RNA–Protein interactions for RNA: ENST00000439316.6

CLCNKA-203, Transcript of chloride voltage-gated channel Ka, humanhuman

TSL 2 BASIC

Gene CLCNKA, Length 1,997 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLCNKA-203ENST00000439316 CCDC129Q6ZRS4 1044 aa19.35■□□□□ 0.69
CLCNKA-203ENST00000439316 Q6ZUG5 572 aa19.35■□□□□ 0.69
CLCNKA-203ENST00000439316 BRF1Q92994 677 aa19.35■□□□□ 0.69
CLCNKA-203ENST00000439316 PYCARDQ9ULZ3 195 aa19.35■□□□□ 0.69
CLCNKA-203ENST00000439316 SH3TC1Q8TE82 1336 aa19.34■□□□□ 0.69
CLCNKA-203ENST00000439316 PALLDQ8WX93 1383 aa19.34■□□□□ 0.69
CLCNKA-203ENST00000439316 DNAJC10Q8IXB1 793 aa19.34■□□□□ 0.69
CLCNKA-203ENST00000439316 PGBD1Q96JS3 809 aa19.34■□□□□ 0.69
CLCNKA-203ENST00000439316 DNAJC2Q99543 621 aaKnown RBP19.34■□□□□ 0.69
CLCNKA-203ENST00000439316 NDUFB9Q9Y6M9 179 aa19.34■□□□□ 0.69
CLCNKA-203ENST00000439316 MYH15Q9Y2K3 1946 aa19.34■□□□□ 0.69
CLCNKA-203ENST00000439316 LAMA4Q16363 1823 aa19.34■□□□□ 0.69
CLCNKA-203ENST00000439316 LUZP1Q86V48 1076 aa19.33■□□□□ 0.69
CLCNKA-203ENST00000439316 CKAP2LQ8IYA6 745 aa19.33■□□□□ 0.69
CLCNKA-203ENST00000439316 SEC62Q99442 399 aaKnown RBP19.33■□□□□ 0.69
CLCNKA-203ENST00000439316 CBX8Q9HC52 389 aa19.33■□□□□ 0.69
CLCNKA-203ENST00000439316 CHGBP05060 677 aa19.33■□□□□ 0.68
CLCNKA-203ENST00000439316 ANO6Q4KMQ2 910 aa19.33■□□□□ 0.68
CLCNKA-203ENST00000439316 SPC24Q8NBT2 197 aa19.33■□□□□ 0.68
CLCNKA-203ENST00000439316 SMARCC2Q8TAQ2 1214 aa19.33■□□□□ 0.68
CLCNKA-203ENST00000439316 SLC4A9Q96Q91 983 aa19.33■□□□□ 0.68
CLCNKA-203ENST00000439316 A0A087WZG4 1122 aa19.32■□□□□ 0.68
CLCNKA-203ENST00000439316 KBTBD3Q8NAB2 608 aa19.32■□□□□ 0.68
CLCNKA-203ENST00000439316 GJD4Q96KN9 370 aaPredicted RBP19.32■□□□□ 0.68
CLCNKA-203ENST00000439316 LLPHQ9BRT6 129 aaKnown RBP19.32■□□□□ 0.68
CLCNKA-203ENST00000439316 TEX13AQ9BXU3 409 aaPredicted RBP19.32■□□□□ 0.68
CLCNKA-203ENST00000439316 ZSCAN16Q9H4T2 348 aaPredicted RBP19.32■□□□□ 0.68
CLCNKA-203ENST00000439316 HSP90B1P14625 803 aaKnown RBP19.32■□□□□ 0.68
CLCNKA-203ENST00000439316 STOX1Q6ZVD7 989 aa19.32■□□□□ 0.68
CLCNKA-203ENST00000439316 DDX46Q7L014 1031 aaKnown RBP19.32■□□□□ 0.68
CLCNKA-203ENST00000439316 PLBD2Q8NHP8 589 aa19.32■□□□□ 0.68
