RNA–Protein interactions for RNA: ENST00000465471.5

SKA3-205, Transcript of spindle and kinetochore associated complex subunit 3, humanhuman

TSL 5

Gene SKA3, Length 930 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SKA3-205ENST00000465471 CEP85Q6P2H3 762 aa25.3■■□□□ 1.64
SKA3-205ENST00000465471 CHMP4BQ9H444 224 aaKnown RBP25.3■■□□□ 1.64
SKA3-205ENST00000465471 IL15P40933 162 aaPredicted RBP25.29■■□□□ 1.64
SKA3-205ENST00000465471 CIAPIN1Q6FI81 312 aa25.29■■□□□ 1.64
SKA3-205ENST00000465471 COA1Q9GZY4 146 aa25.29■■□□□ 1.64
SKA3-205ENST00000465471 SIL1Q9H173 461 aa25.29■■□□□ 1.64
SKA3-205ENST00000465471 PODNQ7Z5L7 613 aa25.28■■□□□ 1.64
SKA3-205ENST00000465471 ZNF609O15014 1411 aa25.28■■□□□ 1.64
SKA3-205ENST00000465471 RAD17O75943 681 aa25.27■■□□□ 1.64
SKA3-205ENST00000465471 FGFR2P21802 821 aa25.27■■□□□ 1.64
SKA3-205ENST00000465471 RRAGCQ9HB90 399 aa25.27■■□□□ 1.64
SKA3-205ENST00000465471 KCNQ5Q9NR82 932 aa25.27■■□□□ 1.64
SKA3-205ENST00000465471 ARAP2Q8WZ64 1704 aa25.26■■□□□ 1.63
SKA3-205ENST00000465471 VEGFAP15692 232 aaPredicted RBP25.26■■□□□ 1.63
SKA3-205ENST00000465471 TNIP1Q15025 636 aa25.26■■□□□ 1.63
SKA3-205ENST00000465471 GJA3Q9Y6H8 435 aa25.26■■□□□ 1.63
SKA3-205ENST00000465471 SCNN1DP51172 638 aa25.25■■□□□ 1.63
SKA3-205ENST00000465471 PUM3Q15397 648 aaKnown RBP25.25■■□□□ 1.63
SKA3-205ENST00000465471 G3V3G9 751 aa25.24■■□□□ 1.63
SKA3-205ENST00000465471 PSMD14O00487 310 aa25.24■■□□□ 1.63
SKA3-205ENST00000465471 DCAF8Q5TAQ9 597 aa25.24■■□□□ 1.63
SKA3-205ENST00000465471 IQCA1LA6NCM1 817 aa25.23■■□□□ 1.63
SKA3-205ENST00000465471 VIL1P09327 827 aaKnown RBP25.23■■□□□ 1.63
SKA3-205ENST00000465471 IL1R1P14778 569 aa25.23■■□□□ 1.63
SKA3-205ENST00000465471 RPAP2Q8IXW5 612 aaPredicted RBP25.23■■□□□ 1.63
SKA3-205ENST00000465471 CD209Q9NNX6 404 aa25.23■■□□□ 1.63
SKA3-205ENST00000465471 CEP126Q9P2H0 1117 aa25.23■■□□□ 1.63
SKA3-205ENST00000465471 NOP58Q9Y2X3 529 aaKnown RBP25.23■■□□□ 1.63
SKA3-205ENST00000465471 ZNF804AQ7Z570 1209 aa25.22■■□□□ 1.63
SKA3-205ENST00000465471 SIRT2Q8IXJ6 389 aa25.22■■□□□ 1.63
SKA3-205ENST00000465471 FAM84BQ96KN1 310 aaPredicted RBP25.22■■□□□ 1.63
SKA3-205ENST00000465471 ADAMTSL1Q8N6G6 1762 aa25.22■■□□□ 1.63
