RNA–Protein interactions for RNA: ENST00000458277.1

HMGB4-202, Transcript of high mobility group box 4, humanhuman

TSL 3

Gene HMGB4, Length 437 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB4-202ENST00000458277 UTP3Q9NQZ2 479 aaKnown RBP eCLIP6.76□□□□□ -1.33
HMGB4-202ENST00000458277 CCNB3Q8WWL7 1395 aa6.76□□□□□ -1.33
HMGB4-202ENST00000458277 ZNF608Q9ULD9 1512 aaPredicted RBP6.76□□□□□ -1.33
HMGB4-202ENST00000458277 ROCK2O75116 1388 aaKnown RBP6.75□□□□□ -1.33
HMGB4-202ENST00000458277 EIF3AQ14152 1382 aaKnown RBP6.75□□□□□ -1.33
HMGB4-202ENST00000458277 LOC102724159A0A0B4J2E5 919 aa6.75□□□□□ -1.33
HMGB4-202ENST00000458277 CCDC196A0A1B0GTZ2 297 aa6.75□□□□□ -1.33
HMGB4-202ENST00000458277 ADH7P40394 386 aa6.75□□□□□ -1.33
HMGB4-202ENST00000458277 RAC1P63000 192 aa6.75□□□□□ -1.33
HMGB4-202ENST00000458277 GPS2Q13227 327 aa6.75□□□□□ -1.33
HMGB4-202ENST00000458277 PWP2Q15269 919 aaKnown RBP6.75□□□□□ -1.33
HMGB4-202ENST00000458277 TERF2Q15554 542 aa6.75□□□□□ -1.33
HMGB4-202ENST00000458277 C8orf34Q49A92 452 aa6.75□□□□□ -1.33
HMGB4-202ENST00000458277 KRT222Q8N1A0 295 aa6.75□□□□□ -1.33
HMGB4-202ENST00000458277 FEZ2Q9UHY8 353 aaPredicted RBP6.75□□□□□ -1.33
HMGB4-202ENST00000458277 SH3BP1Q9Y3L3 701 aa6.75□□□□□ -1.33
HMGB4-202ENST00000458277 MORC2Q9Y6X9 1032 aaPredicted RBP6.75□□□□□ -1.33
HMGB4-202ENST00000458277 KIF21BO75037 1637 aa6.75□□□□□ -1.33
HMGB4-202ENST00000458277 KIF27Q86VH2 1401 aa6.75□□□□□ -1.33
HMGB4-202ENST00000458277 LILRB5O75023 590 aa6.74□□□□□ -1.33
HMGB4-202ENST00000458277 REC8O95072 547 aa6.74□□□□□ -1.33
HMGB4-202ENST00000458277 ZNF445P59923 1031 aa6.74□□□□□ -1.33
HMGB4-202ENST00000458277 HDAC1Q13547 482 aaPredicted RBP6.74□□□□□ -1.33
HMGB4-202ENST00000458277 MUM1L1Q5H9M0 696 aa6.74□□□□□ -1.33
HMGB4-202ENST00000458277 SAMD5Q5TGI4 173 aa6.74□□□□□ -1.33
HMGB4-202ENST00000458277 CAVIN1Q6NZI2 390 aaKnown RBP6.74□□□□□ -1.33
HMGB4-202ENST00000458277 TXLNBQ8N3L3 684 aa6.74□□□□□ -1.33
HMGB4-202ENST00000458277 EXOC6Q8TAG9 804 aa6.74□□□□□ -1.33
HMGB4-202ENST00000458277 ANKRD7Q92527 254 aa6.74□□□□□ -1.33
HMGB4-202ENST00000458277 TNFRSF25Q93038 417 aa6.74□□□□□ -1.33
HMGB4-202ENST00000458277 ITFG2Q969R8 447 aa6.74□□□□□ -1.33
