RNA–Protein interactions for RNA: ENST00000475251.1

SKA3-206, Transcript of spindle and kinetochore associated complex subunit 3, humanhuman

TSL 2

Gene SKA3, Length 397 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SKA3-206ENST00000475251 CWC25Q9NXE8 425 aaPredicted RBP16.29■□□□□ 0.2
SKA3-206ENST00000475251 MYO3BQ8WXR4 1341 aa16.28■□□□□ 0.2
SKA3-206ENST00000475251 GMLQ99445 158 aa16.28■□□□□ 0.2
SKA3-206ENST00000475251 MBIPQ9NS73 344 aa16.28■□□□□ 0.2
SKA3-206ENST00000475251 HPS5Q9UPZ3 1129 aa16.28■□□□□ 0.2
SKA3-206ENST00000475251 TTLL12Q14166 644 aaPredicted RBP16.27■□□□□ 0.2
SKA3-206ENST00000475251 NOM1Q5C9Z4 860 aaKnown RBP16.27■□□□□ 0.2
SKA3-206ENST00000475251 MED23Q9ULK4 1368 aa16.26■□□□□ 0.19
SKA3-206ENST00000475251 SREBF2Q12772 1141 aa16.26■□□□□ 0.19
SKA3-206ENST00000475251 PDE4DIPQ5VU43 2346 aa16.26■□□□□ 0.19
SKA3-206ENST00000475251 GNAI1P63096 354 aa16.25■□□□□ 0.19
SKA3-206ENST00000475251 ZNF296Q8WUU4 475 aaPredicted RBP16.25■□□□□ 0.19
SKA3-206ENST00000475251 CCDC85AQ96PX6 553 aaPredicted RBP16.25■□□□□ 0.19
SKA3-206ENST00000475251 METTL22Q9BUU2 404 aaPredicted RBP16.25■□□□□ 0.19
SKA3-206ENST00000475251 PHAXQ9H814 394 aaKnown RBP16.25■□□□□ 0.19
SKA3-206ENST00000475251 IFT57Q9NWB7 429 aa16.25■□□□□ 0.19
SKA3-206ENST00000475251 UBE2Q2LH0YL09 131 aa16.24■□□□□ 0.19
SKA3-206ENST00000475251 TM4SF4P48230 202 aa16.24■□□□□ 0.19
SKA3-206ENST00000475251 SAMD1Q6SPF0 538 aaPredicted RBP16.24■□□□□ 0.19
SKA3-206ENST00000475251 TBC1D8O95759 1140 aa16.23■□□□□ 0.19
SKA3-206ENST00000475251 ZNF853P0CG23 659 aa16.23■□□□□ 0.19
SKA3-206ENST00000475251 CTSWP56202 376 aa16.23■□□□□ 0.19
SKA3-206ENST00000475251 NBPF9Q3BBW0 867 aa16.23■□□□□ 0.19
SKA3-206ENST00000475251 STRIP1Q5VSL9 837 aa16.23■□□□□ 0.19
SKA3-206ENST00000475251 CCDC30Q5VVM6 783 aa16.23■□□□□ 0.19
SKA3-206ENST00000475251 FBXO46Q6PJ61 603 aaPredicted RBP16.23■□□□□ 0.19
SKA3-206ENST00000475251 ARMC9Q7Z3E5 817 aa16.23■□□□□ 0.19
SKA3-206ENST00000475251 COA1Q9GZY4 146 aa16.23■□□□□ 0.19
SKA3-206ENST00000475251 BSDC1Q9NW68 430 aaPredicted RBP16.23■□□□□ 0.19
SKA3-206ENST00000475251 ADAMTS8Q9UP79 889 aa16.23■□□□□ 0.19
SKA3-206ENST00000475251 GPR25O00155 361 aa16.22■□□□□ 0.19