CLCNKA-203ENST00000439316 TDRD7Q8NHU6 1098 aaKnown RBP19.32■□□□□ 0.68
CLCNKA-203ENST00000439316 PFKFB2O60825 505 aa19.31■□□□□ 0.68
CLCNKA-203ENST00000439316 NR1I2O75469 434 aa19.31■□□□□ 0.68
CLCNKA-203ENST00000439316 SCRN1Q12765 414 aa19.31■□□□□ 0.68
CLCNKA-203ENST00000439316 BICD2Q8TD16 824 aa19.31■□□□□ 0.68
CLCNKA-203ENST00000439316 ATP5J2-PTCD1G3V325 749 aa19.3■□□□□ 0.68
CLCNKA-203ENST00000439316 KCNQ2O43526 872 aa19.3■□□□□ 0.68
CLCNKA-203ENST00000439316 STARD3NLO95772 234 aa19.3■□□□□ 0.68
CLCNKA-203ENST00000439316 HMGB1P09429 215 aaKnown RBP19.3■□□□□ 0.68
CLCNKA-203ENST00000439316 TICAM2Q86XR7 235 aa19.3■□□□□ 0.68
CLCNKA-203ENST00000439316 TJP1Q07157 1748 aa19.3■□□□□ 0.68
CLCNKA-203ENST00000439316 THSD7AQ9UPZ6 1657 aa19.3■□□□□ 0.68
CLCNKA-203ENST00000439316 NUP188Q5SRE5 1749 aa19.3■□□□□ 0.68
CLCNKA-203ENST00000439316 H3BQV1 296 aa19.3■□□□□ 0.68
CLCNKA-203ENST00000439316 IFFO2Q5TF58 517 aa19.3■□□□□ 0.68
CLCNKA-203ENST00000439316 TTLL7Q6ZT98 887 aa19.3■□□□□ 0.68
CLCNKA-203ENST00000439316 PLA2G4DQ86XP0 818 aa19.3■□□□□ 0.68
CLCNKA-203ENST00000439316 PTGS1P23219 599 aa19.29■□□□□ 0.68
CLCNKA-203ENST00000439316 ARHGAP30Q7Z6I6 1101 aaPredicted RBP19.29■□□□□ 0.68
CLCNKA-203ENST00000439316 HELLSQ9NRZ9 838 aa19.29■□□□□ 0.68
CLCNKA-203ENST00000439316 CFAP45Q9UL16 551 aa19.29■□□□□ 0.68
CLCNKA-203ENST00000439316 FOXO4P98177 505 aa19.28■□□□□ 0.68
CLCNKA-203ENST00000439316 NAA16Q6N069 864 aaPredicted RBP19.28■□□□□ 0.68
CLCNKA-203ENST00000439316 LMBR1LQ6UX01 489 aa19.28■□□□□ 0.68
CLCNKA-203ENST00000439316 DHX32Q7L7V1 743 aaKnown RBP19.28■□□□□ 0.68
CLCNKA-203ENST00000439316 NSUN7Q8NE18 718 aaKnown RBP19.28■□□□□ 0.68
CLCNKA-203ENST00000439316 DSCC1Q9BVC3 393 aa19.28■□□□□ 0.68
CLCNKA-203ENST00000439316 GPR108Q9NPR9 543 aa19.28■□□□□ 0.68
CLCNKA-203ENST00000439316 TRPC5Q9UL62 973 aaPredicted RBP19.28■□□□□ 0.68
CLCNKA-203ENST00000439316 H7C1W4 665 aa19.28■□□□□ 0.68
CLCNKA-203ENST00000439316 ADD1P35611 737 aaKnown RBP19.28■□□□□ 0.68
CLCNKA-203ENST00000439316 ZNF75DP51815 510 aa19.28■□□□□ 0.68
CLCNKA-203ENST00000439316 DDX11Q96FC9 970 aa19.28■□□□□ 0.68
CLCNKA-203ENST00000439316 AGXT2Q9BYV1 514 aa19.28■□□□□ 0.68
CLCNKA-203ENST00000439316 ZNF330Q9Y3S2 320 aaPredicted RBP19.28■□□□□ 0.68
