RNA–Protein interactions for RNA: ENST00000474025.1

SNRNP40-204, Transcript of small nuclear ribonucleoprotein U5 subunit 40, humanhuman

TSL 3

Gene SNRNP40, Length 581 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNRNP40-204ENST00000474025 RBM26Q5T8P6 1007 aaKnown RBP6.73□□□□□ -1.33
SNRNP40-204ENST00000474025 LCE2DQ5TA82 110 aaPredicted RBP6.73□□□□□ -1.33
SNRNP40-204ENST00000474025 CTU1Q7Z7A3 348 aaKnown RBP6.73□□□□□ -1.33
SNRNP40-204ENST00000474025 DCPSQ96C86 337 aaKnown RBP6.73□□□□□ -1.33
SNRNP40-204ENST00000474025 CSRNP1Q96S65 589 aa6.73□□□□□ -1.33
SNRNP40-204ENST00000474025 GGA3Q9NZ52 723 aa6.73□□□□□ -1.33
SNRNP40-204ENST00000474025 CIZ1Q9ULV3 898 aaPredicted RBP6.73□□□□□ -1.33
SNRNP40-204ENST00000474025 NSFL1CQ9UNZ2 370 aaKnown RBP6.73□□□□□ -1.33
SNRNP40-204ENST00000474025 ZNF609O15014 1411 aa6.73□□□□□ -1.33
SNRNP40-204ENST00000474025 POLR2AP24928 1970 aaKnown RBP6.73□□□□□ -1.33
SNRNP40-204ENST00000474025 LAMA3Q16787 3333 aa6.72□□□□□ -1.33
SNRNP40-204ENST00000474025 C6orf229H3BNL8 230 aa6.72□□□□□ -1.33
SNRNP40-204ENST00000474025 VIL1P09327 827 aaKnown RBP6.72□□□□□ -1.33
SNRNP40-204ENST00000474025 RIPK4P57078 832 aa6.72□□□□□ -1.33
SNRNP40-204ENST00000474025 ZNF280AP59817 542 aaPredicted RBP6.72□□□□□ -1.33
SNRNP40-204ENST00000474025 GPSM2P81274 684 aa6.72□□□□□ -1.33
SNRNP40-204ENST00000474025 PDAP1Q13442 181 aaKnown RBP6.72□□□□□ -1.33
SNRNP40-204ENST00000474025 DOK7Q18PE1 504 aa6.72□□□□□ -1.33
SNRNP40-204ENST00000474025 KRT24Q2M2I5 525 aa6.72□□□□□ -1.33
SNRNP40-204ENST00000474025 RASAL3Q86YV0 1011 aa6.72□□□□□ -1.33
SNRNP40-204ENST00000474025 SULF1Q8IWU6 871 aa6.72□□□□□ -1.33
SNRNP40-204ENST00000474025 TBC1D16Q8TBP0 767 aa6.72□□□□□ -1.33
SNRNP40-204ENST00000474025 CDCA5Q96FF9 252 aa6.72□□□□□ -1.33
SNRNP40-204ENST00000474025 FAM89AQ96GI7 184 aa6.72□□□□□ -1.33
SNRNP40-204ENST00000474025 ISCA1Q9BUE6 129 aa6.72□□□□□ -1.33
SNRNP40-204ENST00000474025 PNNQ9H307 717 aaKnown RBP6.72□□□□□ -1.33
SNRNP40-204ENST00000474025 CHPF2Q9P2E5 772 aa6.72□□□□□ -1.33
SNRNP40-204ENST00000474025 PAPPA2Q9BXP8 1791 aa6.72□□□□□ -1.33
SNRNP40-204ENST00000474025 AKAP11Q9UKA4 1901 aa6.72□□□□□ -1.33
SNRNP40-204ENST00000474025 COL6A3P12111 3177 aa6.71□□□□□ -1.33
SNRNP40-204ENST00000474025 ATP5J2-PTCD1G3V325 749 aa6.71□□□□□ -1.34
