RNA–Protein interactions for RNA: ENST00000466342.1

SQSTM1-206, Transcript of sequestosome 1, humanhuman

TSL 2

Gene SQSTM1, Length 808 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SQSTM1-206ENST00000466342 CHMP4AQ9BY43 222 aa15.27■□□□□ 0.04
SQSTM1-206ENST00000466342 HYPKQ9NX55 129 aa15.27■□□□□ 0.04
SQSTM1-206ENST00000466342 PTPN22Q9Y2R2 807 aa15.27■□□□□ 0.04
SQSTM1-206ENST00000466342 ZNF609O15014 1411 aa15.26■□□□□ 0.03
SQSTM1-206ENST00000466342 SH3TC1Q8TE82 1336 aa15.26■□□□□ 0.03
SQSTM1-206ENST00000466342 E9PSI1 815 aa15.26■□□□□ 0.03
SQSTM1-206ENST00000466342 G3V3G9 751 aa15.26■□□□□ 0.03
SQSTM1-206ENST00000466342 INHBEP58166 350 aa15.26■□□□□ 0.03
SQSTM1-206ENST00000466342 DCAF8Q5TAQ9 597 aa15.26■□□□□ 0.03
SQSTM1-206ENST00000466342 PRAMEF18Q5VWM3 479 aa15.26■□□□□ 0.03
SQSTM1-206ENST00000466342 RSBN1LQ6PCB5 846 aaPredicted RBP15.26■□□□□ 0.03
SQSTM1-206ENST00000466342 ANKRD13DQ6ZTN6 518 aa15.26■□□□□ 0.03
SQSTM1-206ENST00000466342 PLBD2Q8NHP8 589 aa15.26■□□□□ 0.03
SQSTM1-206ENST00000466342 TBC1D16Q8TBP0 767 aa15.26■□□□□ 0.03
SQSTM1-206ENST00000466342 CELF1Q92879 486 aaKnown RBP15.26■□□□□ 0.03
SQSTM1-206ENST00000466342 ARMC5Q96C12 935 aa15.26■□□□□ 0.03
SQSTM1-206ENST00000466342 MYOZ2Q9NPC6 264 aa15.26■□□□□ 0.03
SQSTM1-206ENST00000466342 SCAF8Q9UPN6 1271 aaKnown RBP15.26■□□□□ 0.03
SQSTM1-206ENST00000466342 ELL2O00472 640 aaPredicted RBP15.25■□□□□ 0.03
SQSTM1-206ENST00000466342 NF2P35240 595 aa15.25■□□□□ 0.03
SQSTM1-206ENST00000466342 SLFN5Q08AF3 891 aa15.25■□□□□ 0.03
SQSTM1-206ENST00000466342 TSPYL6Q8N831 410 aa15.25■□□□□ 0.03
SQSTM1-206ENST00000466342 TMEM106CQ9BVX2 250 aa15.25■□□□□ 0.03
SQSTM1-206ENST00000466342 CEP290O15078 2479 aa15.25■□□□□ 0.03
SQSTM1-206ENST00000466342 LAMB1P07942 1786 aa15.24■□□□□ 0.03
SQSTM1-206ENST00000466342 A0A0C4DFX4 3053 aa15.24■□□□□ 0.03
SQSTM1-206ENST00000466342 USP17L8P0C7I0 530 aa15.24■□□□□ 0.03
SQSTM1-206ENST00000466342 PTPN12Q05209 780 aaKnown RBP15.24■□□□□ 0.03
SQSTM1-206ENST00000466342 TWISTNBQ3B726 338 aaPredicted RBP15.24■□□□□ 0.03
SQSTM1-206ENST00000466342 ERO1AQ96HE7 468 aa15.24■□□□□ 0.03
SQSTM1-206ENST00000466342 GMLQ99445 158 aa15.24■□□□□ 0.03
SQSTM1-206ENST00000466342 H0YGN5 161 aa15.23■□□□□ 0.03
