RNA–Protein interactions for RNA: ENST00000423058.6

SCN1A-204, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene SCN1A, Length 8,191 nt, Biotype protein coding, Subcellular localisation Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-204ENST00000423058 TPTE2Q6XPS3 522 aa7.75□□□□□ -1.17
SCN1A-204ENST00000423058 VPS52Q8N1B4 723 aa7.75□□□□□ -1.17
SCN1A-204ENST00000423058 EPSTI1Q96J88 318 aa7.75□□□□□ -1.17
SCN1A-204ENST00000423058 WDR7Q9Y4E6 1490 aa7.75□□□□□ -1.17
SCN1A-204ENST00000423058 BACH1O14867 736 aa7.75□□□□□ -1.17
SCN1A-204ENST00000423058 ZBTB43O43298 467 aa7.75□□□□□ -1.17
SCN1A-204ENST00000423058 MCM10Q7L590 875 aa7.75□□□□□ -1.17
SCN1A-204ENST00000423058 RAB3IPQ96QF0 476 aaPredicted RBP7.75□□□□□ -1.17
SCN1A-204ENST00000423058 ARHGEF10LQ9HCE6 1279 aa7.75□□□□□ -1.17
SCN1A-204ENST00000423058 PTPN23Q9H3S7 1636 aa7.75□□□□□ -1.17
SCN1A-204ENST00000423058 CYP7A1P22680 504 aa7.75□□□□□ -1.17
SCN1A-204ENST00000423058 ARHGEF6Q15052 776 aa7.75□□□□□ -1.17
SCN1A-204ENST00000423058 KCNG4Q8TDN1 519 aa7.75□□□□□ -1.17
SCN1A-204ENST00000423058 RBM17Q96I25 401 aaKnown RBP7.75□□□□□ -1.17
SCN1A-204ENST00000423058 RPL13P26373 211 aaKnown RBP7.75□□□□□ -1.17
SCN1A-204ENST00000423058 RBM10P98175 930 aaKnown RBP7.75□□□□□ -1.17
SCN1A-204ENST00000423058 PICALMQ13492 652 aa7.75□□□□□ -1.17
SCN1A-204ENST00000423058 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP7.75□□□□□ -1.17
SCN1A-204ENST00000423058 SYKP43405 635 aa7.75□□□□□ -1.17
SCN1A-204ENST00000423058 KIF11P52732 1056 aa7.75□□□□□ -1.17
SCN1A-204ENST00000423058 TMEM57Q8N5G2 664 aa7.75□□□□□ -1.17
SCN1A-204ENST00000423058 GPR161Q8N6U8 529 aaKnown RBP7.75□□□□□ -1.17
SCN1A-204ENST00000423058 TFCP2L1Q9NZI6 479 aa7.75□□□□□ -1.17
SCN1A-204ENST00000423058 MTUS1Q9ULD2 1270 aa7.75□□□□□ -1.17
SCN1A-204ENST00000423058 CCDC160A6NGH7 325 aa7.75□□□□□ -1.17
SCN1A-204ENST00000423058 NOP56O00567 594 aaKnown RBP7.75□□□□□ -1.17
SCN1A-204ENST00000423058 DAPK3O43293 454 aa7.75□□□□□ -1.17
SCN1A-204ENST00000423058 NR1I2O75469 434 aa7.75□□□□□ -1.17
SCN1A-204ENST00000423058 TMC6Q7Z403 805 aa7.75□□□□□ -1.17
SCN1A-204ENST00000423058 IFT74Q96LB3 600 aa7.75□□□□□ -1.17
SCN1A-204ENST00000423058 NEK1Q96PY6 1258 aa7.75□□□□□ -1.17
