RNA–Protein interactions for RNA: ENST00000411525.1

LINC00539-201, long intergenic non-protein coding RNA 539, humanhuman

TSL 3

Gene LINC00539, Length 664 nt, Biotype lincRNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00539-201ENST00000411525 MX1P20591 662 aa13.83□□□□□ -0.2
LINC00539-201ENST00000411525 IL15P40933 162 aaPredicted RBP13.83□□□□□ -0.2
LINC00539-201ENST00000411525 PDE1AP54750 535 aa13.83□□□□□ -0.2
LINC00539-201ENST00000411525 CCDC152Q4G0S7 254 aa13.83□□□□□ -0.2
LINC00539-201ENST00000411525 BMP2KLQ5H9B9 411 aa13.83□□□□□ -0.2
LINC00539-201ENST00000411525 OLFM4Q6UX06 510 aa13.83□□□□□ -0.2
LINC00539-201ENST00000411525 ZNF594Q96JF6 807 aaPredicted RBP13.83□□□□□ -0.2
LINC00539-201ENST00000411525 CRAMP1Q96RY5 1269 aa13.83□□□□□ -0.2
LINC00539-201ENST00000411525 OSBPL3Q9H4L5 887 aa13.83□□□□□ -0.2
LINC00539-201ENST00000411525 ZNF609O15014 1411 aa13.82□□□□□ -0.2
LINC00539-201ENST00000411525 LMOD1P29536 600 aaPredicted RBP13.82□□□□□ -0.2
LINC00539-201ENST00000411525 C8orf34Q49A92 452 aa13.82□□□□□ -0.2
LINC00539-201ENST00000411525 SLC10A5Q5PT55 438 aa13.82□□□□□ -0.2
LINC00539-201ENST00000411525 TTC22Q5TAA0 569 aa13.82□□□□□ -0.2
LINC00539-201ENST00000411525 NLRP3Q96P20 1036 aa13.82□□□□□ -0.2
LINC00539-201ENST00000411525 TSHZ2Q9NRE2 1034 aa13.82□□□□□ -0.2
LINC00539-201ENST00000411525 STAP2Q9UGK3 403 aa13.82□□□□□ -0.2
LINC00539-201ENST00000411525 SNED1Q8TER0 1413 aa13.81□□□□□ -0.2
LINC00539-201ENST00000411525 GSPT1P15170 499 aaKnown RBP13.81□□□□□ -0.2
LINC00539-201ENST00000411525 SF3B3Q15393 1217 aaKnown RBP13.81□□□□□ -0.2
LINC00539-201ENST00000411525 ATG9AQ7Z3C6 839 aa13.81□□□□□ -0.2
LINC00539-201ENST00000411525 AACSQ86V21 672 aa13.81□□□□□ -0.2
LINC00539-201ENST00000411525 CNTROBQ8N137 903 aa13.81□□□□□ -0.2
LINC00539-201ENST00000411525 AIDAQ96BJ3 306 aa13.81□□□□□ -0.2
LINC00539-201ENST00000411525 BACH2Q9BYV9 841 aa13.81□□□□□ -0.2
LINC00539-201ENST00000411525 VPS33BQ9H267 617 aa13.81□□□□□ -0.2
LINC00539-201ENST00000411525 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP13.81□□□□□ -0.2
LINC00539-201ENST00000411525 PPEF1O14829 653 aaPredicted RBP13.8□□□□□ -0.2
LINC00539-201ENST00000411525 CAPN15O75808 1086 aa13.8□□□□□ -0.2
LINC00539-201ENST00000411525 IFIT2P09913 472 aaKnown RBP13.8□□□□□ -0.2
LINC00539-201ENST00000411525 TFCP2Q12800 502 aa13.8□□□□□ -0.2