SQSTM1-206ENST00000466342 EXOSC9Q06265 439 aaKnown RBP15.23■□□□□ 0.03
SQSTM1-206ENST00000466342 SF3B3Q15393 1217 aaKnown RBP15.23■□□□□ 0.03
SQSTM1-206ENST00000466342 SPRYD7Q5W111 196 aa15.23■□□□□ 0.03
SQSTM1-206ENST00000466342 IFNL1Q8IU54 200 aa15.23■□□□□ 0.03
SQSTM1-206ENST00000466342 COL6A3P12111 3177 aa15.22■□□□□ 0.03
SQSTM1-206ENST00000466342 TRIM28Q13263 835 aaKnown RBP15.22■□□□□ 0.03
SQSTM1-206ENST00000466342 ARMC9Q7Z3E5 817 aa15.22■□□□□ 0.03
SQSTM1-206ENST00000466342 CDCA7LQ96GN5 454 aa15.22■□□□□ 0.03
SQSTM1-206ENST00000466342 ISCA1Q9BUE6 129 aa15.22■□□□□ 0.03
SQSTM1-206ENST00000466342 PODXL2Q9NZ53 605 aa15.22■□□□□ 0.03
SQSTM1-206ENST00000466342 ZBED9Q6R2W3 1325 aa15.21■□□□□ 0.03
SQSTM1-206ENST00000466342 MANSC4A6NHS7 340 aaPredicted RBP15.21■□□□□ 0.03
SQSTM1-206ENST00000466342 NBPF9Q3BBW0 867 aa15.21■□□□□ 0.03
SQSTM1-206ENST00000466342 LDLRAD1Q5T700 205 aa15.21■□□□□ 0.03
SQSTM1-206ENST00000466342 CCDC30Q5VVM6 783 aa15.21■□□□□ 0.03
SQSTM1-206ENST00000466342 TRMT2AQ8IZ69 625 aaKnown RBP15.21■□□□□ 0.03
SQSTM1-206ENST00000466342 CD99L2Q8TCZ2 262 aa15.21■□□□□ 0.03
SQSTM1-206ENST00000466342 EFCC1Q9HA90 598 aa15.21■□□□□ 0.03
SQSTM1-206ENST00000466342 COL4A1P02462 1669 aa15.21■□□□□ 0.03
SQSTM1-206ENST00000466342 VAMP4O75379 141 aa15.2■□□□□ 0.02
SQSTM1-206ENST00000466342 RPS8P62241 208 aaKnown RBP15.2■□□□□ 0.02
SQSTM1-206ENST00000466342 PRKG1Q13976 671 aa15.19■□□□□ 0.02
SQSTM1-206ENST00000466342 CHRDL2Q6WN34 429 aa15.19■□□□□ 0.02
SQSTM1-206ENST00000466342 RIC3Q7Z5B4 369 aa15.19■□□□□ 0.02
SQSTM1-206ENST00000466342 NBPF11Q86T75 865 aa15.19■□□□□ 0.02
SQSTM1-206ENST00000466342 SLC10A4Q96EP9 437 aa15.19■□□□□ 0.02
SQSTM1-206ENST00000466342 ZNF333Q96JL9 665 aa15.19■□□□□ 0.02
SQSTM1-206ENST00000466342 PHAXQ9H814 394 aaKnown RBP15.19■□□□□ 0.02
SQSTM1-206ENST00000466342 USP17L3A6NCW0 530 aa15.18■□□□□ 0.02
SQSTM1-206ENST00000466342 USP17L4A6NCW7 530 aa15.18■□□□□ 0.02
SQSTM1-206ENST00000466342 ATP5J2-PTCD1G3V325 749 aa15.18■□□□□ 0.02
SQSTM1-206ENST00000466342 WNT10BO00744 389 aa15.18■□□□□ 0.02
SQSTM1-206ENST00000466342 UFL1O94874 794 aa15.18■□□□□ 0.02
SQSTM1-206ENST00000466342 USP17L1Q7RTZ2 530 aa15.18■□□□□ 0.02
SQSTM1-206ENST00000466342 FAM89AQ96GI7 184 aa15.18■□□□□ 0.02
