RNA–Protein interactions for RNA: ENST00000443046.5

HMGN1-208, Transcript of high mobility group nucleosome binding domain 1, humanhuman

TSL 3

Gene HMGN1, Length 823 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGN1-208ENST00000443046 JARID2Q92833 1246 aaPredicted RBP18.66■□□□□ 0.58
HMGN1-208ENST00000443046 CCDC85AQ96PX6 553 aaPredicted RBP18.66■□□□□ 0.58
HMGN1-208ENST00000443046 MINPP1Q9UNW1 487 aa18.66■□□□□ 0.58
HMGN1-208ENST00000443046 STRIP1Q5VSL9 837 aa18.65■□□□□ 0.58
HMGN1-208ENST00000443046 METTL22Q9BUU2 404 aaPredicted RBP18.65■□□□□ 0.58
HMGN1-208ENST00000443046 MXD3Q9BW11 206 aa18.65■□□□□ 0.58
HMGN1-208ENST00000443046 R3HDMLQ9H3Y0 253 aa18.65■□□□□ 0.58
HMGN1-208ENST00000443046 BSDC1Q9NW68 430 aaPredicted RBP18.65■□□□□ 0.58
HMGN1-208ENST00000443046 PTPN12Q05209 780 aaKnown RBP18.64■□□□□ 0.57
HMGN1-208ENST00000443046 SREBF2Q12772 1141 aa18.64■□□□□ 0.57
HMGN1-208ENST00000443046 LDLRAD1Q5T700 205 aa18.64■□□□□ 0.57
HMGN1-208ENST00000443046 TTLL11Q8NHH1 800 aa18.64■□□□□ 0.57
HMGN1-208ENST00000443046 ZBED3Q96IU2 234 aaPredicted RBP18.64■□□□□ 0.57
HMGN1-208ENST00000443046 ADAMTS8Q9UP79 889 aa18.64■□□□□ 0.57
HMGN1-208ENST00000443046 MYO3BQ8WXR4 1341 aa18.64■□□□□ 0.57
HMGN1-208ENST00000443046 MYH3P11055 1940 aa18.63■□□□□ 0.57
HMGN1-208ENST00000443046 FKTNO75072 461 aa18.63■□□□□ 0.57
HMGN1-208ENST00000443046 OGFOD1Q8N543 542 aa18.63■□□□□ 0.57
HMGN1-208ENST00000443046 CDC5LQ99459 802 aaKnown RBP18.63■□□□□ 0.57
HMGN1-208ENST00000443046 MYBBP1AQ9BQG0 1328 aaKnown RBP18.63■□□□□ 0.57
HMGN1-208ENST00000443046 NF2P35240 595 aa18.62■□□□□ 0.57
HMGN1-208ENST00000443046 CCT4P50991 539 aaKnown RBP18.62■□□□□ 0.57
HMGN1-208ENST00000443046 CTSWP56202 376 aa18.62■□□□□ 0.57
HMGN1-208ENST00000443046 TTLL12Q14166 644 aaPredicted RBP18.62■□□□□ 0.57
HMGN1-208ENST00000443046 TXNRD3Q86VQ6 643 aa18.62■□□□□ 0.57
HMGN1-208ENST00000443046 COA1Q9GZY4 146 aa18.62■□□□□ 0.57
HMGN1-208ENST00000443046 IFT57Q9NWB7 429 aa18.62■□□□□ 0.57
HMGN1-208ENST00000443046 LAMB1P07942 1786 aa18.61■□□□□ 0.57
HMGN1-208ENST00000443046 IGKV5-2P06315 115 aa18.61■□□□□ 0.57
HMGN1-208ENST00000443046 MKRN3Q13064 507 aaKnown RBP18.61■□□□□ 0.57
HMGN1-208ENST00000443046 SPRYD7Q5W111 196 aa18.61■□□□□ 0.57
