RNA–Protein interactions for RNA: ENST00000424265.5

USP54-205, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 2

Gene USP54, Length 5,201 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-205ENST00000424265 ANKRD18AQ8IVF6 992 aa11.41□□□□□ -0.58
USP54-205ENST00000424265 FSD1Q9BTV5 496 aa11.41□□□□□ -0.58
USP54-205ENST00000424265 IRS4O14654 1257 aaPredicted RBP11.41□□□□□ -0.58
USP54-205ENST00000424265 ST18O60284 1047 aa11.41□□□□□ -0.58
USP54-205ENST00000424265 PDE8AO60658 829 aa11.41□□□□□ -0.58
USP54-205ENST00000424265 IPO7O95373 1038 aaKnown RBP11.41□□□□□ -0.58
USP54-205ENST00000424265 CRKLP46109 303 aaKnown RBP11.41□□□□□ -0.58
USP54-205ENST00000424265 NBPF10Q6P3W6 841 aaKnown RBP11.41□□□□□ -0.58
USP54-205ENST00000424265 SIL1Q9H173 461 aa11.41□□□□□ -0.58
USP54-205ENST00000424265 USP16Q9Y5T5 823 aa11.41□□□□□ -0.58
USP54-205ENST00000424265 FAM208AQ9UK61 1670 aaKnown RBP11.41□□□□□ -0.58
USP54-205ENST00000424265 KCNQ3O43525 872 aa11.41□□□□□ -0.58
USP54-205ENST00000424265 PRPF40AO75400 957 aaKnown RBP11.41□□□□□ -0.58
USP54-205ENST00000424265 SETSIPP0DME0 302 aa11.41□□□□□ -0.58
USP54-205ENST00000424265 NLGN1Q8N2Q7 840 aa11.41□□□□□ -0.58
USP54-205ENST00000424265 KIF18AQ8NI77 898 aa11.41□□□□□ -0.58
USP54-205ENST00000424265 NBPF3Q9H094 633 aa11.41□□□□□ -0.58
USP54-205ENST00000424265 CCP110O43303 1012 aa11.41□□□□□ -0.58
USP54-205ENST00000424265 MCTP2Q6DN12 878 aa11.41□□□□□ -0.58
USP54-205ENST00000424265 LRSAM1Q6UWE0 723 aa11.41□□□□□ -0.58
USP54-205ENST00000424265 CLEC4GQ6UXB4 293 aa11.41□□□□□ -0.58
USP54-205ENST00000424265 ANKRD7Q92527 254 aa11.41□□□□□ -0.58
USP54-205ENST00000424265 CTNNA3Q9UI47 895 aa11.41□□□□□ -0.58
USP54-205ENST00000424265 SEC24BO95487 1268 aa11.4□□□□□ -0.58
USP54-205ENST00000424265 GCKRQ14397 625 aa11.4□□□□□ -0.58
USP54-205ENST00000424265 LDHAL6AQ6ZMR3 332 aa11.4□□□□□ -0.58
USP54-205ENST00000424265 G2E3Q7L622 706 aa11.4□□□□□ -0.58
USP54-205ENST00000424265 CNBD1Q8NA66 436 aa11.4□□□□□ -0.58
USP54-205ENST00000424265 ANKRD2Q9GZV1 360 aa11.4□□□□□ -0.58
USP54-205ENST00000424265 ATG3Q9NT62 314 aa11.4□□□□□ -0.58
USP54-205ENST00000424265 ZBTB7BO15156 539 aaPredicted RBP11.4□□□□□ -0.58
USP54-205ENST00000424265 MEGF6O75095 1541 aa11.4□□□□□ -0.58
USP54-205ENST00000424265 UQCRFS1P1P0C7P4 283 aa11.4□□□□□ -0.58
USP54-205ENST00000424265 ZSCAN26Q16670 478 aa11.4□□□□□ -0.58
USP54-205ENST00000424265 RC3H1Q5TC82 1133 aaKnown RBP11.4□□□□□ -0.58
USP54-205ENST00000424265 OTUD6BQ8N6M0 293 aa11.4□□□□□ -0.58
USP54-205ENST00000424265 CCDC97Q96F63 343 aaPredicted RBP11.4□□□□□ -0.58
USP54-205ENST00000424265 MX1P20591 662 aa11.4□□□□□ -0.59
USP54-205ENST00000424265 RAB3GAP1Q15042 981 aa11.4□□□□□ -0.59
USP54-205ENST00000424265 DNAJC21Q5F1R6 531 aaKnown RBP11.4□□□□□ -0.59
USP54-205ENST00000424265 NEK11Q8NG66 645 aa11.4□□□□□ -0.59
USP54-205ENST00000424265 MBD3O95983 291 aa11.39□□□□□ -0.59
USP54-205ENST00000424265 WASHC4Q2M389 1173 aa11.39□□□□□ -0.59
USP54-205ENST00000424265 GIGYF2Q6Y7W6 1299 aaKnown RBP11.39□□□□□ -0.59
USP54-205ENST00000424265 SGSM3Q96HU1 749 aa11.39□□□□□ -0.59
USP54-205ENST00000424265 IBTKQ9P2D0 1353 aaPredicted RBP11.39□□□□□ -0.59
USP54-205ENST00000424265 SMTNL1A8MU46 457 aa11.39□□□□□ -0.59
USP54-205ENST00000424265 RPS6KA4O75676 772 aa11.39□□□□□ -0.59
USP54-205ENST00000424265 PCCAP05165 728 aaPredicted RBP11.39□□□□□ -0.59
