RNA–Protein interactions for RNA: ENST00000465627.5

UBA3-208, Transcript of ubiquitin like modifier activating enzyme 3, human

TSL 2

Gene UBA3, Length 1,388 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
UBA3-208	ENST00000465627	SASH1	O94885	1247 aa		10.91	□□□□□ -0.66
UBA3-208	ENST00000465627	HMGB2	P26583	209 aa	Known RBP	10.91	□□□□□ -0.66
UBA3-208	ENST00000465627	DGKZ	Q13574	1117 aa		10.91	□□□□□ -0.66
UBA3-208	ENST00000465627	TRAPPC3L	Q5T215	181 aa		10.91	□□□□□ -0.66
UBA3-208	ENST00000465627	USPL1	Q5W0Q7	1092 aa		10.91	□□□□□ -0.66
UBA3-208	ENST00000465627	PLEKHM2	Q8IWE5	1019 aa		10.91	□□□□□ -0.66
UBA3-208	ENST00000465627	TTLL11	Q8NHH1	800 aa		10.91	□□□□□ -0.66
UBA3-208	ENST00000465627	OTUD7A	Q8TE49	926 aa	Predicted RBP	10.91	□□□□□ -0.66
UBA3-208	ENST00000465627	PA2G4	Q9UQ80	394 aa	Known RBP	10.91	□□□□□ -0.66
UBA3-208	ENST00000465627	NIP7	Q9Y221	180 aa	Known RBP eCLIP	10.91	□□□□□ -0.66
UBA3-208	ENST00000465627	COL4A1	P02462	1669 aa		10.91	□□□□□ -0.66
UBA3-208	ENST00000465627	RTL9	Q8NET4	1388 aa		10.91	□□□□□ -0.66
UBA3-208	ENST00000465627	NRXN2	Q9P2S2	1712 aa		10.91	□□□□□ -0.66
UBA3-208	ENST00000465627	SURF6	O75683	361 aa	Known RBP	10.9	□□□□□ -0.66
UBA3-208	ENST00000465627	GYS1	P13807	737 aa		10.9	□□□□□ -0.66
UBA3-208	ENST00000465627	DPEP1	P16444	411 aa		10.9	□□□□□ -0.66
UBA3-208	ENST00000465627	RGS3	P49796	1198 aa		10.9	□□□□□ -0.66
UBA3-208	ENST00000465627	MAP2K1	Q02750	393 aa	Predicted RBP	10.9	□□□□□ -0.66
UBA3-208	ENST00000465627	MMRN1	Q13201	1228 aa		10.9	□□□□□ -0.66
UBA3-208	ENST00000465627	RTL5	Q5HYW3	569 aa	Predicted RBP	10.9	□□□□□ -0.66
UBA3-208	ENST00000465627	SLC10A5	Q5PT55	438 aa		10.9	□□□□□ -0.66
UBA3-208	ENST00000465627	NPM2	Q86SE8	214 aa	Known RBP	10.9	□□□□□ -0.66
UBA3-208	ENST00000465627	RHPN1	Q8TCX5	695 aa		10.9	□□□□□ -0.66
UBA3-208	ENST00000465627	UTP14A	Q9BVJ6	771 aa	Known RBP	10.9	□□□□□ -0.66
UBA3-208	ENST00000465627	LRRCC1	Q9C099	1032 aa		10.9	□□□□□ -0.66
UBA3-208	ENST00000465627	OSBPL3	Q9H4L5	887 aa		10.9	□□□□□ -0.66
UBA3-208	ENST00000465627	TRMT112	Q9UI30	125 aa	Known RBP	10.9	□□□□□ -0.66
UBA3-208	ENST00000465627	TIAM2	Q8IVF5	1701 aa		10.9	□□□□□ -0.66
UBA3-208	ENST00000465627	SH3TC1	Q8TE82	1336 aa		10.9	□□□□□ -0.66
UBA3-208	ENST00000465627	RIC1	Q4ADV7	1423 aa		10.9	□□□□□ -0.66
UBA3-208	ENST00000465627	IRS4	O14654	1257 aa	Predicted RBP	10.9	□□□□□ -0.67
