RNA–Protein interactions for RNA: ENST00000471307.6

CCDC39-202, Transcript of coiled-coil domain containing 39, humanhuman

TSL 3

Gene CCDC39, Length 783 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC39-202ENST00000471307 EDN3P14138 238 aa10.68□□□□□ -0.7
CCDC39-202ENST00000471307 PTPRAP18433 802 aa10.68□□□□□ -0.7
CCDC39-202ENST00000471307 CDC27P30260 824 aa10.68□□□□□ -0.7
CCDC39-202ENST00000471307 SETDB1Q15047 1291 aa10.68□□□□□ -0.7
CCDC39-202ENST00000471307 ADAM19Q9H013 955 aa10.68□□□□□ -0.7
CCDC39-202ENST00000471307 GNEQ9Y223 722 aaKnown RBP10.68□□□□□ -0.7
CCDC39-202ENST00000471307 PDE3BQ13370 1112 aa10.67□□□□□ -0.7
CCDC39-202ENST00000471307 POP1Q99575 1024 aaKnown RBP10.67□□□□□ -0.7
CCDC39-202ENST00000471307 DZANK1Q9NVP4 752 aa10.67□□□□□ -0.7
CCDC39-202ENST00000471307 NEFLP07196 543 aa10.66□□□□□ -0.7
CCDC39-202ENST00000471307 FURINP09958 794 aa10.66□□□□□ -0.7
CCDC39-202ENST00000471307 DOC2BQ14184 412 aa10.66□□□□□ -0.7
CCDC39-202ENST00000471307 LACRTQ9GZZ8 138 aa10.66□□□□□ -0.7
CCDC39-202ENST00000471307 MRPL18Q9H0U6 180 aaKnown RBP10.66□□□□□ -0.7
CCDC39-202ENST00000471307 AMOTL2Q9Y2J4 779 aa10.66□□□□□ -0.7
CCDC39-202ENST00000471307 NFKBIEO00221 500 aa10.65□□□□□ -0.7
CCDC39-202ENST00000471307 EREGO14944 169 aa10.65□□□□□ -0.7
CCDC39-202ENST00000471307 FAM117BQ6P1L5 589 aa10.65□□□□□ -0.7
CCDC39-202ENST00000471307 TMEM130Q8N3G9 435 aa10.65□□□□□ -0.7
CCDC39-202ENST00000471307 TMEM102Q8N9M5 508 aaPredicted RBP10.65□□□□□ -0.7
CCDC39-202ENST00000471307 TPSG1Q9NRR2 321 aa10.65□□□□□ -0.7
CCDC39-202ENST00000471307 FOXD3Q9UJU5 478 aaPredicted RBP10.65□□□□□ -0.7
CCDC39-202ENST00000471307 WNT8BQ93098 351 aa10.64□□□□□ -0.71
CCDC39-202ENST00000471307 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP10.64□□□□□ -0.71
CCDC39-202ENST00000471307 LINC01387J3KSC0 135 aa10.63□□□□□ -0.71
CCDC39-202ENST00000471307 PDE2AO00408 941 aaPredicted RBP10.63□□□□□ -0.71
CCDC39-202ENST00000471307 CABP4P57796 275 aa10.63□□□□□ -0.71
CCDC39-202ENST00000471307 KLHL23Q8NBE8 558 aa10.63□□□□□ -0.71
CCDC39-202ENST00000471307 ZFYVE28Q9HCC9 887 aa10.63□□□□□ -0.71
CCDC39-202ENST00000471307 NKAPLQ5M9Q1 402 aa10.62□□□□□ -0.71
CCDC39-202ENST00000471307 WFDC12Q8WWY7 111 aa10.62□□□□□ -0.71
CCDC39-202ENST00000471307 FAM129BQ96TA1 746 aa10.62□□□□□ -0.71