SKA3-206ENST00000475251 WNT10BO00744 389 aa16.22■□□□□ 0.19
SKA3-206ENST00000475251 ALDH1A1P00352 501 aa16.22■□□□□ 0.19
SKA3-206ENST00000475251 NEXNQ0ZGT2 675 aa16.22■□□□□ 0.19
SKA3-206ENST00000475251 DACT2Q5SW24 774 aa16.22■□□□□ 0.19
SKA3-206ENST00000475251 MOB2Q70IA6 237 aa16.22■□□□□ 0.19
SKA3-206ENST00000475251 APOBEC3FQ8IUX4 373 aaKnown RBP16.22■□□□□ 0.19
SKA3-206ENST00000475251 FBXW7Q969H0 707 aa16.22■□□□□ 0.19
SKA3-206ENST00000475251 CFHR5Q9BXR6 569 aa16.22■□□□□ 0.19
SKA3-206ENST00000475251 ELL2O00472 640 aaPredicted RBP16.21■□□□□ 0.19
SKA3-206ENST00000475251 FKTNO75072 461 aa16.21■□□□□ 0.19
SKA3-206ENST00000475251 CCT4P50991 539 aaKnown RBP16.21■□□□□ 0.19
SKA3-206ENST00000475251 MINPP1Q9UNW1 487 aa16.21■□□□□ 0.19
SKA3-206ENST00000475251 LEMD3Q9Y2U8 911 aa16.21■□□□□ 0.19
SKA3-206ENST00000475251 IGHMBP2P38935 993 aaKnown RBP16.2■□□□□ 0.18
SKA3-206ENST00000475251 PRAMEF18Q5VWM3 479 aa16.2■□□□□ 0.18
SKA3-206ENST00000475251 TTLL11Q8NHH1 800 aa16.2■□□□□ 0.18
SKA3-206ENST00000475251 JARID2Q92833 1246 aaPredicted RBP16.2■□□□□ 0.18
SKA3-206ENST00000475251 GCC1Q96CN9 775 aa16.2■□□□□ 0.18
SKA3-206ENST00000475251 SCAF8Q9UPN6 1271 aaKnown RBP16.2■□□□□ 0.18
SKA3-206ENST00000475251 MAP3K2Q9Y2U5 619 aa16.2■□□□□ 0.18
SKA3-206ENST00000475251 COL1A1P02452 1464 aaPredicted RBP16.2■□□□□ 0.18
SKA3-206ENST00000475251 MYH3P11055 1940 aa16.19■□□□□ 0.18
SKA3-206ENST00000475251 INHBEP58166 350 aa16.19■□□□□ 0.18
SKA3-206ENST00000475251 KSR2Q6VAB6 950 aa16.19■□□□□ 0.18
SKA3-206ENST00000475251 ANKRD2Q9GZV1 360 aa16.19■□□□□ 0.18
SKA3-206ENST00000475251 MKRN3Q13064 507 aaKnown RBP16.18■□□□□ 0.18
SKA3-206ENST00000475251 TTLL5Q6EMB2 1281 aa16.18■□□□□ 0.18
SKA3-206ENST00000475251 STK31Q9BXU1 1019 aa16.18■□□□□ 0.18
SKA3-206ENST00000475251 GREM2Q9H772 168 aa16.18■□□□□ 0.18
SKA3-206ENST00000475251 SPEF2Q9C093 1822 aa16.17■□□□□ 0.18
SKA3-206ENST00000475251 MANSC4A6NHS7 340 aaPredicted RBP16.17■□□□□ 0.18
SKA3-206ENST00000475251 SASH1O94885 1247 aa16.17■□□□□ 0.18
SKA3-206ENST00000475251 PTPN12Q05209 780 aaKnown RBP16.17■□□□□ 0.18
SKA3-206ENST00000475251 PI4KAP2A4QPH2 592 aa16.16■□□□□ 0.18
SKA3-206ENST00000475251 APAF1O14727 1248 aa16.16■□□□□ 0.18
