RNA–Protein interactions for RNA: ENST00000460593.1

CPSF3-202, Transcript of cleavage and polyadenylation specific factor 3, humanhuman

TSL 1 (best) BASIC

Gene CPSF3, Length 3,157 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF3-202ENST00000460593 RIMBP3CA6NJZ7 1639 aa13.6□□□□□ -0.23
CPSF3-202ENST00000460593 RIMBP3BA6NNM3 1639 aa13.6□□□□□ -0.23
CPSF3-202ENST00000460593 RIMBP3Q9UFD9 1639 aa13.6□□□□□ -0.23
CPSF3-202ENST00000460593 SETD1AO15047 1707 aaKnown RBP13.59□□□□□ -0.23
CPSF3-202ENST00000460593 EIF4A1P60842 406 aaKnown RBP13.59□□□□□ -0.23
CPSF3-202ENST00000460593 NCAPHQ15003 741 aa13.59□□□□□ -0.23
CPSF3-202ENST00000460593 TFRCP02786 760 aaKnown RBP13.59□□□□□ -0.23
CPSF3-202ENST00000460593 SKIDA1Q1XH10 827 aa13.59□□□□□ -0.23
CPSF3-202ENST00000460593 WWC2Q6AWC2 1192 aa13.59□□□□□ -0.23
CPSF3-202ENST00000460593 TXLNBQ8N3L3 684 aa13.59□□□□□ -0.23
CPSF3-202ENST00000460593 IRX2Q9BZI1 471 aaPredicted RBP13.59□□□□□ -0.23
CPSF3-202ENST00000460593 RASSF4Q9H2L5 321 aa13.59□□□□□ -0.23
CPSF3-202ENST00000460593 MON2Q7Z3U7 1717 aa13.59□□□□□ -0.23
CPSF3-202ENST00000460593 ROBO2Q9HCK4 1378 aa13.59□□□□□ -0.23
CPSF3-202ENST00000460593 GNG11P61952 73 aa13.59□□□□□ -0.23
CPSF3-202ENST00000460593 PAXIP1Q6ZW49 1069 aaPredicted RBP13.59□□□□□ -0.23
CPSF3-202ENST00000460593 DESI2Q9BSY9 194 aa13.59□□□□□ -0.23
CPSF3-202ENST00000460593 PLEKHA4Q9H4M7 779 aa13.59□□□□□ -0.23
CPSF3-202ENST00000460593 IMPACTQ9P2X3 320 aa13.59□□□□□ -0.23
CPSF3-202ENST00000460593 MARCKSP29966 332 aaPredicted RBP13.58□□□□□ -0.24
CPSF3-202ENST00000460593 KARSQ15046 597 aaKnown RBP13.58□□□□□ -0.24
CPSF3-202ENST00000460593 CFAP100Q494V2 611 aa13.58□□□□□ -0.24
CPSF3-202ENST00000460593 PARD6BQ9BYG5 372 aa13.58□□□□□ -0.24
CPSF3-202ENST00000460593 SUGCTQ9HAC7 445 aa13.58□□□□□ -0.24
CPSF3-202ENST00000460593 KCND1Q9NSA2 647 aa13.58□□□□□ -0.24
CPSF3-202ENST00000460593 FLT4P35916 1363 aa13.58□□□□□ -0.24
CPSF3-202ENST00000460593 VWA3AA6NCI4 1184 aa13.58□□□□□ -0.24
CPSF3-202ENST00000460593 SERPINC1P01008 464 aa13.58□□□□□ -0.24
CPSF3-202ENST00000460593 NLRP6P59044 892 aa13.58□□□□□ -0.24
CPSF3-202ENST00000460593 STK38Q15208 465 aa13.58□□□□□ -0.24
CPSF3-202ENST00000460593 MPRIPQ6WCQ1 1025 aa13.58□□□□□ -0.24