HMGB4-202ENST00000458277 SLC24A3Q9HC58 644 aa6.74□□□□□ -1.33
HMGB4-202ENST00000458277 RUSC2Q8N2Y8 1516 aa6.74□□□□□ -1.33
HMGB4-202ENST00000458277 RAB3GAP2Q9H2M9 1393 aa6.73□□□□□ -1.33
HMGB4-202ENST00000458277 ZMYM4Q5VZL5 1548 aa6.73□□□□□ -1.33
HMGB4-202ENST00000458277 A0A1B0GUL7 405 aa6.73□□□□□ -1.33
HMGB4-202ENST00000458277 SLFN14P0C7P3 912 aa6.73□□□□□ -1.33
HMGB4-202ENST00000458277 CASQ1P31415 396 aa6.73□□□□□ -1.33
HMGB4-202ENST00000458277 USP8P40818 1118 aa6.73□□□□□ -1.33
HMGB4-202ENST00000458277 NOP2P46087 812 aaKnown RBP6.73□□□□□ -1.33
HMGB4-202ENST00000458277 EIF4G2P78344 907 aaKnown RBP eCLIP6.73□□□□□ -1.33
HMGB4-202ENST00000458277 LRCH2Q5VUJ6 765 aa6.73□□□□□ -1.33
HMGB4-202ENST00000458277 TMED8Q6PL24 325 aaPredicted RBP6.73□□□□□ -1.33
HMGB4-202ENST00000458277 C20orf204Q6ZNR8 217 aa6.73□□□□□ -1.33
HMGB4-202ENST00000458277 RAB44Q7Z6P3 723 aaPredicted RBP6.73□□□□□ -1.33
HMGB4-202ENST00000458277 NGEFQ8N5V2 710 aa6.73□□□□□ -1.33
HMGB4-202ENST00000458277 GJD4Q96KN9 370 aaPredicted RBP6.73□□□□□ -1.33
HMGB4-202ENST00000458277 SLC30A3Q99726 388 aa6.73□□□□□ -1.33
HMGB4-202ENST00000458277 GZF1Q9H116 711 aaPredicted RBP6.73□□□□□ -1.33
HMGB4-202ENST00000458277 V9GYY5 206 aaPredicted RBP6.73□□□□□ -1.33
HMGB4-202ENST00000458277 EIF4G3O43432 1585 aaKnown RBP6.73□□□□□ -1.33
HMGB4-202ENST00000458277 KDM2BQ8NHM5 1336 aa6.73□□□□□ -1.33
HMGB4-202ENST00000458277 UHRF1BP1LA0JNW5 1464 aa6.73□□□□□ -1.33
HMGB4-202ENST00000458277 TDRD9Q8NDG6 1382 aaKnown RBP6.72□□□□□ -1.33
HMGB4-202ENST00000458277 NPC1L1Q9UHC9 1359 aa6.72□□□□□ -1.33
HMGB4-202ENST00000458277 CTAGE5O15320 804 aa6.72□□□□□ -1.33
HMGB4-202ENST00000458277 HTATSF1O43719 755 aaKnown RBP6.72□□□□□ -1.33
HMGB4-202ENST00000458277 DHX16O60231 1041 aaKnown RBP6.72□□□□□ -1.33
HMGB4-202ENST00000458277 EIF3JO75822 258 aaKnown RBP6.72□□□□□ -1.33
HMGB4-202ENST00000458277 ERCC3P19447 782 aa6.72□□□□□ -1.33
HMGB4-202ENST00000458277 SARNPP82979 210 aaKnown RBP6.72□□□□□ -1.33
HMGB4-202ENST00000458277 USP4Q13107 963 aa6.72□□□□□ -1.33
HMGB4-202ENST00000458277 KLHL40Q2TBA0 621 aa6.72□□□□□ -1.33
HMGB4-202ENST00000458277 TSGA10IPQ3SY00 556 aa6.72□□□□□ -1.33
HMGB4-202ENST00000458277 MKL1Q969V6 931 aa6.72□□□□□ -1.33
HMGB4-202ENST00000458277 ZDHHC3Q9NYG2 299 aa6.72□□□□□ -1.33