SCN1A-204ENST00000423058 CCDC8Q9H0W5 538 aaPredicted RBP7.75□□□□□ -1.17
SCN1A-204ENST00000423058 MIS18AQ9NYP9 233 aa7.75□□□□□ -1.17
SCN1A-204ENST00000423058 PODXL2Q9NZ53 605 aa7.75□□□□□ -1.17
SCN1A-204ENST00000423058 CFTRP13569 1480 aa7.74□□□□□ -1.17
SCN1A-204ENST00000423058 MAGEB6P1A0A0J9YX57 407 aa7.74□□□□□ -1.17
SCN1A-204ENST00000423058 EIF6P56537 245 aaKnown RBP7.74□□□□□ -1.17
SCN1A-204ENST00000423058 TCIRG1Q13488 830 aa7.74□□□□□ -1.17
SCN1A-204ENST00000423058 SEPT6Q14141 434 aa7.74□□□□□ -1.17
SCN1A-204ENST00000423058 ATP6V0A2Q9Y487 856 aa7.74□□□□□ -1.17
SCN1A-204ENST00000423058 TROQ12816 1431 aaPredicted RBP7.74□□□□□ -1.17
SCN1A-204ENST00000423058 GOLGA6CA6NDK9 693 aa7.74□□□□□ -1.17
SCN1A-204ENST00000423058 GOLGA6BA6NDN3 693 aa7.74□□□□□ -1.17
SCN1A-204ENST00000423058 GOLGA6DP0CG33 693 aa7.74□□□□□ -1.17
SCN1A-204ENST00000423058 ATP2B3Q16720 1220 aa7.74□□□□□ -1.17
SCN1A-204ENST00000423058 RRAGBQ5VZM2 374 aa7.74□□□□□ -1.17
SCN1A-204ENST00000423058 RAB11FIP4Q86YS3 637 aa7.74□□□□□ -1.17
SCN1A-204ENST00000423058 GOLGA6AQ9NYA3 693 aa7.74□□□□□ -1.17
SCN1A-204ENST00000423058 RAPGEF3O95398 923 aa7.74□□□□□ -1.17
SCN1A-204ENST00000423058 KIF22Q14807 665 aa7.74□□□□□ -1.17
SCN1A-204ENST00000423058 INF2Q27J81 1249 aa7.74□□□□□ -1.17
SCN1A-204ENST00000423058 SLC4A8Q2Y0W8 1093 aa7.74□□□□□ -1.17
SCN1A-204ENST00000423058 FNBP1Q96RU3 617 aa7.74□□□□□ -1.17
SCN1A-204ENST00000423058 GLT8D2Q9H1C3 349 aa7.74□□□□□ -1.17
SCN1A-204ENST00000423058 FOXO3O43524 673 aa7.74□□□□□ -1.17
SCN1A-204ENST00000423058 KRT83P78385 493 aa7.74□□□□□ -1.17
SCN1A-204ENST00000423058 SNW1Q13573 536 aaKnown RBP7.74□□□□□ -1.17
SCN1A-204ENST00000423058 SLC4A4Q9Y6R1 1079 aa7.74□□□□□ -1.17
SCN1A-204ENST00000423058 NSD2O96028 1365 aa7.74□□□□□ -1.17
SCN1A-204ENST00000423058 CCDC171Q6TFL3 1326 aa7.74□□□□□ -1.17
SCN1A-204ENST00000423058 TACC1O75410 805 aa7.74□□□□□ -1.17
SCN1A-204ENST00000423058 CCDC129Q6ZRS4 1044 aa7.74□□□□□ -1.17
SCN1A-204ENST00000423058 C8orf37Q96NL8 207 aa7.74□□□□□ -1.17
SCN1A-204ENST00000423058 ZBTB3Q9H5J0 574 aa7.74□□□□□ -1.17
SCN1A-204ENST00000423058 ORC3Q9UBD5 711 aaPredicted RBP7.74□□□□□ -1.17
SCN1A-204ENST00000423058 MTRF1LQ9UGC7 380 aaKnown RBP7.74□□□□□ -1.17
