RNA–Protein interactions for RNA: ENST00000454468.5

SMPD4-213, Transcript of sphingomyelin phosphodiesterase 4, humanhuman

TSL 1 (best)

Gene SMPD4, Length 3,586 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMPD4-213ENST00000454468 ATG9AQ7Z3C6 839 aa14.07□□□□□ -0.16
SMPD4-213ENST00000454468 MYL10Q9BUA6 226 aa14.07□□□□□ -0.16
SMPD4-213ENST00000454468 TNS3Q68CZ2 1445 aa14.07□□□□□ -0.16
SMPD4-213ENST00000454468 LTN1O94822 1766 aa14.07□□□□□ -0.16
SMPD4-213ENST00000454468 BIN1O00499 593 aa14.07□□□□□ -0.16
SMPD4-213ENST00000454468 ZKSCAN3Q9BRR0 538 aa14.07□□□□□ -0.16
SMPD4-213ENST00000454468 FMN2Q9NZ56 1722 aa14.07□□□□□ -0.16
SMPD4-213ENST00000454468 PRC1O43663 620 aa14.06□□□□□ -0.16
SMPD4-213ENST00000454468 SCRN1Q12765 414 aa14.06□□□□□ -0.16
SMPD4-213ENST00000454468 SCAND2PQ9GZW5 306 aaPredicted RBP14.06□□□□□ -0.16
SMPD4-213ENST00000454468 RGPD2P0DJD1 1756 aa14.06□□□□□ -0.16
SMPD4-213ENST00000454468 RPAP1Q9BWH6 1393 aaPredicted RBP14.06□□□□□ -0.16
SMPD4-213ENST00000454468 NFAT5O94916 1531 aa14.06□□□□□ -0.16
SMPD4-213ENST00000454468 KINO60870 393 aaKnown RBP14.06□□□□□ -0.16
SMPD4-213ENST00000454468 TDO2P48775 406 aa14.06□□□□□ -0.16
SMPD4-213ENST00000454468 CLEC17AQ6ZS10 378 aa14.06□□□□□ -0.16
SMPD4-213ENST00000454468 NIP7Q9Y221 180 aaKnown RBP eCLIP14.06□□□□□ -0.16
SMPD4-213ENST00000454468 NALCNQ8IZF0 1738 aa14.06□□□□□ -0.16
SMPD4-213ENST00000454468 DDB1Q16531 1140 aa14.06□□□□□ -0.16
SMPD4-213ENST00000454468 STOX1Q6ZVD7 989 aa14.06□□□□□ -0.16
SMPD4-213ENST00000454468 ZNF592Q92610 1267 aa14.06□□□□□ -0.16
SMPD4-213ENST00000454468 INCENPQ9NQS7 918 aa14.06□□□□□ -0.16
SMPD4-213ENST00000454468 ORC3Q9UBD5 711 aaPredicted RBP14.06□□□□□ -0.16
SMPD4-213ENST00000454468 MAST3O60307 1309 aa14.05□□□□□ -0.16
SMPD4-213ENST00000454468 GPAA1O43292 621 aa14.05□□□□□ -0.16
SMPD4-213ENST00000454468 PUS7LQ9H0K6 701 aaKnown RBP14.05□□□□□ -0.16
SMPD4-213ENST00000454468 DNAJC25Q9H1X3 360 aa14.05□□□□□ -0.16
SMPD4-213ENST00000454468 ATG3Q9NT62 314 aa14.05□□□□□ -0.16
SMPD4-213ENST00000454468 RAI14Q9P0K7 980 aa14.05□□□□□ -0.16
SMPD4-213ENST00000454468 CTNNA3Q9UI47 895 aa14.05□□□□□ -0.16
SMPD4-213ENST00000454468 MST1RQ04912 1400 aa14.05□□□□□ -0.16
SMPD4-213ENST00000454468 PXDNLA1KZ92 1463 aa14.05□□□□□ -0.16