USP54-205ENST00000424265 PRDM16Q9HAZ2 1276 aa11.39□□□□□ -0.59
USP54-205ENST00000424265 RRP15Q9Y3B9 282 aaKnown RBP11.39□□□□□ -0.59
USP54-205ENST00000424265 PAXBP1Q9Y5B6 917 aa11.39□□□□□ -0.59
USP54-205ENST00000424265 STRCQ7RTU9 1775 aa11.39□□□□□ -0.59
USP54-205ENST00000424265 SYCP1Q15431 976 aa11.39□□□□□ -0.59
USP54-205ENST00000424265 FMNL3Q8IVF7 1028 aa11.39□□□□□ -0.59
USP54-205ENST00000424265 RBM17Q96I25 401 aaKnown RBP11.39□□□□□ -0.59
USP54-205ENST00000424265 TRIM37O94972 964 aa11.39□□□□□ -0.59
USP54-205ENST00000424265 TTF1Q15361 905 aaPredicted RBP11.39□□□□□ -0.59
USP54-205ENST00000424265 CEP85Q6P2H3 762 aa11.39□□□□□ -0.59
USP54-205ENST00000424265 LMBR1LQ6UX01 489 aa11.39□□□□□ -0.59
USP54-205ENST00000424265 SLF2Q8IX21 1173 aa11.39□□□□□ -0.59
USP54-205ENST00000424265 TTC12Q9H892 705 aaPredicted RBP11.39□□□□□ -0.59
USP54-205ENST00000424265 NEURL1BA8MQ27 555 aa11.38□□□□□ -0.59
USP54-205ENST00000424265 EXOC6BQ9Y2D4 811 aa11.38□□□□□ -0.59
USP54-205ENST00000424265 PDLIM2Q96JY6 352 aa11.38□□□□□ -0.59
USP54-205ENST00000424265 CWC22Q9HCG8 908 aaKnown RBP11.38□□□□□ -0.59
USP54-205ENST00000424265 IRAK4Q9NWZ3 460 aa11.38□□□□□ -0.59
USP54-205ENST00000424265 SSFA2P28290 1259 aa11.38□□□□□ -0.59
USP54-205ENST00000424265 CYP2C19P33261 490 aa11.38□□□□□ -0.59
USP54-205ENST00000424265 GBP6Q6ZN66 633 aa11.38□□□□□ -0.59
USP54-205ENST00000424265 C17orf53Q8N3J3 647 aaPredicted RBP11.38□□□□□ -0.59
USP54-205ENST00000424265 DCTPP1Q9H773 170 aa11.38□□□□□ -0.59
USP54-205ENST00000424265 RGPD8O14715 1765 aaPredicted RBP11.38□□□□□ -0.59
USP54-205ENST00000424265 NF2P35240 595 aa11.38□□□□□ -0.59
USP54-205ENST00000424265 GTF3C6Q969F1 213 aa11.38□□□□□ -0.59
USP54-205ENST00000424265 MARCH10Q8NA82 808 aaPredicted RBP11.37□□□□□ -0.59
USP54-205ENST00000424265 BSDC1Q9NW68 430 aaPredicted RBP11.37□□□□□ -0.59
USP54-205ENST00000424265 EIF2AK3Q9NZJ5 1116 aaKnown RBP11.37□□□□□ -0.59
USP54-205ENST00000424265 RGL2O15211 777 aa11.37□□□□□ -0.59
USP54-205ENST00000424265 LMAN1P49257 510 aa11.37□□□□□ -0.59
USP54-205ENST00000424265 CWF19L2Q2TBE0 894 aaKnown RBP11.37□□□□□ -0.59
USP54-205ENST00000424265 FAM184AQ8NB25 1140 aa11.37□□□□□ -0.59
USP54-205ENST00000424265 ECHDC1Q9NTX5 307 aa11.37□□□□□ -0.59
USP54-205ENST00000424265 LTBP4Q8N2S1 1624 aa11.37□□□□□ -0.59
USP54-205ENST00000424265 BAG4O95429 457 aaKnown RBP11.37□□□□□ -0.59
USP54-205ENST00000424265 BEND3Q5T5X7 828 aa11.37□□□□□ -0.59
USP54-205ENST00000424265 CCDC125Q86Z20 511 aa11.37□□□□□ -0.59
USP54-205ENST00000424265 ZBTB38Q8NAP3 1195 aaPredicted RBP11.37□□□□□ -0.59
USP54-205ENST00000424265 RHPN1Q8TCX5 695 aa11.37□□□□□ -0.59
USP54-205ENST00000424265 SLC3A2P08195 630 aaKnown RBP11.37□□□□□ -0.59
USP54-205ENST00000424265 TMC4Q7Z404 712 aa11.37□□□□□ -0.59
USP54-205ENST00000424265 ATP10DQ9P241 1426 aa11.37□□□□□ -0.59
USP54-205ENST00000424265 ANKIB1Q9P2G1 1089 aa11.37□□□□□ -0.59
USP54-205ENST00000424265 CAMTA1Q9Y6Y1 1673 aa11.37□□□□□ -0.59
USP54-205ENST00000424265 SMC2O95347 1197 aa11.36□□□□□ -0.59
USP54-205ENST00000424265 NUCB1Q02818 461 aa11.36□□□□□ -0.59
USP54-205ENST00000424265 TTC41PQ6P2S7 1318 aa11.36□□□□□ -0.59
USP54-205ENST00000424265 RLBP1P12271 317 aa11.36□□□□□ -0.59
USP54-205ENST00000424265 FAM210AQ96ND0 272 aa11.36□□□□□ -0.59
USP54-205ENST00000424265 NACAP1Q9BZK3 213 aa11.36□□□□□ -0.59
Retrieved 100 of 20,778 RNA–protein pairs in 78.7 ms