RNA–Protein interactions for RNA: ENST00000422797.5

LIMS1-207, Transcript of LIM zinc finger domain containing 1, humanhuman

TSL 1 (best)

Gene LIMS1, Length 1,544 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS1-207ENST00000422797 PTPN12Q05209 780 aaKnown RBP12.87□□□□□ -0.35
LIMS1-207ENST00000422797 BRAPQ7Z569 592 aa12.87□□□□□ -0.35
LIMS1-207ENST00000422797 ENGASEQ8NFI3 743 aa12.87□□□□□ -0.35
LIMS1-207ENST00000422797 DDX54Q8TDD1 881 aaKnown RBP12.87□□□□□ -0.35
LIMS1-207ENST00000422797 SIL1Q9H173 461 aa12.87□□□□□ -0.35
LIMS1-207ENST00000422797 SLC52A2Q9HAB3 445 aa12.87□□□□□ -0.35
LIMS1-207ENST00000422797 RTEL1Q9NZ71 1219 aa12.87□□□□□ -0.35
LIMS1-207ENST00000422797 DDX41Q9UJV9 622 aaKnown RBP12.87□□□□□ -0.35
LIMS1-207ENST00000422797 MORC2Q9Y6X9 1032 aaPredicted RBP12.87□□□□□ -0.35
LIMS1-207ENST00000422797 SCN11AQ9UI33 1791 aa12.86□□□□□ -0.35
LIMS1-207ENST00000422797 ZBTB7CA1YPR0 619 aa12.86□□□□□ -0.35
LIMS1-207ENST00000422797 PSDA5PKW4 1024 aaPredicted RBP12.86□□□□□ -0.35
LIMS1-207ENST00000422797 SNRPA1P09661 255 aaKnown RBP12.86□□□□□ -0.35
LIMS1-207ENST00000422797 EVCP57679 992 aa12.86□□□□□ -0.35
LIMS1-207ENST00000422797 EXOSC10Q01780 885 aaKnown RBP12.86□□□□□ -0.35
LIMS1-207ENST00000422797 ADALQ6DHV7 355 aa12.86□□□□□ -0.35
LIMS1-207ENST00000422797 ANKRD13DQ6ZTN6 518 aa12.86□□□□□ -0.35
LIMS1-207ENST00000422797 XAGE3Q8WTP9 111 aa12.86□□□□□ -0.35
LIMS1-207ENST00000422797 LRRC59Q96AG4 307 aaKnown RBP12.86□□□□□ -0.35
LIMS1-207ENST00000422797 TCEANC2Q96MN5 208 aa12.86□□□□□ -0.35
LIMS1-207ENST00000422797 MYD88Q99836 296 aa12.86□□□□□ -0.35
LIMS1-207ENST00000422797 ARID3AQ99856 593 aa12.86□□□□□ -0.35
LIMS1-207ENST00000422797 NRBP1Q9UHY1 535 aa12.86□□□□□ -0.35
LIMS1-207ENST00000422797 WDR19Q8NEZ3 1342 aa12.86□□□□□ -0.35
LIMS1-207ENST00000422797 C5P01031 1676 aa12.86□□□□□ -0.35
LIMS1-207ENST00000422797 ABCC12Q96J65 1359 aa12.85□□□□□ -0.35
LIMS1-207ENST00000422797 CCDC69A6NI79 296 aa12.85□□□□□ -0.35
LIMS1-207ENST00000422797 CEBPAP49715 358 aaPredicted RBP12.85□□□□□ -0.35
LIMS1-207ENST00000422797 TFCP2Q12800 502 aa12.85□□□□□ -0.35
LIMS1-207ENST00000422797 AIMP1Q12904 312 aaKnown RBP12.85□□□□□ -0.35
LIMS1-207ENST00000422797 SNW1Q13573 536 aaKnown RBP12.85□□□□□ -0.35
LIMS1-207ENST00000422797 ZMYM1Q5SVZ6 1142 aa12.85□□□□□ -0.35