CCDC39-202ENST00000471307 OSMRQ99650 979 aa10.62□□□□□ -0.71
CCDC39-202ENST00000471307 SOWAHDA6NJG2 315 aa10.61□□□□□ -0.71
CCDC39-202ENST00000471307 H3BRJ5 948 aa10.61□□□□□ -0.71
CCDC39-202ENST00000471307 EPHA1P21709 976 aa10.61□□□□□ -0.71
CCDC39-202ENST00000471307 RSPO4Q2I0M5 234 aaPredicted RBP10.61□□□□□ -0.71
CCDC39-202ENST00000471307 ADAMTSL4Q6UY14 1074 aa10.61□□□□□ -0.71
CCDC39-202ENST00000471307 ZKSCAN3Q9BRR0 538 aa10.61□□□□□ -0.71
CCDC39-202ENST00000471307 SSBP4Q9BWG4 385 aaPredicted RBP10.61□□□□□ -0.71
CCDC39-202ENST00000471307 FSCN2O14926 492 aa10.6□□□□□ -0.71
CCDC39-202ENST00000471307 ACPPP15309 386 aa10.6□□□□□ -0.71
CCDC39-202ENST00000471307 CD68P34810 354 aaPredicted RBP10.6□□□□□ -0.71
CCDC39-202ENST00000471307 NXPE3Q969Y0 559 aa10.6□□□□□ -0.71
CCDC39-202ENST00000471307 H2AFB1P0C5Y9 115 aa10.59□□□□□ -0.71
CCDC39-202ENST00000471307 H2AFB2P0C5Z0 115 aa10.59□□□□□ -0.71
CCDC39-202ENST00000471307 NOS3P29474 1203 aa10.59□□□□□ -0.71
CCDC39-202ENST00000471307 PIP4K2BP78356 416 aa10.59□□□□□ -0.71
CCDC39-202ENST00000471307 GALNT11Q8NCW6 608 aa10.59□□□□□ -0.71
CCDC39-202ENST00000471307 BSNDQ8WZ55 320 aa10.59□□□□□ -0.71
CCDC39-202ENST00000471307 RBCK1Q9BYM8 510 aa10.59□□□□□ -0.71
CCDC39-202ENST00000471307 BHLHE41Q9C0J9 482 aaPredicted RBP10.59□□□□□ -0.71
CCDC39-202ENST00000471307 AKTIPQ9H8T0 292 aa10.59□□□□□ -0.71
CCDC39-202ENST00000471307 OSGEPQ9NPF4 335 aa10.59□□□□□ -0.71
CCDC39-202ENST00000471307 SEC31BQ9NQW1 1179 aa10.59□□□□□ -0.71
CCDC39-202ENST00000471307 SH2B1Q9NRF2 756 aaPredicted RBP10.59□□□□□ -0.71
CCDC39-202ENST00000471307 SOX13Q9UN79 622 aa10.59□□□□□ -0.71
CCDC39-202ENST00000471307 TM4SF5O14894 197 aa10.58□□□□□ -0.72
CCDC39-202ENST00000471307 IREB2P48200 963 aaKnown RBP10.58□□□□□ -0.72
CCDC39-202ENST00000471307 PEAR1Q5VY43 1037 aaPredicted RBP10.58□□□□□ -0.72
CCDC39-202ENST00000471307 TXNDC11Q6PKC3 985 aa10.58□□□□□ -0.72
CCDC39-202ENST00000471307 GALNT12Q8IXK2 581 aa10.58□□□□□ -0.72
CCDC39-202ENST00000471307 DMRTB1Q96MA1 342 aa10.58□□□□□ -0.72
CCDC39-202ENST00000471307 F8W735 103 aaPredicted RBP10.57□□□□□ -0.72
CCDC39-202ENST00000471307 HHIPQ96QV1 700 aa10.57□□□□□ -0.72
CCDC39-202ENST00000471307 Q6ZS46 218 aa10.56□□□□□ -0.72
CCDC39-202ENST00000471307 ZC3HAV1Q7Z2W4 902 aaKnown RBP10.56□□□□□ -0.72
