RNA–Protein interactions for RNA: ENST00000409958.6

VSX1-204, Transcript of visual system homeobox 1, humanhuman

TSL 1 (best)

Gene VSX1, Length 1,305 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VSX1-204ENST00000409958 RPS12P25398 132 aaKnown RBP25.93■■□□□ 1.74
VSX1-204ENST00000409958 PTPN12Q05209 780 aaKnown RBP25.93■■□□□ 1.74
VSX1-204ENST00000409958 DPF2Q92785 391 aa25.93■■□□□ 1.74
VSX1-204ENST00000409958 ZBTB12Q9Y330 459 aaPredicted RBP25.93■■□□□ 1.74
VSX1-204ENST00000409958 GNAI2P04899 355 aa25.92■■□□□ 1.74
VSX1-204ENST00000409958 UBE4AQ14139 1066 aa25.92■■□□□ 1.74
VSX1-204ENST00000409958 CHADLQ6NUI6 762 aa25.92■■□□□ 1.74
VSX1-204ENST00000409958 ADARB2Q9NS39 739 aaKnown RBP25.92■■□□□ 1.74
VSX1-204ENST00000409958 EYA2O00167 538 aa25.91■■□□□ 1.74
VSX1-204ENST00000409958 MS4A1P11836 297 aa25.91■■□□□ 1.74
VSX1-204ENST00000409958 MTX1Q13505 466 aa25.91■■□□□ 1.74
VSX1-204ENST00000409958 METTL24Q5JXM2 366 aa25.91■■□□□ 1.74
VSX1-204ENST00000409958 USP50Q70EL3 339 aaPredicted RBP25.91■■□□□ 1.74
VSX1-204ENST00000409958 FBXO3Q9UK99 471 aa25.91■■□□□ 1.74
VSX1-204ENST00000409958 USP17L3A6NCW0 530 aa25.9■■□□□ 1.74
VSX1-204ENST00000409958 USP17L4A6NCW7 530 aa25.9■■□□□ 1.74
VSX1-204ENST00000409958 USP17L1Q7RTZ2 530 aa25.9■■□□□ 1.74
VSX1-204ENST00000409958 ITPRIPQ8IWB1 547 aa25.9■■□□□ 1.74
VSX1-204ENST00000409958 CNOT7Q9UIV1 285 aaKnown RBP25.9■■□□□ 1.74
VSX1-204ENST00000409958 ZNF609O15014 1411 aa25.9■■□□□ 1.74
VSX1-204ENST00000409958 PSME4Q14997 1843 aa25.9■■□□□ 1.74
VSX1-204ENST00000409958 RSBN1LQ6PCB5 846 aaPredicted RBP25.89■■□□□ 1.74
VSX1-204ENST00000409958 VGLL2Q8N8G2 317 aa25.89■■□□□ 1.74
VSX1-204ENST00000409958 ADAMTSL1Q8N6G6 1762 aa25.89■■□□□ 1.74
VSX1-204ENST00000409958 H7C1D1 291 aa25.88■■□□□ 1.73
VSX1-204ENST00000409958 ZNF804AQ7Z570 1209 aa25.88■■□□□ 1.73
VSX1-204ENST00000409958 MICALL2Q8IY33 904 aa25.88■■□□□ 1.73
VSX1-204ENST00000409958 CD209Q9NNX6 404 aa25.88■■□□□ 1.73
VSX1-204ENST00000409958 CLEC11AQ9Y240 323 aa25.88■■□□□ 1.73
VSX1-204ENST00000409958 CIAO1O76071 339 aa25.88■■□□□ 1.73
VSX1-204ENST00000409958 PDE8BO95263 885 aa25.88■■□□□ 1.73
VSX1-204ENST00000409958 AGBL3Q8NEM8 1001 aa25.88■■□□□ 1.73