HMGN1-208ENST00000443046 GREM2Q9H772 168 aa18.61■□□□□ 0.57
HMGN1-208ENST00000443046 SPEF2Q9C093 1822 aa18.6■□□□□ 0.57
HMGN1-208ENST00000443046 ARMC9Q7Z3E5 817 aa18.6■□□□□ 0.57
HMGN1-208ENST00000443046 C8orf58Q8NAV2 365 aa18.6■□□□□ 0.57
HMGN1-208ENST00000443046 ELL2O00472 640 aaPredicted RBP18.59■□□□□ 0.57
HMGN1-208ENST00000443046 SASH1O94885 1247 aa18.59■□□□□ 0.57
HMGN1-208ENST00000443046 DDX58O95786 925 aaKnown RBP18.59■□□□□ 0.57
HMGN1-208ENST00000443046 ALDH1A1P00352 501 aa18.59■□□□□ 0.57
HMGN1-208ENST00000443046 GNAI1P63096 354 aa18.59■□□□□ 0.57
HMGN1-208ENST00000443046 WDR43Q15061 677 aaKnown RBP eCLIP18.59■□□□□ 0.57
HMGN1-208ENST00000443046 MAP3K11Q16584 847 aa18.59■□□□□ 0.57
HMGN1-208ENST00000443046 APOBEC3FQ8IUX4 373 aaKnown RBP18.59■□□□□ 0.57
HMGN1-208ENST00000443046 MAP3K2Q9Y2U5 619 aa18.59■□□□□ 0.57
HMGN1-208ENST00000443046 LEMD3Q9Y2U8 911 aa18.59■□□□□ 0.57
HMGN1-208ENST00000443046 TTLL5Q6EMB2 1281 aa18.58■□□□□ 0.56
HMGN1-208ENST00000443046 KSR2Q6VAB6 950 aa18.58■□□□□ 0.56
HMGN1-208ENST00000443046 GCC1Q96CN9 775 aa18.58■□□□□ 0.56
HMGN1-208ENST00000443046 COL1A1P02452 1464 aaPredicted RBP18.58■□□□□ 0.56
HMGN1-208ENST00000443046 INHBEP58166 350 aa18.57■□□□□ 0.56
HMGN1-208ENST00000443046 IFNL1Q8IU54 200 aa18.57■□□□□ 0.56
HMGN1-208ENST00000443046 KIAA0100Q14667 2235 aaKnown RBP18.57■□□□□ 0.56
HMGN1-208ENST00000443046 RBBP6Q7Z6E9 1792 aaKnown RBP18.56■□□□□ 0.56
HMGN1-208ENST00000443046 H7C1W4 665 aa18.56■□□□□ 0.56
HMGN1-208ENST00000443046 PRKG1Q13976 671 aa18.56■□□□□ 0.56
HMGN1-208ENST00000443046 CCDC30Q5VVM6 783 aa18.56■□□□□ 0.56
HMGN1-208ENST00000443046 ANGEL1Q9UNK9 670 aaKnown RBP18.56■□□□□ 0.56
HMGN1-208ENST00000443046 ZNF804BA4D1E1 1349 aa18.55■□□□□ 0.56
HMGN1-208ENST00000443046 PI4KAP2A4QPH2 592 aa18.55■□□□□ 0.56
HMGN1-208ENST00000443046 MANSC4A6NHS7 340 aaPredicted RBP18.55■□□□□ 0.56
HMGN1-208ENST00000443046 UNCXA6NJT0 531 aa18.55■□□□□ 0.56
HMGN1-208ENST00000443046 ZBTB48P10074 688 aaPredicted RBP18.55■□□□□ 0.56
HMGN1-208ENST00000443046 KLRK1P26718 216 aa18.55■□□□□ 0.56
HMGN1-208ENST00000443046 INTS3Q68E01 1043 aaKnown RBP18.55■□□□□ 0.56
HMGN1-208ENST00000443046 OTOP1Q7RTM1 612 aa18.55■□□□□ 0.56
