RNA–Protein interactions for RNA: ENST00000447124.1

SDC1-205, Transcript of syndecan 1, humanhuman

TSL 4

Gene SDC1, Length 591 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC1-205ENST00000447124 POLR2AP24928 1970 aaKnown RBP26.33■■□□□ 1.8
SDC1-205ENST00000447124 IFIT5Q13325 482 aaKnown RBP26.32■■□□□ 1.8
SDC1-205ENST00000447124 SAPCD2Q86UD0 394 aa26.32■■□□□ 1.8
SDC1-205ENST00000447124 SSH1Q8WYL5 1049 aa26.32■■□□□ 1.8
SDC1-205ENST00000447124 CAPNS2Q96L46 248 aa26.32■■□□□ 1.8
SDC1-205ENST00000447124 ZNF408Q9H9D4 720 aa26.32■■□□□ 1.8
SDC1-205ENST00000447124 C9orf78Q9NZ63 289 aaPredicted RBP26.32■■□□□ 1.8
SDC1-205ENST00000447124 CHMP3Q9Y3E7 222 aa26.32■■□□□ 1.8
SDC1-205ENST00000447124 SPEF2Q9C093 1822 aa26.32■■□□□ 1.8
SDC1-205ENST00000447124 HELBQ8NG08 1087 aaPredicted RBP26.31■■□□□ 1.8
SDC1-205ENST00000447124 KAZALD1Q96I82 304 aa26.31■■□□□ 1.8
SDC1-205ENST00000447124 COA1Q9GZY4 146 aa26.31■■□□□ 1.8
SDC1-205ENST00000447124 TAF5LO75529 589 aa26.3■■□□□ 1.8
SDC1-205ENST00000447124 DACT2Q5SW24 774 aa26.3■■□□□ 1.8
SDC1-205ENST00000447124 KRT26Q7Z3Y9 468 aa26.3■■□□□ 1.8
SDC1-205ENST00000447124 TRMT2AQ8IZ69 625 aaKnown RBP26.3■■□□□ 1.8
SDC1-205ENST00000447124 ZNF594Q96JF6 807 aaPredicted RBP26.3■■□□□ 1.8
SDC1-205ENST00000447124 ZNF609O15014 1411 aa26.3■■□□□ 1.8
SDC1-205ENST00000447124 ADM5C9JUS6 153 aa26.29■■□□□ 1.8
SDC1-205ENST00000447124 CCER2I3L3R5 266 aa26.29■■□□□ 1.8
SDC1-205ENST00000447124 NBPF7P0C2Y1 421 aaPredicted RBP26.29■■□□□ 1.8
SDC1-205ENST00000447124 USP17L8P0C7I0 530 aa26.29■■□□□ 1.8
SDC1-205ENST00000447124 DCPSQ96C86 337 aaKnown RBP26.29■■□□□ 1.8
SDC1-205ENST00000447124 SUCLG2Q96I99 432 aa26.29■■□□□ 1.8
SDC1-205ENST00000447124 IRS2Q9Y4H2 1338 aa26.29■■□□□ 1.8
SDC1-205ENST00000447124 SCARF1Q14162 830 aa26.28■■□□□ 1.8
SDC1-205ENST00000447124 PAXIP1Q6ZW49 1069 aaPredicted RBP26.28■■□□□ 1.8
SDC1-205ENST00000447124 ECE1P42892 770 aa26.27■■□□□ 1.8
SDC1-205ENST00000447124 GRM1Q13255 1194 aa26.27■■□□□ 1.8
SDC1-205ENST00000447124 STRIP1Q5VSL9 837 aa26.27■■□□□ 1.8
SDC1-205ENST00000447124 AOC2O75106 756 aa26.26■■□□□ 1.79
SDC1-205ENST00000447124 CCDC57Q2TAC2 916 aa26.26■■□□□ 1.79
