RNA–Protein interactions for RNA: ENST00000469585.5

PTCD3-208, Transcript of pentatricopeptide repeat domain 3, humanhuman

TSL 2

Gene PTCD3, Length 885 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCD3-208ENST00000469585 FMR1Q06787 632 aaKnown RBP eCLIP9.3□□□□□ -0.92
PTCD3-208ENST00000469585 ZNF438Q7Z4V0 828 aa9.3□□□□□ -0.92
PTCD3-208ENST00000469585 TTC16Q8NEE8 873 aa9.3□□□□□ -0.92
PTCD3-208ENST00000469585 SLC16A10Q8TF71 515 aa9.3□□□□□ -0.92
PTCD3-208ENST00000469585 ELP3Q9H9T3 547 aa9.3□□□□□ -0.92
PTCD3-208ENST00000469585 EFCC1Q9HA90 598 aa9.3□□□□□ -0.92
PTCD3-208ENST00000469585 TMEM63CQ9P1W3 806 aa9.3□□□□□ -0.92
PTCD3-208ENST00000469585 KDM5CP41229 1560 aa9.29□□□□□ -0.92
PTCD3-208ENST00000469585 FRMPD1Q5SYB0 1578 aa9.29□□□□□ -0.92
PTCD3-208ENST00000469585 MX2P20592 715 aa9.29□□□□□ -0.92
PTCD3-208ENST00000469585 MLECQ14165 292 aa9.29□□□□□ -0.92
PTCD3-208ENST00000469585 NIF3L1Q9GZT8 377 aa9.29□□□□□ -0.92
PTCD3-208ENST00000469585 ZFATQ9P243 1243 aa9.29□□□□□ -0.92
PTCD3-208ENST00000469585 TRAPPC8Q9Y2L5 1435 aa9.29□□□□□ -0.92
PTCD3-208ENST00000469585 ATP7AQ04656 1500 aa9.28□□□□□ -0.92
PTCD3-208ENST00000469585 TNFRSF21O75509 655 aa9.28□□□□□ -0.92
PTCD3-208ENST00000469585 COL19A1Q14993 1142 aa9.28□□□□□ -0.92
PTCD3-208ENST00000469585 RNFT1Q5M7Z0 435 aa9.28□□□□□ -0.92
PTCD3-208ENST00000469585 LCE2CQ5TA81 110 aa9.28□□□□□ -0.92
PTCD3-208ENST00000469585 KRT25Q7Z3Z0 450 aa9.28□□□□□ -0.92
PTCD3-208ENST00000469585 RAB44Q7Z6P3 723 aaPredicted RBP9.28□□□□□ -0.92
PTCD3-208ENST00000469585 IRF7Q92985 503 aa9.28□□□□□ -0.92
PTCD3-208ENST00000469585 COL25A1Q9BXS0 654 aaPredicted RBP9.28□□□□□ -0.92
PTCD3-208ENST00000469585 MBIPQ9NS73 344 aa9.28□□□□□ -0.92
PTCD3-208ENST00000469585 GTF3C5Q9Y5Q8 519 aaPredicted RBP9.28□□□□□ -0.92
PTCD3-208ENST00000469585 RTEL1-TNFRSF6BF6WH68 1400 aa9.28□□□□□ -0.92
PTCD3-208ENST00000469585 FGD6Q6ZV73 1430 aa9.28□□□□□ -0.92
PTCD3-208ENST00000469585 BMP4P12644 408 aa9.27□□□□□ -0.93
PTCD3-208ENST00000469585 KRT76Q01546 638 aa9.27□□□□□ -0.93
PTCD3-208ENST00000469585 PLCB3Q01970 1234 aa9.27□□□□□ -0.93
PTCD3-208ENST00000469585 ABI2Q9NYB9 513 aaPredicted RBP9.27□□□□□ -0.93
PTCD3-208ENST00000469585 FOXD3Q9UJU5 478 aaPredicted RBP9.27□□□□□ -0.93