HMGN1-208ENST00000443046 KIAA0825Q8IV33 1275 aa18.55■□□□□ 0.56
HMGN1-208ENST00000443046 PI4KAP1Q8N8J0 262 aa18.55■□□□□ 0.56
HMGN1-208ENST00000443046 MTMR14Q8NCE2 650 aa18.55■□□□□ 0.56
HMGN1-208ENST00000443046 FBXW7Q969H0 707 aa18.55■□□□□ 0.56
HMGN1-208ENST00000443046 CHMP4AQ9BY43 222 aa18.55■□□□□ 0.56
HMGN1-208ENST00000443046 DEFB129Q9H1M3 183 aa18.55■□□□□ 0.56
HMGN1-208ENST00000443046 FZD1Q9UP38 647 aa18.55■□□□□ 0.56
HMGN1-208ENST00000443046 SSC5DA1L4H1 1573 aa18.55■□□□□ 0.56
HMGN1-208ENST00000443046 IRS2Q9Y4H2 1338 aa18.54■□□□□ 0.56
HMGN1-208ENST00000443046 NEURL1BA8MQ27 555 aa18.54■□□□□ 0.56
HMGN1-208ENST00000443046 IGF2BP3O00425 579 aaKnown RBP eCLIP18.54■□□□□ 0.56
HMGN1-208ENST00000443046 CALD1Q05682 793 aaKnown RBP18.54■□□□□ 0.56
HMGN1-208ENST00000443046 HABP4Q5JVS0 413 aaKnown RBP18.54■□□□□ 0.56
HMGN1-208ENST00000443046 PLA2G12BQ9BX93 195 aa18.54■□□□□ 0.56
HMGN1-208ENST00000443046 ECM29Q5VYK3 1845 aa18.53■□□□□ 0.56
HMGN1-208ENST00000443046 POTEFA5A3E0 1075 aa18.53■□□□□ 0.56
HMGN1-208ENST00000443046 GTF2IP78347 998 aa18.53■□□□□ 0.56
HMGN1-208ENST00000443046 CWF19L2Q2TBE0 894 aaKnown RBP18.53■□□□□ 0.56
HMGN1-208ENST00000443046 TSPYL6Q8N831 410 aa18.53■□□□□ 0.56
HMGN1-208ENST00000443046 SLC10A4Q96EP9 437 aa18.53■□□□□ 0.56
HMGN1-208ENST00000443046 WNK4Q96J92 1243 aa18.53■□□□□ 0.56
HMGN1-208ENST00000443046 ANKRD2Q9GZV1 360 aa18.53■□□□□ 0.56
HMGN1-208ENST00000443046 TRIM17Q9Y577 477 aa18.53■□□□□ 0.56
HMGN1-208ENST00000443046 APAF1O14727 1248 aa18.52■□□□□ 0.56
HMGN1-208ENST00000443046 CSF1RP07333 972 aa18.52■□□□□ 0.56
HMGN1-208ENST00000443046 IGHMBP2P38935 993 aaKnown RBP18.52■□□□□ 0.56
HMGN1-208ENST00000443046 CERS5Q8N5B7 392 aa18.52■□□□□ 0.56
HMGN1-208ENST00000443046 CLMNQ96JQ2 1002 aa18.52■□□□□ 0.56
HMGN1-208ENST00000443046 CD209Q9NNX6 404 aa18.52■□□□□ 0.56
HMGN1-208ENST00000443046 PPP2R3BQ9Y5P8 575 aa18.52■□□□□ 0.56
HMGN1-208ENST00000443046 CASP7P55210 303 aa18.51■□□□□ 0.55
HMGN1-208ENST00000443046 NEXNQ0ZGT2 675 aa18.51■□□□□ 0.55
HMGN1-208ENST00000443046 C15orf52Q6ZUT6 534 aaKnown RBP18.51■□□□□ 0.55
HMGN1-208ENST00000443046 PTPN22Q9Y2R2 807 aa18.51■□□□□ 0.55
HMGN1-208ENST00000443046 SZT2Q5T011 3432 aa18.51■□□□□ 0.55
Retrieved 100 of 20,778 RNA–protein pairs in 21.4 ms