UBA3-208	ENST00000465627	PDE8A	O60658	829 aa		10.9	□□□□□ -0.67
UBA3-208	ENST00000465627	TM4SF1	P30408	202 aa		10.9	□□□□□ -0.67
UBA3-208	ENST00000465627	CTSW	P56202	376 aa		10.9	□□□□□ -0.67
UBA3-208	ENST00000465627	C8orf34	Q49A92	452 aa		10.9	□□□□□ -0.67
UBA3-208	ENST00000465627	ATG9A	Q7Z3C6	839 aa		10.9	□□□□□ -0.67
UBA3-208	ENST00000465627	KLHDC4	Q8TBB5	520 aa		10.9	□□□□□ -0.67
UBA3-208	ENST00000465627	KIF1BP	Q96EK5	621 aa		10.9	□□□□□ -0.67
UBA3-208	ENST00000465627	STAP2	Q9UGK3	403 aa		10.9	□□□□□ -0.67
UBA3-208	ENST00000465627	ABCC12	Q96J65	1359 aa		10.89	□□□□□ -0.67
UBA3-208	ENST00000465627	GLTPD2	A6NH11	291 aa		10.89	□□□□□ -0.67
UBA3-208	ENST00000465627	ZPR1	O75312	459 aa		10.89	□□□□□ -0.67
UBA3-208	ENST00000465627	HSP90AB4P	Q58FF6	505 aa		10.89	□□□□□ -0.67
UBA3-208	ENST00000465627	TSHZ2	Q9NRE2	1034 aa		10.89	□□□□□ -0.67
UBA3-208	ENST00000465627	WDR33	Q9C0J8	1336 aa	Known RBP	10.89	□□□□□ -0.67
UBA3-208	ENST00000465627	THSD7B	Q9C0I4	1608 aa		10.88	□□□□□ -0.67
UBA3-208	ENST00000465627		A0A1B0GUL6	1792 aa		10.88	□□□□□ -0.67
UBA3-208	ENST00000465627	FAM205C	A6NFA0	338 aa		10.88	□□□□□ -0.67
UBA3-208	ENST00000465627	CIAO1	O76071	339 aa		10.88	□□□□□ -0.67
UBA3-208	ENST00000465627	RFC4	P35249	363 aa		10.88	□□□□□ -0.67
UBA3-208	ENST00000465627	NFIX	Q14938	502 aa		10.88	□□□□□ -0.67
UBA3-208	ENST00000465627	EFCAB3	Q8N7B9	438 aa		10.88	□□□□□ -0.67
UBA3-208	ENST00000465627	HS3ST6	Q96QI5	342 aa		10.88	□□□□□ -0.67
UBA3-208	ENST00000465627	PASK	Q96RG2	1323 aa		10.88	□□□□□ -0.67
UBA3-208	ENST00000465627	BACH2	Q9BYV9	841 aa		10.88	□□□□□ -0.67
UBA3-208	ENST00000465627	GREM2	Q9H772	168 aa		10.88	□□□□□ -0.67
UBA3-208	ENST00000465627	CARMIL3	Q8ND23	1372 aa		10.87	□□□□□ -0.67
UBA3-208	ENST00000465627	PHF14	O94880	888 aa		10.87	□□□□□ -0.67
UBA3-208	ENST00000465627	HCLS1	P14317	486 aa	Predicted RBP	10.87	□□□□□ -0.67
UBA3-208	ENST00000465627	GSPT1	P15170	499 aa	Known RBP	10.87	□□□□□ -0.67
UBA3-208	ENST00000465627	PDE1A	P54750	535 aa		10.87	□□□□□ -0.67
UBA3-208	ENST00000465627	RASSF7	Q02833	373 aa		10.87	□□□□□ -0.67
UBA3-208	ENST00000465627	SF3B3	Q15393	1217 aa	Known RBP	10.87	□□□□□ -0.67
UBA3-208	ENST00000465627	ERFE	Q4G0M1	354 aa		10.87	□□□□□ -0.67
UBA3-208	ENST00000465627	BMP2KL	Q5H9B9	411 aa		10.87	□□□□□ -0.67
UBA3-208	ENST00000465627	NUTM1	Q86Y26	1132 aa		10.87	□□□□□ -0.67
