RNA–Protein interactions for RNA: ENST00000466285.1

COL6A1-203, Transcript of collagen type VI alpha 1 chain, humanhuman

TSL 3

Gene COL6A1, Length 500 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A1-203ENST00000466285 AGBL3Q8NEM8 1001 aa26.42■■□□□ 1.82
COL6A1-203ENST00000466285 AKAP11Q9UKA4 1901 aa26.41■■□□□ 1.82
COL6A1-203ENST00000466285 NOGQ13253 232 aa26.41■■□□□ 1.82
COL6A1-203ENST00000466285 DACT2Q5SW24 774 aa26.41■■□□□ 1.82
COL6A1-203ENST00000466285 MOB2Q70IA6 237 aa26.41■■□□□ 1.82
COL6A1-203ENST00000466285 MYOZ2Q9NPC6 264 aa26.41■■□□□ 1.82
COL6A1-203ENST00000466285 USP17L3A6NCW0 530 aa26.4■■□□□ 1.82
COL6A1-203ENST00000466285 USP17L4A6NCW7 530 aa26.4■■□□□ 1.82
COL6A1-203ENST00000466285 SNAP23O00161 211 aa26.4■■□□□ 1.82
COL6A1-203ENST00000466285 USP17L8P0C7I0 530 aa26.4■■□□□ 1.82
COL6A1-203ENST00000466285 USP17L1Q7RTZ2 530 aa26.4■■□□□ 1.82
COL6A1-203ENST00000466285 SULF1Q8IWU6 871 aa26.4■■□□□ 1.82
COL6A1-203ENST00000466285 VAMP4O75379 141 aa26.39■■□□□ 1.82
COL6A1-203ENST00000466285 ITGA6P23229 1130 aa26.39■■□□□ 1.82
COL6A1-203ENST00000466285 EXOSC9Q06265 439 aaKnown RBP26.39■■□□□ 1.82
COL6A1-203ENST00000466285 FKBP5Q13451 457 aaPredicted RBP26.39■■□□□ 1.82
COL6A1-203ENST00000466285 NBPF9Q3BBW0 867 aa26.39■■□□□ 1.82
COL6A1-203ENST00000466285 DNAAF4Q8WXU2 420 aa26.39■■□□□ 1.82
COL6A1-203ENST00000466285 F6X3S4 739 aa26.38■■□□□ 1.81
COL6A1-203ENST00000466285 KIF23Q02241 960 aaPredicted RBP26.38■■□□□ 1.81
COL6A1-203ENST00000466285 PRAMEF18Q5VWM3 479 aa26.38■■□□□ 1.81
COL6A1-203ENST00000466285 PODNQ7Z5L7 613 aa26.38■■□□□ 1.81
COL6A1-203ENST00000466285 C2orf69Q8N8R5 385 aa26.38■■□□□ 1.81
COL6A1-203ENST00000466285 PLA2G12BQ9BX93 195 aa26.38■■□□□ 1.81
COL6A1-203ENST00000466285 SLC10A3P09131 477 aa26.37■■□□□ 1.81
COL6A1-203ENST00000466285 FBXW7Q969H0 707 aa26.37■■□□□ 1.81
COL6A1-203ENST00000466285 MCOLN1Q9GZU1 580 aa26.37■■□□□ 1.81
COL6A1-203ENST00000466285 IRS2Q9Y4H2 1338 aa26.37■■□□□ 1.81
COL6A1-203ENST00000466285 ZNF157P51786 506 aaPredicted RBP26.36■■□□□ 1.81
COL6A1-203ENST00000466285 CA12O43570 354 aa26.35■■□□□ 1.81
COL6A1-203ENST00000466285 SASH1O94885 1247 aa26.35■■□□□ 1.81
COL6A1-203ENST00000466285 CSF1RP07333 972 aa26.35■■□□□ 1.81
