RNA–Protein interactions for RNA: ENST00000469852.5

COL9A3-209, Transcript of collagen type IX alpha 3 chain, humanhuman

TSL 3

Gene COL9A3, Length 901 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A3-209ENST00000469852 KIAA2012Q0VF49 1180 aa18.27■□□□□ 0.52
COL9A3-209ENST00000469852 UBE4AQ14139 1066 aa18.27■□□□□ 0.52
COL9A3-209ENST00000469852 ATP2B3Q16720 1220 aa18.27■□□□□ 0.52
COL9A3-209ENST00000469852 WASHC4Q2M389 1173 aa18.27■□□□□ 0.52
COL9A3-209ENST00000469852 SUPT20HQ8NEM7 779 aa18.27■□□□□ 0.52
COL9A3-209ENST00000469852 RWDD1Q9H446 243 aaPredicted RBP18.27■□□□□ 0.52
COL9A3-209ENST00000469852 A0A1B0GUL7 405 aa18.26■□□□□ 0.51
COL9A3-209ENST00000469852 RAB11FIP3O75154 756 aa18.26■□□□□ 0.51
COL9A3-209ENST00000469852 HSP90AB4PQ58FF6 505 aa18.26■□□□□ 0.51
COL9A3-209ENST00000469852 ERC1Q8IUD2 1116 aa18.26■□□□□ 0.51
COL9A3-209ENST00000469852 TLR7Q9NYK1 1049 aaKnown RBP18.26■□□□□ 0.51
COL9A3-209ENST00000469852 SCN9AQ15858 1988 aa18.25■□□□□ 0.51
COL9A3-209ENST00000469852 LMNB1P20700 586 aa18.25■□□□□ 0.51
COL9A3-209ENST00000469852 GYG1P46976 350 aa18.25■□□□□ 0.51
COL9A3-209ENST00000469852 DOK7Q18PE1 504 aa18.25■□□□□ 0.51
COL9A3-209ENST00000469852 TNNI3KQ59H18 835 aa18.25■□□□□ 0.51
COL9A3-209ENST00000469852 C15orf52Q6ZUT6 534 aaKnown RBP18.25■□□□□ 0.51
COL9A3-209ENST00000469852 SMC5Q8IY18 1101 aa18.25■□□□□ 0.51
COL9A3-209ENST00000469852 ZNF526Q8TF50 670 aaPredicted RBP18.25■□□□□ 0.51
COL9A3-209ENST00000469852 LPIN2Q92539 896 aa18.25■□□□□ 0.51
COL9A3-209ENST00000469852 EAF2Q96CJ1 260 aaPredicted RBP18.25■□□□□ 0.51
COL9A3-209ENST00000469852 KIF1BPQ96EK5 621 aa18.25■□□□□ 0.51
COL9A3-209ENST00000469852 EYA3Q99504 573 aa18.25■□□□□ 0.51
COL9A3-209ENST00000469852 BCL11AQ9H165 835 aa18.25■□□□□ 0.51
COL9A3-209ENST00000469852 FPGT-TNNI3KV9GXZ4 949 aa18.25■□□□□ 0.51
COL9A3-209ENST00000469852 SLC5A1P13866 664 aa18.24■□□□□ 0.51
COL9A3-209ENST00000469852 C9orf131Q5VYM1 1079 aa18.24■□□□□ 0.51
COL9A3-209ENST00000469852 LARGE2Q8N3Y3 721 aa18.24■□□□□ 0.51
COL9A3-209ENST00000469852 FAM84BQ96KN1 310 aaPredicted RBP18.24■□□□□ 0.51
COL9A3-209ENST00000469852 LRRCC1Q9C099 1032 aa18.24■□□□□ 0.51
COL9A3-209ENST00000469852 ZC3H12CQ9C0D7 883 aaKnown RBP18.24■□□□□ 0.51