VSX1-204ENST00000409958 COPRSQ9NQ92 184 aa25.88■■□□□ 1.73
VSX1-204ENST00000409958 ZBTB7BO15156 539 aaPredicted RBP25.87■■□□□ 1.73
VSX1-204ENST00000409958 SRGAP3O43295 1099 aa25.87■■□□□ 1.73
VSX1-204ENST00000409958 HTRA3P83110 453 aa25.87■■□□□ 1.73
VSX1-204ENST00000409958 STRIP1Q5VSL9 837 aa25.87■■□□□ 1.73
VSX1-204ENST00000409958 ATG9AQ7Z3C6 839 aa25.87■■□□□ 1.73
VSX1-204ENST00000409958 PANK1Q8TE04 598 aa25.87■■□□□ 1.73
VSX1-204ENST00000409958 YTHDC1Q96MU7 727 aaKnown RBP25.87■■□□□ 1.73
VSX1-204ENST00000409958 SHTN1A0MZ66 631 aa25.86■■□□□ 1.73
VSX1-204ENST00000409958 DACT2Q5SW24 774 aa25.86■■□□□ 1.73
VSX1-204ENST00000409958 CEP350Q5VT06 3117 aa25.85■■□□□ 1.73
VSX1-204ENST00000409958 IL1R1P14778 569 aa25.85■■□□□ 1.73
VSX1-204ENST00000409958 GMLQ99445 158 aa25.85■■□□□ 1.73
VSX1-204ENST00000409958 SIL1Q9H173 461 aa25.85■■□□□ 1.73
VSX1-204ENST00000409958 PA2G4Q9UQ80 394 aaKnown RBP25.85■■□□□ 1.73
VSX1-204ENST00000409958 APLP1P51693 650 aa25.84■■□□□ 1.73
VSX1-204ENST00000409958 TTLL5Q6EMB2 1281 aa25.84■■□□□ 1.73
VSX1-204ENST00000409958 MYO3BQ8WXR4 1341 aa25.83■■□□□ 1.73
VSX1-204ENST00000409958 IL15P40933 162 aaPredicted RBP25.83■■□□□ 1.73
VSX1-204ENST00000409958 PUM3Q15397 648 aaKnown RBP25.83■■□□□ 1.73
VSX1-204ENST00000409958 TRPM4Q8TD43 1214 aa25.83■■□□□ 1.73
VSX1-204ENST00000409958 FBXW7Q969H0 707 aa25.83■■□□□ 1.73
VSX1-204ENST00000409958 FAM84BQ96KN1 310 aaPredicted RBP25.83■■□□□ 1.73
VSX1-204ENST00000409958 FGFR2P21802 821 aa25.82■■□□□ 1.72
VSX1-204ENST00000409958 HIBADHP31937 336 aaKnown RBP25.82■■□□□ 1.72
VSX1-204ENST00000409958 HIRAP54198 1017 aaPredicted RBP25.82■■□□□ 1.72
VSX1-204ENST00000409958 GTF2IP78347 998 aa25.82■■□□□ 1.72
VSX1-204ENST00000409958 MAP1SQ66K74 1059 aaPredicted RBP25.82■■□□□ 1.72
VSX1-204ENST00000409958 GOLGA6L2Q8N9W4 650 aaPredicted RBP25.82■■□□□ 1.72
VSX1-204ENST00000409958 ZC3H15Q8WU90 426 aaKnown RBP25.82■■□□□ 1.72
VSX1-204ENST00000409958 ZNF646O15015 1829 aaPredicted RBP25.81■■□□□ 1.72
VSX1-204ENST00000409958 PNMA6EA0A0J9YXQ4 647 aa25.81■■□□□ 1.72
VSX1-204ENST00000409958 ITGBL1O95965 494 aaPredicted RBP25.81■■□□□ 1.72
VSX1-204ENST00000409958 GYG1P46976 350 aa25.81■■□□□ 1.72