LIMS1-207ENST00000422797 FSIP1Q8NA03 581 aa12.85□□□□□ -0.35
LIMS1-207ENST00000422797 ZNF142P52746 1687 aaPredicted RBP12.85□□□□□ -0.35
LIMS1-207ENST00000422797 SLU7O95391 586 aaKnown RBP12.84□□□□□ -0.35
LIMS1-207ENST00000422797 U2AF2P26368 475 aaKnown RBP eCLIP12.84□□□□□ -0.35
LIMS1-207ENST00000422797 ME1P48163 572 aa12.84□□□□□ -0.35
LIMS1-207ENST00000422797 CCDC144BQ3MJ40 725 aa12.84□□□□□ -0.35
LIMS1-207ENST00000422797 C11orf57Q6ZUT1 292 aaPredicted RBP12.84□□□□□ -0.35
LIMS1-207ENST00000422797 DHX40Q8IX18 779 aaKnown RBP12.84□□□□□ -0.35
LIMS1-207ENST00000422797 CCDC144CPQ8IYA2 1237 aa12.84□□□□□ -0.35
LIMS1-207ENST00000422797 CCAR2Q8N163 923 aaKnown RBP12.84□□□□□ -0.35
LIMS1-207ENST00000422797 KRT222Q8N1A0 295 aa12.84□□□□□ -0.35
LIMS1-207ENST00000422797 RAPGEF4Q8WZA2 1011 aa12.84□□□□□ -0.35
LIMS1-207ENST00000422797 PRDM10Q9NQV6 1147 aa12.84□□□□□ -0.35
LIMS1-207ENST00000422797 ATG3Q9NT62 314 aa12.84□□□□□ -0.35
LIMS1-207ENST00000422797 LAMB4A4D0S4 1761 aa12.84□□□□□ -0.35
LIMS1-207ENST00000422797 TRPM3Q9HCF6 1732 aaPredicted RBP12.84□□□□□ -0.35
LIMS1-207ENST00000422797 ZFYP08048 801 aaPredicted RBP12.83□□□□□ -0.35
LIMS1-207ENST00000422797 IL15P40933 162 aaPredicted RBP12.83□□□□□ -0.35
LIMS1-207ENST00000422797 HSPA2P54652 639 aa12.83□□□□□ -0.35
LIMS1-207ENST00000422797 CCZ1BP86790 482 aa12.83□□□□□ -0.35
LIMS1-207ENST00000422797 CCZ1P86791 482 aaPredicted RBP12.83□□□□□ -0.35
LIMS1-207ENST00000422797 ESCO1Q5FWF5 840 aa12.83□□□□□ -0.35
LIMS1-207ENST00000422797 COPS6Q7L5N1 327 aa12.83□□□□□ -0.35
LIMS1-207ENST00000422797 ANKLE2Q86XL3 938 aa12.83□□□□□ -0.35
LIMS1-207ENST00000422797 FMR1NBQ8N0W7 255 aaPredicted RBP12.83□□□□□ -0.35
LIMS1-207ENST00000422797 TTC5Q8N0Z6 440 aa12.83□□□□□ -0.35
LIMS1-207ENST00000422797 DDX11Q96FC9 970 aa12.83□□□□□ -0.35
LIMS1-207ENST00000422797 FMNL2Q96PY5 1086 aa12.83□□□□□ -0.35
LIMS1-207ENST00000422797 DNAJC2Q99543 621 aaKnown RBP12.83□□□□□ -0.35
LIMS1-207ENST00000422797 POLR3EQ9NVU0 708 aa12.83□□□□□ -0.35
LIMS1-207ENST00000422797 PAG1Q9NWQ8 432 aa12.83□□□□□ -0.35
LIMS1-207ENST00000422797 FBXO3Q9UK99 471 aa12.83□□□□□ -0.35
LIMS1-207ENST00000422797 TAF6LQ9Y6J9 622 aa12.83□□□□□ -0.35
LIMS1-207ENST00000422797 CARMIL3Q8ND23 1372 aa12.83□□□□□ -0.36