COL9A3-209ENST00000469852 DBNDD1Q9H9R9 158 aa18.24■□□□□ 0.51
COL9A3-209ENST00000469852 GPR108Q9NPR9 543 aa18.24■□□□□ 0.51
COL9A3-209ENST00000469852 RNF181Q9P0P0 153 aa18.24■□□□□ 0.51
COL9A3-209ENST00000469852 ZNF646O15015 1829 aaPredicted RBP18.23■□□□□ 0.51
COL9A3-209ENST00000469852 GCC1Q96CN9 775 aa18.23■□□□□ 0.51
COL9A3-209ENST00000469852 NEUROD6Q96NK8 337 aa18.23■□□□□ 0.51
COL9A3-209ENST00000469852 CCDC8Q9H0W5 538 aaPredicted RBP18.23■□□□□ 0.51
COL9A3-209ENST00000469852 AKAP2Q9Y2D5 859 aa18.23■□□□□ 0.51
COL9A3-209ENST00000469852 YDJCA8MPS7 323 aa18.22■□□□□ 0.51
COL9A3-209ENST00000469852 IFIT1P09914 478 aaKnown RBP18.22■□□□□ 0.51
COL9A3-209ENST00000469852 BCAMP50895 628 aa18.22■□□□□ 0.51
COL9A3-209ENST00000469852 B4GALNT3Q6L9W6 998 aa18.22■□□□□ 0.51
COL9A3-209ENST00000469852 AACSQ86V21 672 aa18.22■□□□□ 0.51
COL9A3-209ENST00000469852 XAGE2Q96GT9 111 aa18.22■□□□□ 0.51
COL9A3-209ENST00000469852 DBNDD2Q9BQY9 259 aa18.22■□□□□ 0.51
COL9A3-209ENST00000469852 VPS33BQ9H267 617 aa18.22■□□□□ 0.51
COL9A3-209ENST00000469852 KCNQ5Q9NR82 932 aa18.22■□□□□ 0.51
COL9A3-209ENST00000469852 DBNLQ9UJU6 430 aaKnown RBP18.22■□□□□ 0.51
COL9A3-209ENST00000469852 KDM2BQ8NHM5 1336 aa18.22■□□□□ 0.51
COL9A3-209ENST00000469852 KIF3CO14782 793 aa18.21■□□□□ 0.51
COL9A3-209ENST00000469852 ECE2O60344 883 aa18.21■□□□□ 0.51
COL9A3-209ENST00000469852 FBXO33Q7Z6M2 555 aa18.21■□□□□ 0.51
COL9A3-209ENST00000469852 PHKA1P46020 1223 aa18.2■□□□□ 0.5
COL9A3-209ENST00000469852 ANKRD45Q5TZF3 282 aa18.2■□□□□ 0.5
COL9A3-209ENST00000469852 ERICH6BQ5W0A0 696 aa18.2■□□□□ 0.5
COL9A3-209ENST00000469852 NIM1KQ8IY84 436 aa18.2■□□□□ 0.5
COL9A3-209ENST00000469852 C16orf71Q8IYS4 520 aaPredicted RBP18.2■□□□□ 0.5
COL9A3-209ENST00000469852 IQSEC3Q9UPP2 1182 aaPredicted RBP18.2■□□□□ 0.5
COL9A3-209ENST00000469852 PSME4Q14997 1843 aa18.2■□□□□ 0.5
COL9A3-209ENST00000469852 COL1A1P02452 1464 aaPredicted RBP18.2■□□□□ 0.5
COL9A3-209ENST00000469852 MYH13Q9UKX3 1938 aa18.19■□□□□ 0.5
COL9A3-209ENST00000469852 HSPA6P17066 643 aa18.19■□□□□ 0.5
COL9A3-209ENST00000469852 HIBADHP31937 336 aaKnown RBP18.19■□□□□ 0.5
COL9A3-209ENST00000469852 CCDC102BQ68D86 513 aa18.19■□□□□ 0.5