SQSTM1-206ENST00000466342 ANKIB1Q9P2G1 1089 aa15.18■□□□□ 0.02
SQSTM1-206ENST00000466342 RBM27Q9P2N5 1060 aaKnown RBP15.18■□□□□ 0.02
SQSTM1-206ENST00000466342 GGA1Q9UJY5 639 aa15.18■□□□□ 0.02
SQSTM1-206ENST00000466342 IGF2BP3O00425 579 aaKnown RBP eCLIP15.17■□□□□ 0.02
SQSTM1-206ENST00000466342 ZBTB48P10074 688 aaPredicted RBP15.17■□□□□ 0.02
SQSTM1-206ENST00000466342 SP3Q02447 781 aa15.17■□□□□ 0.02
SQSTM1-206ENST00000466342 PODNQ7Z5L7 613 aa15.17■□□□□ 0.02
SQSTM1-206ENST00000466342 STK31Q9BXU1 1019 aa15.17■□□□□ 0.02
SQSTM1-206ENST00000466342 ANGEL1Q9UNK9 670 aaKnown RBP15.17■□□□□ 0.02
SQSTM1-206ENST00000466342 DDX58O95786 925 aaKnown RBP15.16■□□□□ 0.02
SQSTM1-206ENST00000466342 SLC4A8Q2Y0W8 1093 aa15.16■□□□□ 0.02
SQSTM1-206ENST00000466342 OTUD7BQ6GQQ9 843 aa15.16■□□□□ 0.02
SQSTM1-206ENST00000466342 OGFOD1Q8N543 542 aa15.16■□□□□ 0.02
SQSTM1-206ENST00000466342 ZNF428Q96B54 188 aa15.16■□□□□ 0.02
SQSTM1-206ENST00000466342 ZNF646O15015 1829 aaPredicted RBP15.15■□□□□ 0.02
SQSTM1-206ENST00000466342 HSP90B1P14625 803 aaKnown RBP15.15■□□□□ 0.02
SQSTM1-206ENST00000466342 MNX1P50219 401 aaPredicted RBP15.15■□□□□ 0.02
SQSTM1-206ENST00000466342 CRHR2Q13324 411 aa15.15■□□□□ 0.02
SQSTM1-206ENST00000466342 SLC9C1Q4G0N8 1177 aa15.15■□□□□ 0.02
SQSTM1-206ENST00000466342 RANBP2P49792 3224 aaKnown RBP15.15■□□□□ 0.02
SQSTM1-206ENST00000466342 MMP14P50281 582 aa15.14■□□□□ 0.01
SQSTM1-206ENST00000466342 CAP1Q01518 475 aa15.14■□□□□ 0.01
SQSTM1-206ENST00000466342 ARHGEF6Q15052 776 aa15.14■□□□□ 0.01
SQSTM1-206ENST00000466342 MAP3K11Q16584 847 aa15.14■□□□□ 0.01
SQSTM1-206ENST00000466342 ZBTB38Q8NAP3 1195 aaPredicted RBP15.14■□□□□ 0.01
SQSTM1-206ENST00000466342 CCDC191Q8NCU4 936 aa15.14■□□□□ 0.01
SQSTM1-206ENST00000466342 WNK4Q96J92 1243 aa15.14■□□□□ 0.01
SQSTM1-206ENST00000466342 METTL22Q9BUU2 404 aaPredicted RBP15.14■□□□□ 0.01
SQSTM1-206ENST00000466342 IRS4O14654 1257 aaPredicted RBP15.13■□□□□ 0.01
SQSTM1-206ENST00000466342 SLC4A2P04920 1241 aa15.13■□□□□ 0.01
SQSTM1-206ENST00000466342 CT47B1P0C2W7 299 aaPredicted RBP15.13■□□□□ 0.01
SQSTM1-206ENST00000466342 APOBEC3FQ8IUX4 373 aaKnown RBP15.13■□□□□ 0.01
SQSTM1-206ENST00000466342 MYD88Q99836 296 aa15.13■□□□□ 0.01
Retrieved 100 of 20,778 RNA–protein pairs in 158.9 ms