UBA3-208	ENST00000465627	ERC1	Q8IUD2	1116 aa		10.87	□□□□□ -0.67
UBA3-208	ENST00000465627	AOX1	Q06278	1338 aa		10.86	□□□□□ -0.67
UBA3-208	ENST00000465627	TMEM88B	A6NKF7	163 aa		10.86	□□□□□ -0.67
UBA3-208	ENST00000465627	EYA2	O00167	538 aa		10.86	□□□□□ -0.67
UBA3-208	ENST00000465627	APBB1	O00213	710 aa		10.86	□□□□□ -0.67
UBA3-208	ENST00000465627	KCNA3	P22001	575 aa		10.86	□□□□□ -0.67
UBA3-208	ENST00000465627	DDR1	Q08345	913 aa		10.86	□□□□□ -0.67
UBA3-208	ENST00000465627	EAF2	Q96CJ1	260 aa	Predicted RBP	10.86	□□□□□ -0.67
UBA3-208	ENST00000465627	ZNF594	Q96JF6	807 aa	Predicted RBP	10.86	□□□□□ -0.67
UBA3-208	ENST00000465627	SETDB2	Q96T68	719 aa		10.86	□□□□□ -0.67
UBA3-208	ENST00000465627	IL1RAPL2	Q9NP60	686 aa		10.86	□□□□□ -0.67
UBA3-208	ENST00000465627	RIPOR2	Q9Y4F9	1068 aa		10.86	□□□□□ -0.67
UBA3-208	ENST00000465627	ANKRD31	Q8N7Z5	1873 aa		10.86	□□□□□ -0.67
UBA3-208	ENST00000465627	TRIOBP	Q9H2D6	2365 aa		10.85	□□□□□ -0.67
UBA3-208	ENST00000465627	TAF1	P21675	1872 aa		10.85	□□□□□ -0.67
UBA3-208	ENST00000465627	ARAP2	Q8WZ64	1704 aa		10.85	□□□□□ -0.67
UBA3-208	ENST00000465627	ITGA6	P23229	1130 aa		10.85	□□□□□ -0.67
UBA3-208	ENST00000465627	TGFB2	P61812	414 aa		10.85	□□□□□ -0.67
UBA3-208	ENST00000465627	G3BP1	Q13283	466 aa	Known RBP eCLIP	10.85	□□□□□ -0.67
UBA3-208	ENST00000465627	DEFB115	Q30KQ5	88 aa		10.85	□□□□□ -0.67
UBA3-208	ENST00000465627	LRRC24	Q50LG9	513 aa		10.85	□□□□□ -0.67
UBA3-208	ENST00000465627	TTC22	Q5TAA0	569 aa		10.85	□□□□□ -0.67
UBA3-208	ENST00000465627	ZNF710	Q8N1W2	664 aa		10.85	□□□□□ -0.67
UBA3-208	ENST00000465627	VGLL2	Q8N8G2	317 aa		10.85	□□□□□ -0.67
UBA3-208	ENST00000465627	FLAD1	Q8NFF5	587 aa		10.85	□□□□□ -0.67
UBA3-208	ENST00000465627	PI4K2B	Q8TCG2	481 aa		10.85	□□□□□ -0.67
UBA3-208	ENST00000465627	PUS3	Q9BZE2	481 aa	Known RBP	10.85	□□□□□ -0.67
UBA3-208	ENST00000465627	NYX	Q9GZU5	481 aa		10.85	□□□□□ -0.67
UBA3-208	ENST00000465627	GPR108	Q9NPR9	543 aa		10.85	□□□□□ -0.67
UBA3-208	ENST00000465627	SPEF2	Q9C093	1822 aa		10.84	□□□□□ -0.67
UBA3-208	ENST00000465627	ZNF609	O15014	1411 aa		10.84	□□□□□ -0.67
UBA3-208	ENST00000465627	RASSF10	A6NK89	507 aa		10.84	□□□□□ -0.67
UBA3-208	ENST00000465627	POLRMT	O00411	1230 aa	Known RBP	10.84	□□□□□ -0.67
UBA3-208	ENST00000465627	HSP90B1	P14625	803 aa	Known RBP	10.84	□□□□□ -0.67

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