNE1-223ENST00000476519 OGFOD1Q8N543 542 aa15.21■□□□□ 0.03
SYNE1-223ENST00000476519 BRPF1P55201 1214 aaPredicted RBP15.2■□□□□ 0.02
SYNE1-223ENST00000476519 MAP2K1Q02750 393 aaPredicted RBP15.2■□□□□ 0.02
SYNE1-223ENST00000476519 SULF1Q8IWU6 871 aa15.2■□□□□ 0.02
SYNE1-223ENST00000476519 KAZALD1Q96I82 304 aa15.2■□□□□ 0.02
SYNE1-223ENST00000476519 SUCLG2Q96I99 432 aa15.2■□□□□ 0.02
SYNE1-223ENST00000476519 MYOZ2Q9NPC6 264 aa15.2■□□□□ 0.02
SYNE1-223ENST00000476519 CNNM1Q9NRU3 951 aa15.2■□□□□ 0.02
SYNE1-223ENST00000476519 WBP1LQ9NX94 342 aa15.2■□□□□ 0.02
SYNE1-223ENST00000476519 TAF5LO75529 589 aa15.19■□□□□ 0.02
SYNE1-223ENST00000476519 SCARF1Q14162 830 aa15.19■□□□□ 0.02
SYNE1-223ENST00000476519 RABL6Q3YEC7 729 aaPredicted RBP15.19■□□□□ 0.02
SYNE1-223ENST00000476519 HELBQ8NG08 1087 aaPredicted RBP15.19■□□□□ 0.02
SYNE1-223ENST00000476519 AIDAQ96BJ3 306 aa15.19■□□□□ 0.02
SYNE1-223ENST00000476519 CAPNS2Q96L46 248 aa15.19■□□□□ 0.02
SYNE1-223ENST00000476519 USP44Q9H0E7 712 aa15.19■□□□□ 0.02
SYNE1-223ENST00000476519 CD209Q9NNX6 404 aa15.19■□□□□ 0.02
SYNE1-223ENST00000476519 SMC4Q9NTJ3 1288 aa15.19■□□□□ 0.02
SYNE1-223ENST00000476519 KLRK1P26718 216 aa15.18■□□□□ 0.02
SYNE1-223ENST00000476519 MAP2K2P36507 400 aa15.18■□□□□ 0.02
SYNE1-223ENST00000476519 COL13A1Q5TAT6 717 aaPredicted RBP15.18■□□□□ 0.02
SYNE1-223ENST00000476519 ZNF594Q96JF6 807 aaPredicted RBP15.18■□□□□ 0.02
SYNE1-223ENST00000476519 IL1R1P14778 569 aa15.17■□□□□ 0.02
SYNE1-223ENST00000476519 GTF2IP78347 998 aa15.17■□□□□ 0.02
SYNE1-223ENST00000476519 UBE4AQ14139 1066 aa15.17■□□□□ 0.02
SYNE1-223ENST00000476519 PAXIP1Q6ZW49 1069 aaPredicted RBP15.17■□□□□ 0.02
SYNE1-223ENST00000476519 ZNF804AQ7Z570 1209 aa15.17■□□□□ 0.02
SYNE1-223ENST00000476519 C2orf69Q8N8R5 385 aa15.17■□□□□ 0.02
SYNE1-223ENST00000476519 BICC1Q9H694 974 aaKnown RBP15.17■□□□□ 0.02
SYNE1-223ENST00000476519 ZNF408Q9H9D4 720 aa15.17■□□□□ 0.02
SYNE1-223ENST00000476519 GGA3Q9NZ52 723 aa15.17■□□□□ 0.02
SYNE1-223ENST00000476519 PITPNM2Q9BZ72 1349 aa15.17■□□□□ 0.02
SYNE1-223ENST00000476519 IRS2Q9Y4H2 1338 aa15.17■□□□□ 0.02
SYNE1-223ENST00000476519 SNAP23O00161 211 aa15.16■□□□□ 0.02
SYNE1-223ENST00000476519 CTCFP49711 727 aaPredicted RBP15.16■□□□□ 0.02
SYNE1-223ENST00000476519 ANGEL2Q5VTE6 544 aaKnown RBP15.16■□□□□ 0.02
SYNE1-223ENST00000476519 CYP4F22Q6NT55 531 aa15.16■□□□□ 0.02
SYNE1-223ENST00000476519 FBXW7Q969H0 707 aa15.16■□□□□ 0.02
SYNE1-223ENST00000476519 MXD3Q9BW11 206 aa15.16■□□□□ 0.02
SYNE1-223ENST00000476519 API5Q9BZZ5 524 aaKnown RBP15.16■□□□□ 0.02
SYNE1-223ENST00000476519 HDAC9Q9UKV0 1011 aa15.16■□□□□ 0.02
SYNE1-223ENST00000476519 RIPOR2Q9Y4F9 1068 aa15.16■□□□□ 0.02