COL9A3-209ENST00000469852 ZNF804AQ7Z570 1209 aa18.19■□□□□ 0.5
COL9A3-209ENST00000469852 CLASRPQ8N2M8 674 aaKnown RBP18.19■□□□□ 0.5
COL9A3-209ENST00000469852 OTUD7AQ8TE49 926 aaPredicted RBP18.19■□□□□ 0.5
COL9A3-209ENST00000469852 COA1Q9GZY4 146 aa18.19■□□□□ 0.5
COL9A3-209ENST00000469852 CD209Q9NNX6 404 aa18.19■□□□□ 0.5
COL9A3-209ENST00000469852 ZNF541Q9H0D2 1346 aa18.19■□□□□ 0.5
COL9A3-209ENST00000469852 FZD9O00144 591 aa18.18■□□□□ 0.5
COL9A3-209ENST00000469852 JDP2Q8WYK2 163 aa18.18■□□□□ 0.5
COL9A3-209ENST00000469852 CCDC136Q96JN2 1154 aa18.18■□□□□ 0.5
COL9A3-209ENST00000469852 PPP4R2Q9NY27 417 aa18.18■□□□□ 0.5
COL9A3-209ENST00000469852 ZNRF3Q9ULT6 936 aa18.18■□□□□ 0.5
COL9A3-209ENST00000469852 IL1R1P14778 569 aa18.17■□□□□ 0.5
COL9A3-209ENST00000469852 NUCB1Q02818 461 aa18.17■□□□□ 0.5
COL9A3-209ENST00000469852 CAVIN4Q5BKX8 364 aa18.17■□□□□ 0.5
COL9A3-209ENST00000469852 TDRD7Q8NHU6 1098 aaKnown RBP18.17■□□□□ 0.5
COL9A3-209ENST00000469852 LNPKQ9C0E8 428 aa18.17■□□□□ 0.5
COL9A3-209ENST00000469852 JAG2Q9Y219 1238 aa18.17■□□□□ 0.5
COL9A3-209ENST00000469852 AKAP11Q9UKA4 1901 aa18.16■□□□□ 0.5
COL9A3-209ENST00000469852 G3V3G9 751 aa18.16■□□□□ 0.5
COL9A3-209ENST00000469852 RAD17O75943 681 aa18.16■□□□□ 0.5
COL9A3-209ENST00000469852 SCARF1Q14162 830 aa18.16■□□□□ 0.5
COL9A3-209ENST00000469852 DCAF8Q5TAQ9 597 aa18.16■□□□□ 0.5
COL9A3-209ENST00000469852 VPS37DQ86XT2 251 aa18.16■□□□□ 0.5
COL9A3-209ENST00000469852 IFIT2P09913 472 aaKnown RBP18.15■□□□□ 0.5
COL9A3-209ENST00000469852 CXCL9Q07325 125 aa18.15■□□□□ 0.5
COL9A3-209ENST00000469852 GORABQ5T7V8 394 aa18.15■□□□□ 0.5
COL9A3-209ENST00000469852 PI16Q6UXB8 463 aa18.15■□□□□ 0.5
COL9A3-209ENST00000469852 PODNQ7Z5L7 613 aa18.15■□□□□ 0.5
COL9A3-209ENST00000469852 CHD1LQ86WJ1 897 aa18.15■□□□□ 0.5
COL9A3-209ENST00000469852 MXD3Q9BW11 206 aa18.15■□□□□ 0.5
COL9A3-209ENST00000469852 SALL3Q9BXA9 1300 aa18.15■□□□□ 0.5
COL9A3-209ENST00000469852 PSMD14O00487 310 aa18.14■□□□□ 0.49
COL9A3-209ENST00000469852 ARID4AP29374 1257 aaPredicted RBP18.14■□□□□ 0.49
COL9A3-209ENST00000469852 RASGRF1Q13972 1273 aa18.14■□□□□ 0.49
COL9A3-209ENST00000469852 TSHZ3Q63HK5 1081 aa18.14■□□□□ 0.49
Retrieved 100 of 20,778 RNA–protein pairs in 65.8 ms