SMPD4-213ENST00000454468 ANO6Q4KMQ2 910 aa14.05□□□□□ -0.16
SMPD4-213ENST00000454468 C8orf76Q96K31 380 aa14.05□□□□□ -0.16
SMPD4-213ENST00000454468 SEC31BQ9NQW1 1179 aa14.04□□□□□ -0.16
SMPD4-213ENST00000454468 RRP9O43818 475 aaKnown RBP14.04□□□□□ -0.16
SMPD4-213ENST00000454468 FGAP02671 866 aa14.04□□□□□ -0.16
SMPD4-213ENST00000454468 PHKA1P46020 1223 aa14.04□□□□□ -0.16
SMPD4-213ENST00000454468 CHAF1AQ13111 956 aaPredicted RBP14.04□□□□□ -0.16
SMPD4-213ENST00000454468 LETM1O95202 739 aaPredicted RBP14.04□□□□□ -0.16
SMPD4-213ENST00000454468 ST3GAL1Q11201 340 aa14.04□□□□□ -0.16
SMPD4-213ENST00000454468 CCAR1Q8IX12 1150 aaKnown RBP14.04□□□□□ -0.16
SMPD4-213ENST00000454468 GTF3C6Q969F1 213 aa14.04□□□□□ -0.16
SMPD4-213ENST00000454468 TEX13AQ9BXU3 409 aaPredicted RBP14.04□□□□□ -0.16
SMPD4-213ENST00000454468 NAPBQ9H115 298 aa14.04□□□□□ -0.16
SMPD4-213ENST00000454468 CFAP45Q9UL16 551 aa14.04□□□□□ -0.16
SMPD4-213ENST00000454468 RGPD1P0DJD0 1748 aa14.03□□□□□ -0.16
SMPD4-213ENST00000454468 B4E1Z4 1266 aa14.03□□□□□ -0.16
SMPD4-213ENST00000454468 FILIP1Q7Z7B0 1213 aa14.03□□□□□ -0.16
SMPD4-213ENST00000454468 CREBRFQ8IUR6 639 aa14.03□□□□□ -0.16
SMPD4-213ENST00000454468 LEO1Q8WVC0 666 aaPredicted RBP14.03□□□□□ -0.16
SMPD4-213ENST00000454468 NR1I2O75469 434 aa14.03□□□□□ -0.16
SMPD4-213ENST00000454468 MARCKSP29966 332 aaPredicted RBP14.03□□□□□ -0.16
SMPD4-213ENST00000454468 CPLX2Q6PUV4 134 aaKnown RBP14.03□□□□□ -0.16
SMPD4-213ENST00000454468 PDZRN4Q6ZMN7 1036 aaPredicted RBP14.03□□□□□ -0.16
SMPD4-213ENST00000454468 MAGEB6Q8N7X4 407 aa14.03□□□□□ -0.16
SMPD4-213ENST00000454468 FSIP1Q8NA03 581 aa14.03□□□□□ -0.16
SMPD4-213ENST00000454468 USP42Q9H9J4 1324 aaKnown RBP14.03□□□□□ -0.16
SMPD4-213ENST00000454468 ZNF609O15014 1411 aa14.03□□□□□ -0.16
SMPD4-213ENST00000454468 TRIM29Q14134 588 aa14.03□□□□□ -0.16
SMPD4-213ENST00000454468 RABL6Q3YEC7 729 aaPredicted RBP14.03□□□□□ -0.16
SMPD4-213ENST00000454468 IGF2BP2Q9Y6M1 599 aaKnown RBP eCLIP14.03□□□□□ -0.164e-7■□□□□ 10.9
SMPD4-213ENST00000454468 XRN1Q8IZH2 1706 aaKnown RBP14.03□□□□□ -0.16
SMPD4-213ENST00000454468 HMGB1P09429 215 aaKnown RBP14.02□□□□□ -0.16
SMPD4-213ENST00000454468 IGHMBP2P38935 993 aaKnown RBP14.02□□□□□ -0.16