SNRNP40-204ENST00000474025 GOLGA2Q08379 1002 aa6.71□□□□□ -1.34
SNRNP40-204ENST00000474025 MKRN3Q13064 507 aaKnown RBP6.71□□□□□ -1.34
SNRNP40-204ENST00000474025 ANKRD13DQ6ZTN6 518 aa6.71□□□□□ -1.34
SNRNP40-204ENST00000474025 PDCD7Q8N8D1 485 aaKnown RBP6.71□□□□□ -1.34
SNRNP40-204ENST00000474025 PLBD2Q8NHP8 589 aa6.71□□□□□ -1.34
SNRNP40-204ENST00000474025 FAM163AQ96GL9 167 aaPredicted RBP6.71□□□□□ -1.34
SNRNP40-204ENST00000474025 EYA3Q99504 573 aa6.71□□□□□ -1.34
SNRNP40-204ENST00000474025 PODXL2Q9NZ53 605 aa6.71□□□□□ -1.34
SNRNP40-204ENST00000474025 HPS5Q9UPZ3 1129 aa6.71□□□□□ -1.34
SNRNP40-204ENST00000474025 CHL1O00533 1208 aa6.7□□□□□ -1.34
SNRNP40-204ENST00000474025 IRS4O14654 1257 aaPredicted RBP6.7□□□□□ -1.34
SNRNP40-204ENST00000474025 UFL1O94874 794 aa6.7□□□□□ -1.34
SNRNP40-204ENST00000474025 TMPOP42166 694 aaKnown RBP6.7□□□□□ -1.34
SNRNP40-204ENST00000474025 RPS8P62241 208 aaKnown RBP6.7□□□□□ -1.34
SNRNP40-204ENST00000474025 FKBP1BP68106 108 aa6.7□□□□□ -1.34
SNRNP40-204ENST00000474025 LMOD3Q0VAK6 560 aa6.7□□□□□ -1.34
SNRNP40-204ENST00000474025 TRIM28Q13263 835 aaKnown RBP6.7□□□□□ -1.34
SNRNP40-204ENST00000474025 SCARF1Q14162 830 aa6.7□□□□□ -1.34
SNRNP40-204ENST00000474025 RTL5Q5HYW3 569 aaPredicted RBP6.7□□□□□ -1.34
SNRNP40-204ENST00000474025 HDGFL1Q5TGJ6 251 aa6.7□□□□□ -1.34
SNRNP40-204ENST00000474025 ANGEL2Q5VTE6 544 aaKnown RBP6.7□□□□□ -1.34
SNRNP40-204ENST00000474025 RSBN1LQ6PCB5 846 aaPredicted RBP6.7□□□□□ -1.34
SNRNP40-204ENST00000474025 SLAIN1Q8ND83 568 aa6.7□□□□□ -1.34
SNRNP40-204ENST00000474025 GMLQ99445 158 aa6.7□□□□□ -1.34
SNRNP40-204ENST00000474025 ZC3H12CQ9C0D7 883 aaKnown RBP6.7□□□□□ -1.34
SNRNP40-204ENST00000474025 PITPNM2Q9BZ72 1349 aa6.7□□□□□ -1.34
SNRNP40-204ENST00000474025 PSME4Q14997 1843 aa6.69□□□□□ -1.34
SNRNP40-204ENST00000474025 HOXB7P09629 217 aa6.69□□□□□ -1.34
SNRNP40-204ENST00000474025 MOB2Q70IA6 237 aa6.69□□□□□ -1.34
SNRNP40-204ENST00000474025 AGBL3Q8NEM8 1001 aa6.69□□□□□ -1.34
SNRNP40-204ENST00000474025 ZNF296Q8WUU4 475 aaPredicted RBP6.69□□□□□ -1.34
SNRNP40-204ENST00000474025 SEC31BQ9NQW1 1179 aa6.69□□□□□ -1.34
SNRNP40-204ENST00000474025 DBF4Q9UBU7 674 aaPredicted RBP6.69□□□□□ -1.34
SNRNP40-204ENST00000474025 GGA1Q9UJY5 639 aa6.69□□□□□ -1.34
SNRNP40-204ENST00000474025 UBE2Q2LH0YL09 131 aa6.68□□□□□ -1.34