LINC00539-201ENST00000411525 LRRC24Q50LG9 513 aa13.8□□□□□ -0.2
LINC00539-201ENST00000411525 LARGE2Q8N3Y3 721 aa13.8□□□□□ -0.2
LINC00539-201ENST00000411525 EAF2Q96CJ1 260 aaPredicted RBP13.8□□□□□ -0.2
LINC00539-201ENST00000411525 GPATCH3Q96I76 525 aa13.8□□□□□ -0.2
LINC00539-201ENST00000411525 TTC41PQ6P2S7 1318 aa13.8□□□□□ -0.2
LINC00539-201ENST00000411525 A0A1B0GUL6 1792 aa13.8□□□□□ -0.2
LINC00539-201ENST00000411525 TRPM7Q96QT4 1865 aa13.8□□□□□ -0.2
LINC00539-201ENST00000411525 COL4A1P02462 1669 aa13.79□□□□□ -0.2
LINC00539-201ENST00000411525 TNNI3KQ59H18 835 aa13.79□□□□□ -0.2
LINC00539-201ENST00000411525 TSHZ3Q63HK5 1081 aa13.79□□□□□ -0.2
LINC00539-201ENST00000411525 C3orf67Q6ZVT6 689 aa13.79□□□□□ -0.2
LINC00539-201ENST00000411525 SUPT20HQ8NEM7 779 aa13.79□□□□□ -0.2
LINC00539-201ENST00000411525 PUS3Q9BZE2 481 aaKnown RBP13.79□□□□□ -0.2
LINC00539-201ENST00000411525 GPR108Q9NPR9 543 aa13.79□□□□□ -0.2
LINC00539-201ENST00000411525 CNNM1Q9NRU3 951 aa13.79□□□□□ -0.2
LINC00539-201ENST00000411525 GJA3Q9Y6H8 435 aa13.79□□□□□ -0.2
LINC00539-201ENST00000411525 FPGT-TNNI3KV9GXZ4 949 aa13.79□□□□□ -0.2
LINC00539-201ENST00000411525 ARAP2Q8WZ64 1704 aa13.78□□□□□ -0.2
LINC00539-201ENST00000411525 VEGFBP49765 207 aa13.78□□□□□ -0.2
LINC00539-201ENST00000411525 DEFB115Q30KQ5 88 aa13.78□□□□□ -0.2
LINC00539-201ENST00000411525 MAP1SQ66K74 1059 aaPredicted RBP13.78□□□□□ -0.2
LINC00539-201ENST00000411525 LDHAL6AQ6ZMR3 332 aa13.78□□□□□ -0.2
LINC00539-201ENST00000411525 NIM1KQ8IY84 436 aa13.78□□□□□ -0.2
LINC00539-201ENST00000411525 CDC5LQ99459 802 aaKnown RBP13.78□□□□□ -0.2
LINC00539-201ENST00000411525 PRDM10Q9NQV6 1147 aa13.78□□□□□ -0.2
LINC00539-201ENST00000411525 SEC31BQ9NQW1 1179 aa13.78□□□□□ -0.2
LINC00539-201ENST00000411525 RASSF10A6NK89 507 aa13.77□□□□□ -0.21
LINC00539-201ENST00000411525 IGHMBP2P38935 993 aaKnown RBP13.77□□□□□ -0.21
LINC00539-201ENST00000411525 CTCFP49711 727 aaPredicted RBP13.77□□□□□ -0.21
LINC00539-201ENST00000411525 METTL24Q5JXM2 366 aa13.77□□□□□ -0.21
LINC00539-201ENST00000411525 AK9Q5TCS8 1911 aa13.77□□□□□ -0.21
LINC00539-201ENST00000411525 USP50Q70EL3 339 aaPredicted RBP13.77□□□□□ -0.21
LINC00539-201ENST00000411525 PI4K2BQ8TCG2 481 aa13.77□□□□□ -0.21
LINC00539-201ENST00000411525 CCDC8Q9H0W5 538 aaPredicted RBP13.77□□□□□ -0.21
LINC00539-201ENST00000411525 ECHDC1Q9NTX5 307 aa13.77□□□□□ -0.21