SCN1A-204ENST00000423058 PAXBP1Q9Y5B6 917 aa7.74□□□□□ -1.17
SCN1A-204ENST00000423058 SNAPC4Q5SXM2 1469 aa7.74□□□□□ -1.17
SCN1A-204ENST00000423058 CTAGE9A4FU28 777 aa7.74□□□□□ -1.17
SCN1A-204ENST00000423058 F8W031 263 aaPredicted RBP7.74□□□□□ -1.17
SCN1A-204ENST00000423058 NEK11Q8NG66 645 aa7.74□□□□□ -1.17
SCN1A-204ENST00000423058 ECHDC1Q9NTX5 307 aa7.74□□□□□ -1.17
SCN1A-204ENST00000423058 STRN3Q13033 797 aa7.73□□□□□ -1.17
SCN1A-204ENST00000423058 RBM28Q9NW13 759 aaKnown RBP7.73□□□□□ -1.17
SCN1A-204ENST00000423058 KRT79Q5XKE5 535 aa7.73□□□□□ -1.17
SCN1A-204ENST00000423058 RPUSD2Q8IZ73 545 aaKnown RBP7.73□□□□□ -1.17
SCN1A-204ENST00000423058 ZCRB1Q8TBF4 217 aaKnown RBP7.73□□□□□ -1.17
SCN1A-204ENST00000423058 AMOTL2Q9Y2J4 779 aa7.73□□□□□ -1.17
SCN1A-204ENST00000423058 UBE3BQ7Z3V4 1068 aa7.73□□□□□ -1.17
SCN1A-204ENST00000423058 STIM2Q9P246 746 aa7.73□□□□□ -1.17
SCN1A-204ENST00000423058 TACC3Q9Y6A5 838 aa7.73□□□□□ -1.17
SCN1A-204ENST00000423058 TMEM110-MUSTN1A8MSY1 372 aa7.73□□□□□ -1.17
SCN1A-204ENST00000423058 KRT2P35908 639 aa7.73□□□□□ -1.17
SCN1A-204ENST00000423058 ARID5AQ03989 594 aa7.73□□□□□ -1.17
SCN1A-204ENST00000423058 PLCB4Q15147 1175 aa7.73□□□□□ -1.17
SCN1A-204ENST00000423058 PPP1R7Q15435 360 aa7.73□□□□□ -1.17
SCN1A-204ENST00000423058 FERMT3Q86UX7 667 aa7.73□□□□□ -1.17
SCN1A-204ENST00000423058 NOX5Q96PH1 765 aa7.73□□□□□ -1.17
SCN1A-204ENST00000423058 NPHP3Q7Z494 1330 aa7.73□□□□□ -1.17
SCN1A-204ENST00000423058 CCT6AP40227 531 aaKnown RBP7.73□□□□□ -1.17
SCN1A-204ENST00000423058 PPP1R2P41236 205 aa7.73□□□□□ -1.17
SCN1A-204ENST00000423058 UBASH3AP57075 661 aa7.73□□□□□ -1.17
SCN1A-204ENST00000423058 ASIC1P78348 528 aa7.73□□□□□ -1.17
SCN1A-204ENST00000423058 MSL1Q68DK7 614 aa7.73□□□□□ -1.17
SCN1A-204ENST00000423058 CCDC65Q8IXS2 484 aa7.73□□□□□ -1.17
SCN1A-204ENST00000423058 RTEL1Q9NZ71 1219 aa7.73□□□□□ -1.17
SCN1A-204ENST00000423058 EXOC7Q9UPT5 735 aa7.73□□□□□ -1.17
SCN1A-204ENST00000423058 ADGRL1O94910 1474 aa7.73□□□□□ -1.17
SCN1A-204ENST00000423058 EPB41P11171 864 aaKnown RBP7.72□□□□□ -1.17
SCN1A-204ENST00000423058 ITIH3Q06033 890 aa7.72□□□□□ -1.17
Retrieved 100 of 20,778 RNA–protein pairs in 18.9 ms