VSX1-204ENST00000409958 ZNF280AP59817 542 aaPredicted RBP25.81■■□□□ 1.72
VSX1-204ENST00000409958 SAMD7Q7Z3H4 446 aa25.81■■□□□ 1.72
VSX1-204ENST00000409958 CNTROBQ8N137 903 aa25.81■■□□□ 1.72
VSX1-204ENST00000409958 CEP126Q9P2H0 1117 aa25.81■■□□□ 1.72
VSX1-204ENST00000409958 PGAP2Q9UHJ9 254 aa25.81■■□□□ 1.72
VSX1-204ENST00000409958 IFIT1P09914 478 aaKnown RBP25.8■■□□□ 1.72
VSX1-204ENST00000409958 USP17L8P0C7I0 530 aa25.8■■□□□ 1.72
VSX1-204ENST00000409958 MVPQ14764 893 aaKnown RBP25.8■■□□□ 1.72
VSX1-204ENST00000409958 TBC1D10BQ4KMP7 808 aaPredicted RBP25.8■■□□□ 1.72
VSX1-204ENST00000409958 TDRD7Q8NHU6 1098 aaKnown RBP25.8■■□□□ 1.72
VSX1-204ENST00000409958 PASKQ96RG2 1323 aa25.8■■□□□ 1.72
VSX1-204ENST00000409958 ATP8B2P98198 1209 aa25.79■■□□□ 1.72
VSX1-204ENST00000409958 CAVIN4Q5BKX8 364 aa25.79■■□□□ 1.72
VSX1-204ENST00000409958 FBXO33Q7Z6M2 555 aa25.79■■□□□ 1.72
VSX1-204ENST00000409958 LPIN2Q92539 896 aa25.79■■□□□ 1.72
VSX1-204ENST00000409958 MXD3Q9BW11 206 aa25.79■■□□□ 1.72
VSX1-204ENST00000409958 C1orf115Q9H7X2 142 aa25.79■■□□□ 1.72
VSX1-204ENST00000409958 SASH1O94885 1247 aa25.78■■□□□ 1.72
VSX1-204ENST00000409958 SLC5A1P13866 664 aa25.78■■□□□ 1.72
VSX1-204ENST00000409958 MMP14P50281 582 aa25.78■■□□□ 1.72
VSX1-204ENST00000409958 PDE3AQ14432 1141 aa25.78■■□□□ 1.72
VSX1-204ENST00000409958 VPS37DQ86XT2 251 aa25.78■■□□□ 1.72
VSX1-204ENST00000409958 DDX19BQ9UMR2 479 aa25.78■■□□□ 1.72
VSX1-204ENST00000409958 EGFRP00533 1210 aa25.77■■□□□ 1.72
VSX1-204ENST00000409958 FKBP1AP62942 108 aaKnown RBP25.77■■□□□ 1.72
VSX1-204ENST00000409958 POLA2Q14181 598 aa25.77■■□□□ 1.72
VSX1-204ENST00000409958 KIF4BQ2VIQ3 1234 aa25.77■■□□□ 1.72
VSX1-204ENST00000409958 RBM26Q5T8P6 1007 aaKnown RBP25.77■■□□□ 1.72
VSX1-204ENST00000409958 COG6Q9Y2V7 657 aa25.77■■□□□ 1.72
VSX1-204ENST00000409958 FAM205AQ6ZU69 1335 aa25.76■■□□□ 1.71
VSX1-204ENST00000409958 OGFOD1Q8N543 542 aa25.76■■□□□ 1.71
VSX1-204ENST00000409958 SSH3Q8TE77 659 aa25.76■■□□□ 1.71
VSX1-204ENST00000409958 ATP2B3Q16720 1220 aa25.75■■□□□ 1.71
VSX1-204ENST00000409958 MYOZ2Q9NPC6 264 aa25.75■■□□□ 1.71
Retrieved 100 of 20,778 RNA–protein pairs in 42.9 ms