SKA3-206ENST00000475251 IGKV5-2P06315 115 aa16.16■□□□□ 0.18
SKA3-206ENST00000475251 LDLRAD1Q5T700 205 aa16.16■□□□□ 0.18
SKA3-206ENST00000475251 SPRYD7Q5W111 196 aa16.16■□□□□ 0.18
SKA3-206ENST00000475251 PI4KAP1Q8N8J0 262 aa16.16■□□□□ 0.18
SKA3-206ENST00000475251 C8orf58Q8NAV2 365 aa16.16■□□□□ 0.18
SKA3-206ENST00000475251 MPHOSPH8Q99549 860 aa16.16■□□□□ 0.18
SKA3-206ENST00000475251 MXD3Q9BW11 206 aa16.16■□□□□ 0.18
SKA3-206ENST00000475251 ANGEL1Q9UNK9 670 aaKnown RBP16.16■□□□□ 0.18
SKA3-206ENST00000475251 ZNF646O15015 1829 aaPredicted RBP16.16■□□□□ 0.18
SKA3-206ENST00000475251 ZNF804BA4D1E1 1349 aa16.16■□□□□ 0.18
SKA3-206ENST00000475251 UNCXA6NJT0 531 aa16.15■□□□□ 0.18
SKA3-206ENST00000475251 KCNJ4P48050 445 aa16.15■□□□□ 0.18
SKA3-206ENST00000475251 DDX10Q13206 875 aaKnown RBP16.15■□□□□ 0.18
SKA3-206ENST00000475251 PRKG1Q13976 671 aa16.15■□□□□ 0.18
SKA3-206ENST00000475251 INTS3Q68E01 1043 aaKnown RBP16.15■□□□□ 0.18
SKA3-206ENST00000475251 KIAA0825Q8IV33 1275 aa16.15■□□□□ 0.18
SKA3-206ENST00000475251 PPP2R3BQ9Y5P8 575 aa16.15■□□□□ 0.18
SKA3-206ENST00000475251 WTIPA6NIX2 430 aaPredicted RBP16.14■□□□□ 0.17
SKA3-206ENST00000475251 MYO1BO43795 1136 aa16.14■□□□□ 0.17
SKA3-206ENST00000475251 PPP1R12BO60237 982 aaPredicted RBP16.14■□□□□ 0.17
SKA3-206ENST00000475251 ZBTB48P10074 688 aaPredicted RBP16.14■□□□□ 0.17
SKA3-206ENST00000475251 DLGAP5Q15398 846 aa16.14■□□□□ 0.17
SKA3-206ENST00000475251 SLC10A4Q96EP9 437 aa16.14■□□□□ 0.17
SKA3-206ENST00000475251 NEURL1BA8MQ27 555 aa16.13■□□□□ 0.17
SKA3-206ENST00000475251 ITGA6P23229 1130 aa16.13■□□□□ 0.17
SKA3-206ENST00000475251 GTF2IP78347 998 aa16.13■□□□□ 0.17
SKA3-206ENST00000475251 MAP3K11Q16584 847 aa16.13■□□□□ 0.17
SKA3-206ENST00000475251 OTUD7BQ6GQQ9 843 aa16.13■□□□□ 0.17
SKA3-206ENST00000475251 UBE3BQ7Z3V4 1068 aa16.13■□□□□ 0.17
SKA3-206ENST00000475251 TXNRD3Q86VQ6 643 aa16.13■□□□□ 0.17
SKA3-206ENST00000475251 ZBED3Q96IU2 234 aaPredicted RBP16.13■□□□□ 0.17
SKA3-206ENST00000475251 PLA2G12BQ9BX93 195 aa16.13■□□□□ 0.17
SKA3-206ENST00000475251 DEFB129Q9H1M3 183 aa16.13■□□□□ 0.17
SKA3-206ENST00000475251 H7C1W4 665 aa16.12■□□□□ 0.17
Retrieved 100 of 20,778 RNA–protein pairs in 18.5 ms