CPSF3-202ENST00000460593 PDILTQ8N807 584 aa13.58□□□□□ -0.24
CPSF3-202ENST00000460593 KDRP35968 1356 aa13.58□□□□□ -0.24
CPSF3-202ENST00000460593 NEDD4P46934 1319 aa13.58□□□□□ -0.24
CPSF3-202ENST00000460593 SLC3A2P08195 630 aaKnown RBP13.57□□□□□ -0.24
CPSF3-202ENST00000460593 MCM6Q14566 821 aa13.57□□□□□ -0.24
CPSF3-202ENST00000460593 C14orf37Q86TY3 774 aa13.57□□□□□ -0.24
CPSF3-202ENST00000460593 SMARCC2Q8TAQ2 1214 aa13.57□□□□□ -0.24
CPSF3-202ENST00000460593 HSD3B7Q9H2F3 369 aa13.57□□□□□ -0.24
CPSF3-202ENST00000460593 ADAM21Q9UKJ8 722 aa13.57□□□□□ -0.24
CPSF3-202ENST00000460593 A0A0U1RQJ8 604 aa13.57□□□□□ -0.24
CPSF3-202ENST00000460593 N4BP1O75113 896 aaKnown RBP13.57□□□□□ -0.24
CPSF3-202ENST00000460593 NGDNQ8NEJ9 315 aaKnown RBP13.57□□□□□ -0.24
CPSF3-202ENST00000460593 ATRIPQ8WXE1 791 aa13.57□□□□□ -0.24
CPSF3-202ENST00000460593 A2ML1A8K2U0 1454 aa13.57□□□□□ -0.24
CPSF3-202ENST00000460593 RGPD1P0DJD0 1748 aa13.57□□□□□ -0.24
CPSF3-202ENST00000460593 CRYBG1Q9Y4K1 1723 aa13.57□□□□□ -0.24
CPSF3-202ENST00000460593 USP6P35125 1406 aa13.57□□□□□ -0.24
CPSF3-202ENST00000460593 PXDNLA1KZ92 1463 aa13.57□□□□□ -0.24
CPSF3-202ENST00000460593 HIP1O00291 1037 aa13.57□□□□□ -0.24
CPSF3-202ENST00000460593 UBASH3AP57075 661 aa13.57□□□□□ -0.24
CPSF3-202ENST00000460593 AEBP2Q6ZN18 517 aaPredicted RBP13.57□□□□□ -0.24
CPSF3-202ENST00000460593 ZNF396Q96N95 335 aaPredicted RBP13.57□□□□□ -0.24
CPSF3-202ENST00000460593 PPP2R3AQ06190 1150 aa13.56□□□□□ -0.24
CPSF3-202ENST00000460593 LRRFIP1Q32MZ4 808 aaKnown RBP13.56□□□□□ -0.24
CPSF3-202ENST00000460593 EPHA10Q5JZY3 1008 aa13.56□□□□□ -0.24
CPSF3-202ENST00000460593 TOGARAM2Q6ZUX3 1019 aa13.56□□□□□ -0.24
CPSF3-202ENST00000460593 ERC1Q8IUD2 1116 aa13.56□□□□□ -0.24
CPSF3-202ENST00000460593 STK11IPQ8N1F8 1099 aa13.56□□□□□ -0.24
CPSF3-202ENST00000460593 UBXN6Q9BZV1 441 aa13.56□□□□□ -0.24
CPSF3-202ENST00000460593 PHLPP2Q6ZVD8 1323 aa13.56□□□□□ -0.24
CPSF3-202ENST00000460593 PFKFB2O60825 505 aa13.56□□□□□ -0.24
CPSF3-202ENST00000460593 PHACTR2O75167 634 aa13.56□□□□□ -0.24
CPSF3-202ENST00000460593 ADKP55263 362 aaKnown RBP13.56□□□□□ -0.24
CPSF3-202ENST00000460593 DHX58Q96C10 678 aa13.56□□□□□ -0.24
CPSF3-202ENST00000460593 FUT8Q9BYC5 575 aa13.56□□□□□ -0.24