HMGB4-202ENST00000458277 RSPH14Q9UHP6 348 aa6.72□□□□□ -1.33
HMGB4-202ENST00000458277 OAS3Q9Y6K5 1087 aaKnown RBP6.72□□□□□ -1.33
HMGB4-202ENST00000458277 PLEKHH2Q8IVE3 1493 aa6.72□□□□□ -1.33
HMGB4-202ENST00000458277 ABCA5Q8WWZ7 1642 aa6.72□□□□□ -1.33
HMGB4-202ENST00000458277 PLEKHD1A6NEE1 506 aa6.71□□□□□ -1.34
HMGB4-202ENST00000458277 IGSF3O75054 1194 aa6.71□□□□□ -1.34
HMGB4-202ENST00000458277 SETSIPP0DME0 302 aa6.71□□□□□ -1.34
HMGB4-202ENST00000458277 ARID4AP29374 1257 aaPredicted RBP6.71□□□□□ -1.34
HMGB4-202ENST00000458277 GDF10P55107 478 aa6.71□□□□□ -1.34
HMGB4-202ENST00000458277 ATP2B3Q16720 1220 aa6.71□□□□□ -1.34
HMGB4-202ENST00000458277 CLEC17AQ6ZS10 378 aa6.71□□□□□ -1.34
HMGB4-202ENST00000458277 TBC1D22AQ8WUA7 517 aa6.71□□□□□ -1.34
HMGB4-202ENST00000458277 PIBF1Q8WXW3 757 aa6.71□□□□□ -1.34
HMGB4-202ENST00000458277 CABP1Q9NZU7 370 aa6.71□□□□□ -1.34
HMGB4-202ENST00000458277 CEP126Q9P2H0 1117 aa6.71□□□□□ -1.34
HMGB4-202ENST00000458277 DDX41Q9UJV9 622 aaKnown RBP6.71□□□□□ -1.34
HMGB4-202ENST00000458277 PAXBP1Q9Y5B6 917 aa6.71□□□□□ -1.34
HMGB4-202ENST00000458277 PRXQ9BXM0 1461 aa6.71□□□□□ -1.34
HMGB4-202ENST00000458277 VIRMAQ69YN4 1812 aaKnown RBP6.71□□□□□ -1.34
HMGB4-202ENST00000458277 ARHGAP31Q2M1Z3 1444 aa6.7□□□□□ -1.34
HMGB4-202ENST00000458277 KLHL33A6NCF5 533 aa6.7□□□□□ -1.34
HMGB4-202ENST00000458277 H0YHG0 523 aa6.7□□□□□ -1.34
HMGB4-202ENST00000458277 CTIFO43310 598 aaKnown RBP6.7□□□□□ -1.34
HMGB4-202ENST00000458277 IPO7O95373 1038 aaKnown RBP6.7□□□□□ -1.34
HMGB4-202ENST00000458277 INHAP05111 366 aa6.7□□□□□ -1.34
HMGB4-202ENST00000458277 CAPN2P17655 700 aa6.7□□□□□ -1.34
HMGB4-202ENST00000458277 IREB2P48200 963 aaKnown RBP6.7□□□□□ -1.34
HMGB4-202ENST00000458277 SCNN1DP51172 638 aa6.7□□□□□ -1.34
HMGB4-202ENST00000458277 SMTNP53814 917 aa6.7□□□□□ -1.34
HMGB4-202ENST00000458277 NUCB2P80303 420 aa6.7□□□□□ -1.34
HMGB4-202ENST00000458277 XPCQ01831 940 aaPredicted RBP6.7□□□□□ -1.34
HMGB4-202ENST00000458277 SFSWAPQ12872 951 aaKnown RBP6.7□□□□□ -1.34
HMGB4-202ENST00000458277 HSP90AB4PQ58FF6 505 aa6.7□□□□□ -1.34
HMGB4-202ENST00000458277 CERS3Q8IU89 383 aa6.7□□□□□ -1.34
Retrieved 100 of 20,778 RNA–protein pairs in 12.3 ms