SDC1-205ENST00000447124 MYOZ2Q9NPC6 264 aa26.26■■□□□ 1.79
SDC1-205ENST00000447124 GGA3Q9NZ52 723 aa26.26■■□□□ 1.79
SDC1-205ENST00000447124 UTYO14607 1347 aa26.25■■□□□ 1.79
SDC1-205ENST00000447124 TTLL5Q6EMB2 1281 aa26.25■■□□□ 1.79
SDC1-205ENST00000447124 HHIPL1Q96JK4 782 aa26.25■■□□□ 1.79
SDC1-205ENST00000447124 CD209Q9NNX6 404 aa26.25■■□□□ 1.79
SDC1-205ENST00000447124 PSME4Q14997 1843 aa26.25■■□□□ 1.79
SDC1-205ENST00000447124 KCNJ4P48050 445 aa26.24■■□□□ 1.79
SDC1-205ENST00000447124 ANGEL2Q5VTE6 544 aaKnown RBP26.24■■□□□ 1.79
SDC1-205ENST00000447124 LDHAL6AQ6ZMR3 332 aa26.24■■□□□ 1.79
SDC1-205ENST00000447124 C15orf52Q6ZUT6 534 aaKnown RBP26.24■■□□□ 1.79
SDC1-205ENST00000447124 TNS4Q8IZW8 715 aa26.24■■□□□ 1.79
SDC1-205ENST00000447124 FBXW7Q969H0 707 aa26.24■■□□□ 1.79
SDC1-205ENST00000447124 PTPRCP08575 1304 aa26.23■■□□□ 1.79
SDC1-205ENST00000447124 CTCFP49711 727 aaPredicted RBP26.23■■□□□ 1.79
SDC1-205ENST00000447124 MAP2K1Q02750 393 aaPredicted RBP26.23■■□□□ 1.79
SDC1-205ENST00000447124 AIDAQ96BJ3 306 aa26.23■■□□□ 1.79
SDC1-205ENST00000447124 GTF2IP78347 998 aa26.22■■□□□ 1.79
SDC1-205ENST00000447124 PUS3Q9BZE2 481 aaKnown RBP26.22■■□□□ 1.79
SDC1-205ENST00000447124 SCAF8Q9UPN6 1271 aaKnown RBP26.22■■□□□ 1.79
SDC1-205ENST00000447124 PLIN1O60240 522 aa26.21■■□□□ 1.79
SDC1-205ENST00000447124 NBPF9Q3BBW0 867 aa26.21■■□□□ 1.79
SDC1-205ENST00000447124 ALDH1L2Q3SY69 923 aa26.21■■□□□ 1.79
SDC1-205ENST00000447124 TAF7LQ5H9L4 462 aa26.21■■□□□ 1.79
SDC1-205ENST00000447124 SULF1Q8IWU6 871 aa26.21■■□□□ 1.79
SDC1-205ENST00000447124 GBA2Q9HCG7 927 aaPredicted RBP26.21■■□□□ 1.79
SDC1-205ENST00000447124 PRDM10Q9NQV6 1147 aa26.21■■□□□ 1.79
SDC1-205ENST00000447124 MAP2K2P36507 400 aa26.2■■□□□ 1.78
SDC1-205ENST00000447124 LBX1P52954 281 aa26.2■■□□□ 1.78
SDC1-205ENST00000447124 HUNKP57058 714 aa26.2■■□□□ 1.78
SDC1-205ENST00000447124 ANKRD44Q8N8A2 993 aa26.2■■□□□ 1.78
SDC1-205ENST00000447124 USP44Q9H0E7 712 aa26.2■■□□□ 1.78
SDC1-205ENST00000447124 BICC1Q9H694 974 aaKnown RBP26.2■■□□□ 1.78
SDC1-205ENST00000447124 CNNM1Q9NRU3 951 aa26.2■■□□□ 1.78
SDC1-205ENST00000447124 HSPA8P11142 646 aaKnown RBP26.19■■□□□ 1.78