SYNE1-223ENST00000476519 MROH5Q6ZUA9 1318 aa15.16■□□□□ 0.02
SYNE1-223ENST00000476519 ADM5C9JUS6 153 aa15.15■□□□□ 0.02
SYNE1-223ENST00000476519 PLIN1O60240 522 aa15.15■□□□□ 0.02
SYNE1-223ENST00000476519 SASH1O94885 1247 aa15.15■□□□□ 0.02
SYNE1-223ENST00000476519 FKBP1AP62942 108 aaKnown RBP15.15■□□□□ 0.02
SYNE1-223ENST00000476519 ANKRD44Q8N8A2 993 aa15.15■□□□□ 0.02
SYNE1-223ENST00000476519 GBA2Q9HCG7 927 aaPredicted RBP15.15■□□□□ 0.02
SYNE1-223ENST00000476519 PRDM10Q9NQV6 1147 aa15.15■□□□□ 0.02
SYNE1-223ENST00000476519 NOB1Q9ULX3 412 aaKnown RBP15.15■□□□□ 0.02
SYNE1-223ENST00000476519 HDAC5Q9UQL6 1122 aa15.15■□□□□ 0.02
SYNE1-223ENST00000476519 MYH3P11055 1940 aa15.14■□□□□ 0.01
SYNE1-223ENST00000476519 FOXN1O15353 648 aa15.14■□□□□ 0.01
SYNE1-223ENST00000476519 RARSP54136 660 aaKnown RBP15.14■□□□□ 0.01
SYNE1-223ENST00000476519 HUNKP57058 714 aa15.14■□□□□ 0.01
SYNE1-223ENST00000476519 DIEXFQ68CQ4 756 aaKnown RBP15.14■□□□□ 0.01
SYNE1-223ENST00000476519 DLK2Q6UY11 383 aa15.14■□□□□ 0.01
SYNE1-223ENST00000476519 ARHGAP45Q92619 1136 aa15.14■□□□□ 0.01
SYNE1-223ENST00000476519 BEGAINQ9BUH8 593 aa15.14■□□□□ 0.01
SYNE1-223ENST00000476519 SCN9AQ15858 1988 aa15.14■□□□□ 0.01
SYNE1-223ENST00000476519 ASTN2O75129 1339 aaPredicted RBP15.14■□□□□ 0.01
SYNE1-223ENST00000476519 WNT10BO00744 389 aa15.13■□□□□ 0.01
SYNE1-223ENST00000476519 HIBADHP31937 336 aaKnown RBP15.13■□□□□ 0.01
SYNE1-223ENST00000476519 FKBP1BP68106 108 aa15.13■□□□□ 0.01
SYNE1-223ENST00000476519 GRM1Q13255 1194 aa15.13■□□□□ 0.01
SYNE1-223ENST00000476519 NBPF9Q3BBW0 867 aa15.13■□□□□ 0.01
SYNE1-223ENST00000476519 KIAA0825Q8IV33 1275 aa15.13■□□□□ 0.01
SYNE1-223ENST00000476519 CCDC102AQ96A19 550 aa15.13■□□□□ 0.01
SYNE1-223ENST00000476519 PUS3Q9BZE2 481 aaKnown RBP15.13■□□□□ 0.01
SYNE1-223ENST00000476519 NOGQ13253 232 aa15.12■□□□□ 0.01
SYNE1-223ENST00000476519 TNS4Q8IZW8 715 aa15.12■□□□□ 0.01
SYNE1-223ENST00000476519 MIER1Q8N108 512 aa15.12■□□□□ 0.01
SYNE1-223ENST00000476519 MTMR14Q8NCE2 650 aa15.12■□□□□ 0.01
SYNE1-223ENST00000476519 TDRD7Q8NHU6 1098 aaKnown RBP15.12■□□□□ 0.01
SYNE1-223ENST00000476519 CDCA5Q96FF9 252 aa15.12■□□□□ 0.01
SYNE1-223ENST00000476519 ZBED3Q96IU2 234 aaPredicted RBP15.12■□□□□ 0.01
SYNE1-223ENST00000476519 FAM84BQ96KN1 310 aaPredicted RBP15.12■□□□□ 0.01
SYNE1-223ENST00000476519 AOC2O75106 756 aa15.11■□□□□ 0.01
SYNE1-223ENST00000476519 PDE8BO95263 885 aa15.11■□□□□ 0.01
SYNE1-223ENST00000476519 METTL24Q5JXM2 366 aa15.11■□□□□ 0.01
SYNE1-223ENST00000476519 RGMBQ6NW40 437 aa15.11■□□□□ 0.01
SYNE1-223ENST00000476519 FAM205AQ6ZU69 1335 aa15.11■□□□□ 0.01
Retrieved 100 of 20,778 RNA–protein pairs in 25.4 ms