CPSF3-202ENST00000460593 HMG20BQ9P0W2 317 aa13.56□□□□□ -0.24
CPSF3-202ENST00000460593 VPS18Q9P253 973 aa13.56□□□□□ -0.24
CPSF3-202ENST00000460593 SBNO1A3KN83 1393 aa13.55□□□□□ -0.24
CPSF3-202ENST00000460593 EFCAB8A8MWE9 144 aa13.55□□□□□ -0.24
CPSF3-202ENST00000460593 ZNF202O95125 648 aa13.55□□□□□ -0.24
CPSF3-202ENST00000460593 MTX1Q13505 466 aa13.55□□□□□ -0.24
CPSF3-202ENST00000460593 CCDC158Q5M9N0 1113 aa13.55□□□□□ -0.24
CPSF3-202ENST00000460593 NBPF6Q5VWK0 638 aa13.55□□□□□ -0.24
CPSF3-202ENST00000460593 NBPF4Q96M43 638 aa13.55□□□□□ -0.24
CPSF3-202ENST00000460593 PUF60Q9UHX1 559 aaKnown RBP13.55□□□□□ -0.24
CPSF3-202ENST00000460593 DBNLQ9UJU6 430 aaKnown RBP13.55□□□□□ -0.24
CPSF3-202ENST00000460593 ZNF609O15014 1411 aa13.55□□□□□ -0.24
CPSF3-202ENST00000460593 ALDH1L1O75891 902 aa13.55□□□□□ -0.24
CPSF3-202ENST00000460593 FDPSP14324 419 aaKnown RBP13.55□□□□□ -0.24
CPSF3-202ENST00000460593 PIP4K2AP48426 406 aaPredicted RBP13.55□□□□□ -0.24
CPSF3-202ENST00000460593 CREBRFQ8IUR6 639 aa13.55□□□□□ -0.24
CPSF3-202ENST00000460593 ARFGAP3Q9NP61 516 aa13.55□□□□□ -0.24
CPSF3-202ENST00000460593 TOMM22Q9NS69 142 aa13.55□□□□□ -0.24
CPSF3-202ENST00000460593 PPP2R2CQ9Y2T4 447 aa13.55□□□□□ -0.24
CPSF3-202ENST00000460593 RRP15Q9Y3B9 282 aaKnown RBP13.55□□□□□ -0.24
CPSF3-202ENST00000460593 NRDCO43847 1150 aa13.55□□□□□ -0.24
CPSF3-202ENST00000460593 HOXC9P31274 260 aa13.55□□□□□ -0.24
CPSF3-202ENST00000460593 CASQ1P31415 396 aa13.55□□□□□ -0.24
CPSF3-202ENST00000460593 MTF1Q14872 753 aa13.55□□□□□ -0.24
CPSF3-202ENST00000460593 TTLL5Q6EMB2 1281 aa13.55□□□□□ -0.24
CPSF3-202ENST00000460593 NAA16Q6N069 864 aaPredicted RBP13.55□□□□□ -0.24
CPSF3-202ENST00000460593 ALDH8A1Q9H2A2 487 aaPredicted RBP13.55□□□□□ -0.24
CPSF3-202ENST00000460593 PDE11AQ9HCR9 933 aa13.55□□□□□ -0.24
CPSF3-202ENST00000460593 BTBD11A6QL63 1104 aa13.54□□□□□ -0.24
CPSF3-202ENST00000460593 DHX16O60231 1041 aaKnown RBP13.54□□□□□ -0.24
CPSF3-202ENST00000460593 IRX3P78415 501 aaPredicted RBP13.54□□□□□ -0.24
CPSF3-202ENST00000460593 PNOCQ13519 176 aa13.54□□□□□ -0.24
CPSF3-202ENST00000460593 LONRF2Q1L5Z9 754 aa13.54□□□□□ -0.24
CPSF3-202ENST00000460593 MUM1L1Q5H9M0 696 aa13.54□□□□□ -0.24
Retrieved 100 of 20,778 RNA–protein pairs in 19.9 ms