CCDC39-202ENST00000471307 TP53INP1Q96A56 240 aa10.56□□□□□ -0.72
CCDC39-202ENST00000471307 ALKBH8Q96BT7 664 aaKnown RBP10.56□□□□□ -0.72
CCDC39-202ENST00000471307 DNAJC25Q9H1X3 360 aa10.56□□□□□ -0.72
CCDC39-202ENST00000471307 SEMA6BQ9H3T3 888 aa10.56□□□□□ -0.72
CCDC39-202ENST00000471307 DYRK3O43781 588 aa10.55□□□□□ -0.72
CCDC39-202ENST00000471307 EIF4EBP3O60516 100 aaPredicted RBP10.55□□□□□ -0.72
CCDC39-202ENST00000471307 TRPA1O75762 1119 aa10.55□□□□□ -0.72
CCDC39-202ENST00000471307 KCNA1Q09470 495 aa10.55□□□□□ -0.72
CCDC39-202ENST00000471307 FOXD4L6Q3SYB3 417 aaPredicted RBP10.55□□□□□ -0.72
CCDC39-202ENST00000471307 FOXD4L3Q6VB84 417 aaPredicted RBP10.55□□□□□ -0.72
CCDC39-202ENST00000471307 DZIP1LQ8IYY4 767 aaKnown RBP10.55□□□□□ -0.72
CCDC39-202ENST00000471307 CPNE3O75131 537 aaKnown RBP10.54□□□□□ -0.72
CCDC39-202ENST00000471307 IGHA2P01877 340 aa10.54□□□□□ -0.72
CCDC39-202ENST00000471307 CDC25BP30305 580 aa10.54□□□□□ -0.72
CCDC39-202ENST00000471307 ARL4DP49703 201 aa10.54□□□□□ -0.72
CCDC39-202ENST00000471307 CARD10Q9BWT7 1032 aa10.54□□□□□ -0.72
CCDC39-202ENST00000471307 PATL2C9JE40 543 aaKnown RBP10.53□□□□□ -0.72
CCDC39-202ENST00000471307 TMC1Q8TDI8 760 aa10.53□□□□□ -0.72
CCDC39-202ENST00000471307 MEGF10Q96KG7 1140 aa10.53□□□□□ -0.72
CCDC39-202ENST00000471307 TRAIPQ9BWF2 469 aa10.53□□□□□ -0.72
CCDC39-202ENST00000471307 LATS2Q9NRM7 1088 aa10.53□□□□□ -0.72
CCDC39-202ENST00000471307 DCTN4Q9UJW0 460 aa10.53□□□□□ -0.72
CCDC39-202ENST00000471307 VN1R5Q7Z5H4 357 aa10.52□□□□□ -0.73
CCDC39-202ENST00000471307 SOX17Q9H6I2 414 aaPredicted RBP10.52□□□□□ -0.73
CCDC39-202ENST00000471307 BIN2Q9UBW5 565 aaPredicted RBP10.52□□□□□ -0.73
CCDC39-202ENST00000471307 GPR182O15218 404 aa10.51□□□□□ -0.73
CCDC39-202ENST00000471307 POLR3DP05423 398 aaPredicted RBP10.51□□□□□ -0.73
CCDC39-202ENST00000471307 C19orf57Q0VDD7 668 aa10.51□□□□□ -0.73
CCDC39-202ENST00000471307 ORC1Q13415 861 aa10.51□□□□□ -0.73
CCDC39-202ENST00000471307 IKBKEQ14164 716 aa10.51□□□□□ -0.73
CCDC39-202ENST00000471307 DUOXA2Q1HG44 320 aa10.51□□□□□ -0.73
CCDC39-202ENST00000471307 KIAA0319Q5VV43 1072 aa10.51□□□□□ -0.73
CCDC39-202ENST00000471307 ACAD11Q709F0 780 aa10.51□□□□□ -0.73
Retrieved 100 of 20,778 RNA–protein pairs in 21.6 ms