SKA3-205ENST00000465471 GMPSP49915 693 aaPredicted RBP25.21■■□□□ 1.63
SKA3-205ENST00000465471 LPIN2Q92539 896 aa25.21■■□□□ 1.63
SKA3-205ENST00000465471 HACL1Q9UJ83 578 aa25.21■■□□□ 1.63
SKA3-205ENST00000465471 USP17L3A6NCW0 530 aa25.2■■□□□ 1.62
SKA3-205ENST00000465471 USP17L4A6NCW7 530 aa25.2■■□□□ 1.62
SKA3-205ENST00000465471 USP17L1Q7RTZ2 530 aa25.2■■□□□ 1.62
SKA3-205ENST00000465471 FBXO33Q7Z6M2 555 aa25.2■■□□□ 1.62
SKA3-205ENST00000465471 TAF1DQ9H5J8 278 aaPredicted RBP25.2■■□□□ 1.62
SKA3-205ENST00000465471 GPRC5DQ9NZD1 345 aa25.2■■□□□ 1.62
SKA3-205ENST00000465471 SASH1O94885 1247 aa25.19■■□□□ 1.62
SKA3-205ENST00000465471 IFIT1P09914 478 aaKnown RBP25.19■■□□□ 1.62
SKA3-205ENST00000465471 RPS12P25398 132 aaKnown RBP25.19■■□□□ 1.62
SKA3-205ENST00000465471 GYG1P46976 350 aa25.19■■□□□ 1.62
SKA3-205ENST00000465471 ATP2B3Q16720 1220 aa25.19■■□□□ 1.62
SKA3-205ENST00000465471 STRIP1Q5VSL9 837 aa25.19■■□□□ 1.62
SKA3-205ENST00000465471 DPF2Q92785 391 aa25.19■■□□□ 1.62
SKA3-205ENST00000465471 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP25.19■■□□□ 1.62
SKA3-205ENST00000465471 SLC5A1P13866 664 aa25.18■■□□□ 1.62
SKA3-205ENST00000465471 HIBADHP31937 336 aaKnown RBP25.18■■□□□ 1.62
SKA3-205ENST00000465471 TFCP2Q12800 502 aa25.18■■□□□ 1.62
SKA3-205ENST00000465471 G3BP1Q13283 466 aaKnown RBP eCLIP25.18■■□□□ 1.62
SKA3-205ENST00000465471 DACT2Q5SW24 774 aa25.18■■□□□ 1.62
SKA3-205ENST00000465471 RSBN1LQ6PCB5 846 aaPredicted RBP25.18■■□□□ 1.62
SKA3-205ENST00000465471 TDRD7Q8NHU6 1098 aaKnown RBP25.18■■□□□ 1.62
SKA3-205ENST00000465471 GMLQ99445 158 aa25.18■■□□□ 1.62
SKA3-205ENST00000465471 ZBTB12Q9Y330 459 aaPredicted RBP25.18■■□□□ 1.62
SKA3-205ENST00000465471 SURF6O75683 361 aaKnown RBP25.17■■□□□ 1.62
SKA3-205ENST00000465471 EPHX2P34913 555 aa25.17■■□□□ 1.62
SKA3-205ENST00000465471 EPS15P42566 896 aa25.17■■□□□ 1.62
SKA3-205ENST00000465471 AGBL3Q8NEM8 1001 aa25.17■■□□□ 1.62
SKA3-205ENST00000465471 CRBNQ96SW2 442 aa25.17■■□□□ 1.62
SKA3-205ENST00000465471 TOMM70O94826 608 aa25.16■■□□□ 1.62
SKA3-205ENST00000465471 LMOD1P29536 600 aaPredicted RBP25.16■■□□□ 1.62
SKA3-205ENST00000465471 CAVIN4Q5BKX8 364 aa25.15■■□□□ 1.62