COL6A1-203ENST00000466285 RASAL3Q86YV0 1011 aa26.35■■□□□ 1.81
COL6A1-203ENST00000466285 CHMP4AQ9BY43 222 aa26.35■■□□□ 1.81
COL6A1-203ENST00000466285 LINS1Q8NG48 757 aa26.34■■□□□ 1.81
COL6A1-203ENST00000466285 ECM29Q5VYK3 1845 aa26.34■■□□□ 1.81
COL6A1-203ENST00000466285 ZNF804BA4D1E1 1349 aa26.34■■□□□ 1.81
COL6A1-203ENST00000466285 CCDC85CA6NKD9 419 aa26.33■■□□□ 1.81
COL6A1-203ENST00000466285 IGHMBP2P38935 993 aaKnown RBP26.33■■□□□ 1.81
COL6A1-203ENST00000466285 FOXO4P98177 505 aa26.33■■□□□ 1.81
COL6A1-203ENST00000466285 EPHA10Q5JZY3 1008 aa26.33■■□□□ 1.81
COL6A1-203ENST00000466285 PITPNM2Q9BZ72 1349 aa26.33■■□□□ 1.81
COL6A1-203ENST00000466285 CHRNDQ07001 517 aa26.32■■□□□ 1.8
COL6A1-203ENST00000466285 HELBQ8NG08 1087 aaPredicted RBP26.32■■□□□ 1.8
COL6A1-203ENST00000466285 WNT10BO00744 389 aa26.31■■□□□ 1.8
COL6A1-203ENST00000466285 TAF5LO75529 589 aa26.31■■□□□ 1.8
COL6A1-203ENST00000466285 NCBP3Q53F19 620 aaKnown RBP26.31■■□□□ 1.8
COL6A1-203ENST00000466285 BEND3Q5T5X7 828 aa26.31■■□□□ 1.8
COL6A1-203ENST00000466285 COA1Q9GZY4 146 aa26.31■■□□□ 1.8
COL6A1-203ENST00000466285 RNF186Q9NXI6 227 aa26.31■■□□□ 1.8
COL6A1-203ENST00000466285 STRIP1Q5VSL9 837 aa26.3■■□□□ 1.8
COL6A1-203ENST00000466285 WDR63Q8IWG1 891 aa26.3■■□□□ 1.8
COL6A1-203ENST00000466285 CSRNP1Q96S65 589 aa26.3■■□□□ 1.8
COL6A1-203ENST00000466285 MYH16Q9H6N6 1097 aa26.3■■□□□ 1.8
COL6A1-203ENST00000466285 LEMD3Q9Y2U8 911 aa26.3■■□□□ 1.8
COL6A1-203ENST00000466285 PCDHAC2Q9Y5I4 1007 aa26.3■■□□□ 1.8
COL6A1-203ENST00000466285 DGKZQ13574 1117 aa26.29■■□□□ 1.8
COL6A1-203ENST00000466285 KIAA0825Q8IV33 1275 aa26.29■■□□□ 1.8
COL6A1-203ENST00000466285 CERS5Q8N5B7 392 aa26.29■■□□□ 1.8
COL6A1-203ENST00000466285 CCDC102AQ96A19 550 aa26.29■■□□□ 1.8
COL6A1-203ENST00000466285 UBE2Q2LH0YL09 131 aa26.28■■□□□ 1.8
COL6A1-203ENST00000466285 TRPA1O75762 1119 aa26.28■■□□□ 1.8
COL6A1-203ENST00000466285 GTF2IP78347 998 aa26.28■■□□□ 1.8
COL6A1-203ENST00000466285 ZNF594Q96JF6 807 aaPredicted RBP26.28■■□□□ 1.8
COL6A1-203ENST00000466285 MPHOSPH8Q99549 860 aa26.28■■□□□ 1.8
COL6A1-203ENST00000466285 FZD1Q9UP38 647 aa26.28■■□□□ 1.8
COL6A1-203ENST00000466285 AOX1Q06278 1338 aa26.28■■□□□ 1.8