PTCD3-208ENST00000469585 YEATS2Q9ULM3 1422 aa9.27□□□□□ -0.93
PTCD3-208ENST00000469585 ZNF644Q9H582 1327 aaPredicted RBP9.27□□□□□ -0.93
PTCD3-208ENST00000469585 PTPN23Q9H3S7 1636 aa9.27□□□□□ -0.93
PTCD3-208ENST00000469585 ARHGEF5Q12774 1597 aa9.26□□□□□ -0.93
PTCD3-208ENST00000469585 MMP20O60882 483 aa9.26□□□□□ -0.93
PTCD3-208ENST00000469585 MAP3K6O95382 1288 aa9.26□□□□□ -0.93
PTCD3-208ENST00000469585 P4HBP07237 508 aaKnown RBP9.26□□□□□ -0.93
PTCD3-208ENST00000469585 RARAP10276 462 aa9.26□□□□□ -0.93
PTCD3-208ENST00000469585 NFKB1P19838 968 aa9.26□□□□□ -0.93
PTCD3-208ENST00000469585 ORC1Q13415 861 aa9.26□□□□□ -0.93
PTCD3-208ENST00000469585 ZNF468Q5VIY5 522 aaPredicted RBP9.26□□□□□ -0.93
PTCD3-208ENST00000469585 BHMTQ93088 406 aa9.26□□□□□ -0.93
PTCD3-208ENST00000469585 PNMA5Q96PV4 448 aa9.26□□□□□ -0.93
PTCD3-208ENST00000469585 CHRDQ9H2X0 955 aa9.26□□□□□ -0.93
PTCD3-208ENST00000469585 CNTN3Q9P232 1028 aa9.26□□□□□ -0.93
PTCD3-208ENST00000469585 ANKRD30AQ9BXX3 1397 aa9.25□□□□□ -0.93
PTCD3-208ENST00000469585 FBXO33Q7Z6M2 555 aa9.25□□□□□ -0.93
PTCD3-208ENST00000469585 SNX29Q8TEQ0 813 aa9.25□□□□□ -0.93
PTCD3-208ENST00000469585 FOXD4L4Q8WXT5 416 aaPredicted RBP9.25□□□□□ -0.93
PTCD3-208ENST00000469585 ZNF775Q96BV0 537 aaPredicted RBP9.25□□□□□ -0.93
PTCD3-208ENST00000469585 PRR12Q9ULL5 1215 aa9.25□□□□□ -0.93
PTCD3-208ENST00000469585 A2MP01023 1474 aa9.25□□□□□ -0.93
PTCD3-208ENST00000469585 ADGBQ8N7X0 1667 aa9.25□□□□□ -0.93
PTCD3-208ENST00000469585 NEFLP07196 543 aa9.24□□□□□ -0.93
PTCD3-208ENST00000469585 NEUROD1Q13562 356 aa9.24□□□□□ -0.93
PTCD3-208ENST00000469585 GGT6Q6P531 493 aa9.24□□□□□ -0.93
PTCD3-208ENST00000469585 SYT9Q86SS6 491 aa9.24□□□□□ -0.93
PTCD3-208ENST00000469585 C1orf127Q8N9H9 656 aa9.24□□□□□ -0.93
PTCD3-208ENST00000469585 AVENQ9NQS1 362 aaPredicted RBP9.24□□□□□ -0.93
PTCD3-208ENST00000469585 KLF15Q9UIH9 416 aa9.24□□□□□ -0.93
PTCD3-208ENST00000469585 ARHGEF12Q9NZN5 1544 aa9.24□□□□□ -0.93
PTCD3-208ENST00000469585 REREQ9P2R6 1566 aa9.24□□□□□ -0.93
PTCD3-208ENST00000469585 DIP2CQ9Y2E4 1556 aa9.24□□□□□ -0.93
PTCD3-208ENST00000469585 CNTLNQ9NXG0 1405 aa9.23□□□□□ -0.93
PTCD3-208ENST00000469585 EIF1AYO14602 144 aaKnown RBP9.23□□□□□ -0.93