LIMS1-207ENST00000422797 CBFA2T2O43439 604 aa12.83□□□□□ -0.36
LIMS1-207ENST00000422797 ABCB7O75027 752 aa12.83□□□□□ -0.36
LIMS1-207ENST00000422797 CIAO1O76071 339 aa12.83□□□□□ -0.36
LIMS1-207ENST00000422797 TATP17735 454 aaPredicted RBP12.83□□□□□ -0.36
LIMS1-207ENST00000422797 PLBD2Q8NHP8 589 aa12.83□□□□□ -0.36
LIMS1-207ENST00000422797 JARID2Q92833 1246 aaPredicted RBP12.83□□□□□ -0.36
LIMS1-207ENST00000422797 TIGD1Q96MW7 591 aa12.83□□□□□ -0.36
LIMS1-207ENST00000422797 USP28Q96RU2 1077 aa12.83□□□□□ -0.36
LIMS1-207ENST00000422797 SRRTQ9BXP5 876 aaKnown RBP12.83□□□□□ -0.36
LIMS1-207ENST00000422797 GOLPH3LQ9H4A5 285 aa12.83□□□□□ -0.36
LIMS1-207ENST00000422797 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP12.83□□□□□ -0.36
LIMS1-207ENST00000422797 ERBB3P21860 1342 aa12.82□□□□□ -0.36
LIMS1-207ENST00000422797 PARP4Q9UKK3 1724 aaKnown RBP12.82□□□□□ -0.36
LIMS1-207ENST00000422797 ARFGEF2Q9Y6D5 1785 aa12.82□□□□□ -0.36
LIMS1-207ENST00000422797 KDM6AO15550 1401 aaPredicted RBP12.82□□□□□ -0.36
LIMS1-207ENST00000422797 AFDNP55196 1824 aaKnown RBP12.82□□□□□ -0.36
LIMS1-207ENST00000422797 IKBKBO14920 756 aa12.82□□□□□ -0.36
LIMS1-207ENST00000422797 RNF113AO15541 343 aaKnown RBP12.82□□□□□ -0.36
LIMS1-207ENST00000422797 SF3A1Q15459 793 aaKnown RBP12.82□□□□□ -0.36
LIMS1-207ENST00000422797 EPHA10Q5JZY3 1008 aa12.82□□□□□ -0.36
LIMS1-207ENST00000422797 AOPEPQ8N6M6 819 aa12.82□□□□□ -0.36
LIMS1-207ENST00000422797 DBNDD2Q9BQY9 259 aa12.82□□□□□ -0.36
LIMS1-207ENST00000422797 SDF4Q9BRK5 362 aa12.82□□□□□ -0.36
LIMS1-207ENST00000422797 KIAA1468Q9P260 1216 aa12.82□□□□□ -0.36
LIMS1-207ENST00000422797 FAM177BA6PVY3 158 aa12.81□□□□□ -0.36
LIMS1-207ENST00000422797 E7EWF7 191 aa12.81□□□□□ -0.36
LIMS1-207ENST00000422797 CTDNEP1O95476 244 aa12.81□□□□□ -0.36
LIMS1-207ENST00000422797 TPM1P09493 284 aa12.81□□□□□ -0.36
LIMS1-207ENST00000422797 PHKG2P15735 406 aa12.81□□□□□ -0.36
LIMS1-207ENST00000422797 SFPQP23246 707 aaKnown RBP eCLIP12.81□□□□□ -0.36
LIMS1-207ENST00000422797 PDIA3P30101 505 aaKnown RBP12.81□□□□□ -0.36
LIMS1-207ENST00000422797 NLRP12P59046 1061 aa12.81□□□□□ -0.36
LIMS1-207ENST00000422797 STK38Q15208 465 aa12.81□□□□□ -0.36
LIMS1-207ENST00000422797 STOX1Q6ZVD7 989 aa12.81□□□□□ -0.36
Retrieved 100 of 20,778 RNA–protein pairs in 20.5 ms