CLCNKA-203ENST00000439316 ATRNO75882 1429 aa19.28■□□□□ 0.68
CLCNKA-203ENST00000439316 SPEF2Q9C093 1822 aa19.27■□□□□ 0.68
CLCNKA-203ENST00000439316 CAVIN2O95810 425 aa19.27■□□□□ 0.68
CLCNKA-203ENST00000439316 ATG9AQ7Z3C6 839 aa19.27■□□□□ 0.68
CLCNKA-203ENST00000439316 ZNF710Q8N1W2 664 aa19.27■□□□□ 0.68
CLCNKA-203ENST00000439316 LRRC2Q9BYS8 371 aa19.27■□□□□ 0.68
CLCNKA-203ENST00000439316 ZMYND15Q9H091 742 aa19.27■□□□□ 0.68
CLCNKA-203ENST00000439316 PAG1Q9NWQ8 432 aa19.27■□□□□ 0.68
CLCNKA-203ENST00000439316 CYP19A1P11511 503 aaPredicted RBP19.26■□□□□ 0.67
CLCNKA-203ENST00000439316 ZMYM1Q5SVZ6 1142 aa19.26■□□□□ 0.67
CLCNKA-203ENST00000439316 KIF3AQ9Y496 699 aa19.26■□□□□ 0.67
CLCNKA-203ENST00000439316 CTDNEP1O95476 244 aa19.26■□□□□ 0.67
CLCNKA-203ENST00000439316 ZNF165P49910 485 aa19.26■□□□□ 0.67
CLCNKA-203ENST00000439316 EXOSC10Q01780 885 aaKnown RBP19.26■□□□□ 0.67
CLCNKA-203ENST00000439316 DNAJC25Q9H1X3 360 aa19.26■□□□□ 0.67
CLCNKA-203ENST00000439316 SALL1Q9NSC2 1324 aa19.25■□□□□ 0.67
CLCNKA-203ENST00000439316 GOLIM4O00461 696 aa19.25■□□□□ 0.67
CLCNKA-203ENST00000439316 FGD1P98174 961 aa19.25■□□□□ 0.67
CLCNKA-203ENST00000439316 FAM182BQ5T319 152 aa19.25■□□□□ 0.67
CLCNKA-203ENST00000439316 ZBTB3Q9H5J0 574 aa19.25■□□□□ 0.67
CLCNKA-203ENST00000439316 RCOR1Q9UKL0 485 aa19.25■□□□□ 0.67
CLCNKA-203ENST00000439316 PTPDC1A2A3K4 754 aa19.24■□□□□ 0.67
CLCNKA-203ENST00000439316 CCDC186Q7Z3E2 898 aa19.24■□□□□ 0.67
CLCNKA-203ENST00000439316 TSC1Q92574 1164 aa19.24■□□□□ 0.67
CLCNKA-203ENST00000439316 QTRT2Q9H974 415 aaKnown RBP19.24■□□□□ 0.67
CLCNKA-203ENST00000439316 EP400Q96L91 3159 aa19.24■□□□□ 0.67
CLCNKA-203ENST00000439316 LOC102724428A0A0B4J2F2 783 aa19.24■□□□□ 0.67
CLCNKA-203ENST00000439316 SIK1P57059 783 aa19.24■□□□□ 0.67
CLCNKA-203ENST00000439316 TRIM5Q9C035 493 aa19.24■□□□□ 0.67
CLCNKA-203ENST00000439316 ONECUT3O60422 494 aaPredicted RBP19.23■□□□□ 0.67
CLCNKA-203ENST00000439316 CDC25BP30305 580 aa19.23■□□□□ 0.67
CLCNKA-203ENST00000439316 ATP6V1AP38606 617 aa19.23■□□□□ 0.67
CLCNKA-203ENST00000439316 IL15P40933 162 aaPredicted RBP19.23■□□□□ 0.67
CLCNKA-203ENST00000439316 APOBRQ0VD83 1088 aa19.23■□□□□ 0.67
Retrieved 100 of 20,778 RNA–protein pairs in 19.3 ms