SKA3-205ENST00000465471 AKAP2Q9Y2D5 859 aa25.15■■□□□ 1.62
SKA3-205ENST00000465471 SUPT16HQ9Y5B9 1047 aaKnown RBP25.15■■□□□ 1.62
SKA3-205ENST00000465471 FAM205AQ6ZU69 1335 aa25.14■■□□□ 1.62
SKA3-205ENST00000465471 ZBTB22O15209 634 aa25.14■■□□□ 1.62
SKA3-205ENST00000465471 HMMRO75330 724 aa25.14■■□□□ 1.62
SKA3-205ENST00000465471 BCAMP50895 628 aa25.14■■□□□ 1.62
SKA3-205ENST00000465471 GTF2IP78347 998 aa25.14■■□□□ 1.62
SKA3-205ENST00000465471 TTLL5Q6EMB2 1281 aa25.14■■□□□ 1.62
SKA3-205ENST00000465471 RBM46Q8TBY0 533 aaKnown RBP25.14■■□□□ 1.62
SKA3-205ENST00000465471 MYH13Q9UKX3 1938 aa25.14■■□□□ 1.61
SKA3-205ENST00000465471 MYO3BQ8WXR4 1341 aa25.13■■□□□ 1.61
SKA3-205ENST00000465471 SHTN1A0MZ66 631 aa25.13■■□□□ 1.61
SKA3-205ENST00000465471 PNMA8AQ86V59 439 aaPredicted RBP25.13■■□□□ 1.61
SKA3-205ENST00000465471 MICALL2Q8IY33 904 aa25.13■■□□□ 1.61
SKA3-205ENST00000465471 GPR108Q9NPR9 543 aa25.13■■□□□ 1.61
SKA3-205ENST00000465471 ADARB2Q9NS39 739 aaKnown RBP25.13■■□□□ 1.61
SKA3-205ENST00000465471 CNOT7Q9UIV1 285 aaKnown RBP25.13■■□□□ 1.61
SKA3-205ENST00000465471 A0A1B0GUL7 405 aa25.12■■□□□ 1.61
SKA3-205ENST00000465471 POTEIP0CG38 1075 aa25.12■■□□□ 1.61
SKA3-205ENST00000465471 POTEJP0CG39 1038 aa25.12■■□□□ 1.61
SKA3-205ENST00000465471 FKBP1AP62942 108 aaKnown RBP25.12■■□□□ 1.61
SKA3-205ENST00000465471 C16orf71Q8IYS4 520 aaPredicted RBP25.12■■□□□ 1.61
SKA3-205ENST00000465471 MXD3Q9BW11 206 aa25.12■■□□□ 1.61
SKA3-205ENST00000465471 EXOC6BQ9Y2D4 811 aa25.12■■□□□ 1.61
SKA3-205ENST00000465471 ADORA1P30542 326 aa25.11■■□□□ 1.61
SKA3-205ENST00000465471 ZNF280AP59817 542 aaPredicted RBP25.11■■□□□ 1.61
SKA3-205ENST00000465471 TIMM10P62072 90 aa25.11■■□□□ 1.61
SKA3-205ENST00000465471 USP50Q70EL3 339 aaPredicted RBP25.11■■□□□ 1.61
SKA3-205ENST00000465471 VPS37DQ86XT2 251 aa25.11■■□□□ 1.61
SKA3-205ENST00000465471 CERS5Q8N5B7 392 aa25.11■■□□□ 1.61
SKA3-205ENST00000465471 COL1A1P02452 1464 aaPredicted RBP25.1■■□□□ 1.61
SKA3-205ENST00000465471 OS9Q13438 667 aaPredicted RBP25.1■■□□□ 1.61
SKA3-205ENST00000465471 H7C1D1 291 aa25.09■■□□□ 1.61
SKA3-205ENST00000465471 HSP90AB4PQ58FF6 505 aa25.09■■□□□ 1.61
Retrieved 100 of 20,778 RNA–protein pairs in 36.1 ms