SNRNP40-204ENST00000474025 TBC1D8O95759 1140 aa6.68□□□□□ -1.34
SNRNP40-204ENST00000474025 USP17L8P0C7I0 530 aa6.68□□□□□ -1.34
SNRNP40-204ENST00000474025 NOM1Q5C9Z4 860 aaKnown RBP6.68□□□□□ -1.34
SNRNP40-204ENST00000474025 ZBTB38Q8NAP3 1195 aaPredicted RBP6.68□□□□□ -1.34
SNRNP40-204ENST00000474025 MYOZ2Q9NPC6 264 aa6.68□□□□□ -1.34
SNRNP40-204ENST00000474025 HYPKQ9NX55 129 aa6.68□□□□□ -1.34
SNRNP40-204ENST00000474025 ANKIB1Q9P2G1 1089 aa6.68□□□□□ -1.34
SNRNP40-204ENST00000474025 SCAF8Q9UPN6 1271 aaKnown RBP6.68□□□□□ -1.34
SNRNP40-204ENST00000474025 LAMA2P24043 3122 aaKnown RBP6.67□□□□□ -1.34
SNRNP40-204ENST00000474025 CEP290O15078 2479 aa6.67□□□□□ -1.34
SNRNP40-204ENST00000474025 USP17L3A6NCW0 530 aa6.67□□□□□ -1.34
SNRNP40-204ENST00000474025 USP17L4A6NCW7 530 aa6.67□□□□□ -1.34
SNRNP40-204ENST00000474025 G3V3G9 751 aa6.67□□□□□ -1.34
SNRNP40-204ENST00000474025 GPR25O00155 361 aa6.67□□□□□ -1.34
SNRNP40-204ENST00000474025 TM4SF4P48230 202 aa6.67□□□□□ -1.34
SNRNP40-204ENST00000474025 NEUROD2Q15784 382 aa6.67□□□□□ -1.34
SNRNP40-204ENST00000474025 NBPF9Q3BBW0 867 aa6.67□□□□□ -1.34
SNRNP40-204ENST00000474025 CCDC152Q4G0S7 254 aa6.67□□□□□ -1.34
SNRNP40-204ENST00000474025 HABP4Q5JVS0 413 aaKnown RBP6.67□□□□□ -1.34
SNRNP40-204ENST00000474025 PRAMEF18Q5VWM3 479 aa6.67□□□□□ -1.34
SNRNP40-204ENST00000474025 FBXO46Q6PJ61 603 aaPredicted RBP6.67□□□□□ -1.34
SNRNP40-204ENST00000474025 USP17L1Q7RTZ2 530 aa6.67□□□□□ -1.34
SNRNP40-204ENST00000474025 PODNQ7Z5L7 613 aa6.67□□□□□ -1.34
SNRNP40-204ENST00000474025 EIF2AK3Q9NZJ5 1116 aaKnown RBP6.67□□□□□ -1.34
SNRNP40-204ENST00000474025 HDAC9Q9UKV0 1011 aa6.67□□□□□ -1.34
SNRNP40-204ENST00000474025 XDHP47989 1333 aa6.67□□□□□ -1.34
SNRNP40-204ENST00000474025 ZNF646O15015 1829 aaPredicted RBP6.66□□□□□ -1.34
SNRNP40-204ENST00000474025 WTIPA6NIX2 430 aaPredicted RBP6.66□□□□□ -1.34
SNRNP40-204ENST00000474025 WNT10BO00744 389 aa6.66□□□□□ -1.34
SNRNP40-204ENST00000474025 PCCAP05165 728 aaPredicted RBP6.66□□□□□ -1.34
SNRNP40-204ENST00000474025 HSP90B1P14625 803 aaKnown RBP6.66□□□□□ -1.34
SNRNP40-204ENST00000474025 DACT2Q5SW24 774 aa6.66□□□□□ -1.34
SNRNP40-204ENST00000474025 DUSP27Q5VZP5 1158 aa6.66□□□□□ -1.34
SNRNP40-204ENST00000474025 CCDC146Q8IYE0 955 aa6.66□□□□□ -1.34
Retrieved 100 of 20,778 RNA–protein pairs in 45.5 ms