SMPD4-213ENST00000454468 UTYO14607 1347 aa14.02□□□□□ -0.16
SMPD4-213ENST00000454468 TYRO3Q06418 890 aa14.02□□□□□ -0.17
SMPD4-213ENST00000454468 ZBTB38Q8NAP3 1195 aaPredicted RBP14.02□□□□□ -0.17
SMPD4-213ENST00000454468 PHKBQ93100 1093 aa14.02□□□□□ -0.17
SMPD4-213ENST00000454468 MCM5P33992 734 aa14.02□□□□□ -0.17
SMPD4-213ENST00000454468 ZNF165P49910 485 aa14.02□□□□□ -0.17
SMPD4-213ENST00000454468 CMTR1Q8N1G2 835 aaKnown RBP14.02□□□□□ -0.17
SMPD4-213ENST00000454468 NCOA7Q8NI08 942 aa14.02□□□□□ -0.17
SMPD4-213ENST00000454468 ARMT1Q9H993 441 aa14.02□□□□□ -0.17
SMPD4-213ENST00000454468 HELLSQ9NRZ9 838 aa14.02□□□□□ -0.17
SMPD4-213ENST00000454468 DENND2AQ9ULE3 1009 aa14.02□□□□□ -0.17
SMPD4-213ENST00000454468 A0A1B0GVL5 298 aa14.01□□□□□ -0.17
SMPD4-213ENST00000454468 GIGYF2Q6Y7W6 1299 aaKnown RBP14.01□□□□□ -0.17
SMPD4-213ENST00000454468 NLRP10Q86W26 655 aa14.01□□□□□ -0.17
SMPD4-213ENST00000454468 PPP1R9BQ96SB3 815 aa14.01□□□□□ -0.17
SMPD4-213ENST00000454468 IFIT3O14879 490 aaKnown RBP14.01□□□□□ -0.17
SMPD4-213ENST00000454468 CTDSPL2Q05D32 466 aa14.01□□□□□ -0.17
SMPD4-213ENST00000454468 ZMYM1Q5SVZ6 1142 aa14.01□□□□□ -0.17
SMPD4-213ENST00000454468 NGLY1Q96IV0 654 aa14.01□□□□□ -0.17
SMPD4-213ENST00000454468 ZNF396Q96N95 335 aaPredicted RBP14.01□□□□□ -0.17
SMPD4-213ENST00000454468 C8orf37Q96NL8 207 aa14.01□□□□□ -0.17
SMPD4-213ENST00000454468 ZKSCAN5Q9Y2L8 839 aa14.01□□□□□ -0.17
SMPD4-213ENST00000454468 GOLGA6L6A8MZA4 724 aa14.01□□□□□ -0.17
SMPD4-213ENST00000454468 EPB41L2O43491 1005 aaKnown RBP14.01□□□□□ -0.17
SMPD4-213ENST00000454468 ZNF532Q9HCE3 1301 aa14.01□□□□□ -0.17
SMPD4-213ENST00000454468 ADD1P35611 737 aaKnown RBP14□□□□□ -0.17
SMPD4-213ENST00000454468 BCAMP50895 628 aa14□□□□□ -0.17
SMPD4-213ENST00000454468 CTSWP56202 376 aa14□□□□□ -0.17
SMPD4-213ENST00000454468 HSP90AA4PQ58FG1 418 aa14□□□□□ -0.17
SMPD4-213ENST00000454468 TTLL11Q8NHH1 800 aa14□□□□□ -0.17
SMPD4-213ENST00000454468 MAP3K15Q6ZN16 1313 aa14□□□□□ -0.17
SMPD4-213ENST00000454468 DHX16O60231 1041 aaKnown RBP14□□□□□ -0.17
SMPD4-213ENST00000454468 MBD4O95243 580 aa14□□□□□ -0.17
SMPD4-213ENST00000454468 FAM98CQ17RN3 349 aaKnown RBP14□□□□□ -0.17
SMPD4-213ENST00000454468 AIFM3Q96NN9 605 aa14□□□□□ -0.17
Retrieved 100 of 20,778 RNA–protein pairs in 17.9 ms