SDC1-205ENST00000447124 RABL6Q3YEC7 729 aaPredicted RBP26.19■■□□□ 1.78
SDC1-205ENST00000447124 CDCA5Q96FF9 252 aa26.19■■□□□ 1.78
SDC1-205ENST00000447124 ZIC5Q96T25 663 aa26.19■■□□□ 1.78
SDC1-205ENST00000447124 MYO3BQ8WXR4 1341 aa26.18■■□□□ 1.78
SDC1-205ENST00000447124 C2orf69Q8N8R5 385 aa26.18■■□□□ 1.78
SDC1-205ENST00000447124 RIPOR2Q9Y4F9 1068 aa26.18■■□□□ 1.78
SDC1-205ENST00000447124 ZNF646O15015 1829 aaPredicted RBP26.18■■□□□ 1.78
SDC1-205ENST00000447124 WNT10BO00744 389 aa26.17■■□□□ 1.78
SDC1-205ENST00000447124 IL1R1P14778 569 aa26.17■■□□□ 1.78
SDC1-205ENST00000447124 KIAA0825Q8IV33 1275 aa26.17■■□□□ 1.78
SDC1-205ENST00000447124 OGFOD1Q8N543 542 aa26.17■■□□□ 1.78
SDC1-205ENST00000447124 CERS5Q8N5B7 392 aa26.17■■□□□ 1.78
SDC1-205ENST00000447124 SMC4Q9NTJ3 1288 aa26.16■■□□□ 1.78
SDC1-205ENST00000447124 PITPNM2Q9BZ72 1349 aa26.15■■□□□ 1.78
SDC1-205ENST00000447124 PRAMEF18Q5VWM3 479 aa26.15■■□□□ 1.78
SDC1-205ENST00000447124 ZBED3Q96IU2 234 aaPredicted RBP26.15■■□□□ 1.78
SDC1-205ENST00000447124 FAM155AB1AL88 458 aaPredicted RBP26.14■■□□□ 1.78
SDC1-205ENST00000447124 RGMBQ6NW40 437 aa26.14■■□□□ 1.78
SDC1-205ENST00000447124 SASH1O94885 1247 aa26.13■■□□□ 1.77
SDC1-205ENST00000447124 MMP14P50281 582 aa26.13■■□□□ 1.77
SDC1-205ENST00000447124 UBE4AQ14139 1066 aa26.13■■□□□ 1.77
SDC1-205ENST00000447124 LRRC24Q50LG9 513 aa26.13■■□□□ 1.77
SDC1-205ENST00000447124 ZNF804AQ7Z570 1209 aa26.13■■□□□ 1.77
SDC1-205ENST00000447124 NOB1Q9ULX3 412 aaKnown RBP26.13■■□□□ 1.77
SDC1-205ENST00000447124 JAG2Q9Y219 1238 aa26.13■■□□□ 1.77
SDC1-205ENST00000447124 THSD7BQ9C0I4 1608 aa26.13■■□□□ 1.77
SDC1-205ENST00000447124 KLHDC4Q8TBB5 520 aa26.12■■□□□ 1.77
SDC1-205ENST00000447124 FAM84BQ96KN1 310 aaPredicted RBP26.12■■□□□ 1.77
SDC1-205ENST00000447124 A0A1B0GUL6 1792 aa26.12■■□□□ 1.77
SDC1-205ENST00000447124 CT47B1P0C2W7 299 aaPredicted RBP26.11■■□□□ 1.77
SDC1-205ENST00000447124 GYG1P46976 350 aa26.11■■□□□ 1.77
SDC1-205ENST00000447124 TSKSQ9UJT2 592 aa26.11■■□□□ 1.77
SDC1-205ENST00000447124 HDAC9Q9UKV0 1011 aa26.11■■□□□ 1.77
Retrieved 100 of 20,778 RNA–protein pairs in 24.1 ms