PTCD3-208ENST00000469585 ARAFP10398 606 aa9.23□□□□□ -0.93
PTCD3-208ENST00000469585 MAP2K3P46734 347 aa9.23□□□□□ -0.93
PTCD3-208ENST00000469585 ENOX2Q16206 610 aaKnown RBP9.23□□□□□ -0.93
PTCD3-208ENST00000469585 TTC39BQ5VTQ0 682 aaPredicted RBP9.23□□□□□ -0.93
PTCD3-208ENST00000469585 OR13H1Q8NG92 308 aa9.23□□□□□ -0.93
PTCD3-208ENST00000469585 CSRNP1Q96S65 589 aa9.23□□□□□ -0.93
PTCD3-208ENST00000469585 DNAJC25Q9H1X3 360 aa9.23□□□□□ -0.93
PTCD3-208ENST00000469585 ZFYVE28Q9HCC9 887 aa9.23□□□□□ -0.93
PTCD3-208ENST00000469585 TLR7Q9NYK1 1049 aaKnown RBP9.23□□□□□ -0.93
PTCD3-208ENST00000469585 AMOTL2Q9Y2J4 779 aa9.23□□□□□ -0.93
PTCD3-208ENST00000469585 INO80Q9ULG1 1556 aaPredicted RBP9.23□□□□□ -0.93
PTCD3-208ENST00000469585 KANK1Q14678 1352 aa9.23□□□□□ -0.93
PTCD3-208ENST00000469585 BCORL1Q5H9F3 1711 aa9.22□□□□□ -0.93
PTCD3-208ENST00000469585 MBD5Q9P267 1494 aa9.22□□□□□ -0.93
PTCD3-208ENST00000469585 SHANK2Q9UPX8 1470 aa9.22□□□□□ -0.93
PTCD3-208ENST00000469585 KIDINS220Q9ULH0 1771 aa9.22□□□□□ -0.93
PTCD3-208ENST00000469585 KIF3BO15066 747 aa9.22□□□□□ -0.93
PTCD3-208ENST00000469585 PHACTR2O75167 634 aa9.22□□□□□ -0.93
PTCD3-208ENST00000469585 SIN3BO75182 1162 aa9.22□□□□□ -0.93
PTCD3-208ENST00000469585 CYP2E1P05181 493 aaPredicted RBP9.22□□□□□ -0.93
PTCD3-208ENST00000469585 HOXD8P13378 290 aaPredicted RBP9.22□□□□□ -0.93
PTCD3-208ENST00000469585 SOX18P35713 384 aa9.22□□□□□ -0.93
PTCD3-208ENST00000469585 ITGAEP38570 1179 aa9.22□□□□□ -0.93
PTCD3-208ENST00000469585 PCBP4P57723 403 aaKnown RBP9.22□□□□□ -0.93
PTCD3-208ENST00000469585 SRSF11Q05519 484 aaKnown RBP9.22□□□□□ -0.93
PTCD3-208ENST00000469585 NSFL1CQ9UNZ2 370 aaKnown RBP9.22□□□□□ -0.93
PTCD3-208ENST00000469585 ABCA6Q8N139 1617 aa9.22□□□□□ -0.93
PTCD3-208ENST00000469585 DHX29Q7Z478 1369 aaKnown RBP9.22□□□□□ -0.93
PTCD3-208ENST00000469585 DAPK1P53355 1430 aa9.22□□□□□ -0.93
PTCD3-208ENST00000469585 AGLP35573 1532 aa9.21□□□□□ -0.93
PTCD3-208ENST00000469585 CPNE3O75131 537 aaKnown RBP9.21□□□□□ -0.94
PTCD3-208ENST00000469585 WFS1O76024 890 aa9.21□□□□□ -0.94
PTCD3-208ENST00000469585 MAPK8P45983 427 aa9.21□□□□□ -0.94
Retrieved 100 of 20,778 RNA–protein pairs in 32 ms