LINC00539-201ENST00000411525 TLR7Q9NYK1 1049 aaKnown RBP13.77□□□□□ -0.21
LINC00539-201ENST00000411525 CEP126Q9P2H0 1117 aa13.77□□□□□ -0.21
LINC00539-201ENST00000411525 ATP6V0A2Q9Y487 856 aa13.77□□□□□ -0.21
LINC00539-201ENST00000411525 RIPOR2Q9Y4F9 1068 aa13.77□□□□□ -0.21
LINC00539-201ENST00000411525 MROH5Q6ZUA9 1318 aa13.76□□□□□ -0.21
LINC00539-201ENST00000411525 ERC2O15083 957 aa13.76□□□□□ -0.21
LINC00539-201ENST00000411525 FOXN1O15353 648 aa13.76□□□□□ -0.21
LINC00539-201ENST00000411525 PPIP5K2O43314 1243 aa13.76□□□□□ -0.21
LINC00539-201ENST00000411525 BBOX1O75936 387 aa13.76□□□□□ -0.21
LINC00539-201ENST00000411525 GLRX3O76003 335 aaKnown RBP13.76□□□□□ -0.21
LINC00539-201ENST00000411525 MPHOSPH8Q99549 860 aa13.76□□□□□ -0.21
LINC00539-201ENST00000411525 DBNLQ9UJU6 430 aaKnown RBP13.76□□□□□ -0.21
LINC00539-201ENST00000411525 CDC45O75419 566 aa13.75□□□□□ -0.21
LINC00539-201ENST00000411525 SDSP20132 328 aa13.75□□□□□ -0.21
LINC00539-201ENST00000411525 SCNN1DP51172 638 aa13.75□□□□□ -0.21
LINC00539-201ENST00000411525 MAP2K1Q02750 393 aaPredicted RBP13.75□□□□□ -0.21
LINC00539-201ENST00000411525 ANKRD18AQ8IVF6 992 aa13.75□□□□□ -0.21
LINC00539-201ENST00000411525 VGLL2Q8N8G2 317 aa13.75□□□□□ -0.21
LINC00539-201ENST00000411525 WBP1LQ9NX94 342 aa13.75□□□□□ -0.21
LINC00539-201ENST00000411525 ABT1Q9ULW3 272 aaKnown RBP13.75□□□□□ -0.21
LINC00539-201ENST00000411525 AKAP2Q9Y2D5 859 aa13.75□□□□□ -0.21
LINC00539-201ENST00000411525 TAF1P21675 1872 aa13.75□□□□□ -0.21
LINC00539-201ENST00000411525 COL4A5P29400 1685 aa13.75□□□□□ -0.21
LINC00539-201ENST00000411525 WDR33Q9C0J8 1336 aaKnown RBP13.74□□□□□ -0.21
LINC00539-201ENST00000411525 LTBP1Q14766 1721 aa13.74□□□□□ -0.21
LINC00539-201ENST00000411525 A0A1B0GUL7 405 aa13.74□□□□□ -0.21
LINC00539-201ENST00000411525 EPS15P42566 896 aa13.74□□□□□ -0.21
LINC00539-201ENST00000411525 ECE1P42892 770 aa13.74□□□□□ -0.21
LINC00539-201ENST00000411525 DDX46Q7L014 1031 aaKnown RBP13.74□□□□□ -0.21
LINC00539-201ENST00000411525 TMC4Q7Z404 712 aa13.74□□□□□ -0.21
LINC00539-201ENST00000411525 SP8Q8IXZ3 490 aa13.74□□□□□ -0.21
LINC00539-201ENST00000411525 DBNDD2Q9BQY9 259 aa13.74□□□□□ -0.21
LINC00539-201ENST00000411525 RTFDC1Q9BY42 306 aaPredicted RBP13.74□□□□□ -0.21
LINC00539-201ENST00000411525 ZNRF3Q9ULT6 936 aa13.74□□□□□ -0.21
Retrieved 100 of 20,778 RNA–protein pairs in 15.8 ms