COL6A1-203ENST00000466285 SSC5DA1L4H1 1573 aa26.28■■□□□ 1.8
COL6A1-203ENST00000466285 ARAP2Q8WZ64 1704 aa26.28■■□□□ 1.8
COL6A1-203ENST00000466285 ZBED3Q96IU2 234 aaPredicted RBP26.27■■□□□ 1.8
COL6A1-203ENST00000466285 ANP32CO43423 234 aa26.26■■□□□ 1.79
COL6A1-203ENST00000466285 ANKRD2Q9GZV1 360 aa26.26■■□□□ 1.79
COL6A1-203ENST00000466285 JAG2Q9Y219 1238 aa26.26■■□□□ 1.79
COL6A1-203ENST00000466285 TNRC18O15417 2968 aaPredicted RBP26.25■■□□□ 1.79
COL6A1-203ENST00000466285 MYO3BQ8WXR4 1341 aa26.25■■□□□ 1.79
COL6A1-203ENST00000466285 ANKRD18BA2A2Z9 1011 aa26.25■■□□□ 1.79
COL6A1-203ENST00000466285 TTLL5Q6EMB2 1281 aa26.25■■□□□ 1.79
COL6A1-203ENST00000466285 CD209Q9NNX6 404 aa26.25■■□□□ 1.79
COL6A1-203ENST00000466285 SAGE1Q9NXZ1 904 aa26.25■■□□□ 1.79
COL6A1-203ENST00000466285 CHMP3Q9Y3E7 222 aa26.25■■□□□ 1.79
COL6A1-203ENST00000466285 ZNF316A6NFI3 1004 aaPredicted RBP26.24■■□□□ 1.79
COL6A1-203ENST00000466285 KCNJ4P48050 445 aa26.23■■□□□ 1.79
COL6A1-203ENST00000466285 LMBR1LQ6UX01 489 aa26.23■■□□□ 1.79
COL6A1-203ENST00000466285 FAM9BQ8IZU0 186 aa26.23■■□□□ 1.79
COL6A1-203ENST00000466285 OTOFQ9HC10 1997 aa26.23■■□□□ 1.79
COL6A1-203ENST00000466285 FKBP1BP68106 108 aa26.22■■□□□ 1.79
COL6A1-203ENST00000466285 MKRN3Q13064 507 aaKnown RBP26.22■■□□□ 1.79
COL6A1-203ENST00000466285 LAMB1P07942 1786 aa26.21■■□□□ 1.79
COL6A1-203ENST00000466285 GRM8O00222 908 aa26.21■■□□□ 1.79
COL6A1-203ENST00000466285 IFIT5Q13325 482 aaKnown RBP26.21■■□□□ 1.79
COL6A1-203ENST00000466285 PRKG1Q13976 671 aa26.21■■□□□ 1.79
COL6A1-203ENST00000466285 OGFOD1Q8N543 542 aa26.21■■□□□ 1.79
COL6A1-203ENST00000466285 KAZALD1Q96I82 304 aa26.21■■□□□ 1.79
COL6A1-203ENST00000466285 ZNF521Q96K83 1311 aa26.19■■□□□ 1.78
COL6A1-203ENST00000466285 F8W031 263 aaPredicted RBP26.19■■□□□ 1.78
COL6A1-203ENST00000466285 TTLL12Q14166 644 aaPredicted RBP26.19■■□□□ 1.78
COL6A1-203ENST00000466285 C15orf52Q6ZUT6 534 aaKnown RBP26.19■■□□□ 1.78
COL6A1-203ENST00000466285 SUCLG2Q96I99 432 aa26.19■■□□□ 1.78
COL6A1-203ENST00000466285 RGS19P49795 217 aa26.18■■□□□ 1.78
COL6A1-203ENST00000466285 PUS3Q9BZE2 481 aaKnown RBP26.18■■□□□ 1.78
Retrieved 100 of 20,778 RNA–protein pairs in 37.2 ms