RNA–Protein interactions for RNA: ENST00000409050.1

SCN1A-203, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

TSL 5 BASIC

Gene SCN1A, Length 5,946 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-203ENST00000409050 PLCD1P51178 756 aa6.9□□□□□ -1.3
SCN1A-203ENST00000409050 XPCQ01831 940 aaPredicted RBP6.9□□□□□ -1.3
SCN1A-203ENST00000409050 RTN1Q16799 776 aa6.9□□□□□ -1.3
SCN1A-203ENST00000409050 LMNTD2Q8IXW0 634 aa6.9□□□□□ -1.3
SCN1A-203ENST00000409050 FAM76AQ8TAV0 307 aa6.9□□□□□ -1.3
SCN1A-203ENST00000409050 RHPN1Q8TCX5 695 aa6.9□□□□□ -1.3
SCN1A-203ENST00000409050 CCDC51Q96ER9 411 aa6.9□□□□□ -1.3
SCN1A-203ENST00000409050 BCCIPQ9P287 314 aaKnown RBP eCLIP6.9□□□□□ -1.3
SCN1A-203ENST00000409050 A0A1B0GUL7 405 aa6.9□□□□□ -1.3
SCN1A-203ENST00000409050 ACTN4O43707 911 aaKnown RBP6.9□□□□□ -1.3
SCN1A-203ENST00000409050 TRIM37O94972 964 aa6.9□□□□□ -1.3
SCN1A-203ENST00000409050 UBE4AQ14139 1066 aa6.9□□□□□ -1.3
SCN1A-203ENST00000409050 TTC31Q49AM3 519 aaPredicted RBP6.9□□□□□ -1.3
SCN1A-203ENST00000409050 RRAGBQ5VZM2 374 aa6.9□□□□□ -1.3
SCN1A-203ENST00000409050 CCDC42Q96M95 316 aa6.9□□□□□ -1.3
SCN1A-203ENST00000409050 ELP1O95163 1332 aa6.9□□□□□ -1.3
SCN1A-203ENST00000409050 MINDY4BA8MYZ0 360 aa6.9□□□□□ -1.31
SCN1A-203ENST00000409050 CALCOCO2Q13137 446 aa6.9□□□□□ -1.31
SCN1A-203ENST00000409050 IQUBQ8NA54 791 aa6.9□□□□□ -1.31
SCN1A-203ENST00000409050 MAP7D1Q3KQU3 841 aa6.9□□□□□ -1.31
SCN1A-203ENST00000409050 NEK11Q8NG66 645 aa6.9□□□□□ -1.31
SCN1A-203ENST00000409050 SCLT1Q96NL6 688 aa6.9□□□□□ -1.31
SCN1A-203ENST00000409050 PLCB1Q9NQ66 1216 aa6.9□□□□□ -1.31
SCN1A-203ENST00000409050 PHF8Q9UPP1 1060 aa6.9□□□□□ -1.31
SCN1A-203ENST00000409050 DMRT2Q9Y5R5 561 aa6.9□□□□□ -1.31
SCN1A-203ENST00000409050 RTL1A6NKG5 1358 aa6.9□□□□□ -1.31
SCN1A-203ENST00000409050 TSPY2A6NKD2 308 aa6.89□□□□□ -1.31
SCN1A-203ENST00000409050 SPTLC2O15270 562 aa6.89□□□□□ -1.31
SCN1A-203ENST00000409050 CIB2O75838 187 aa6.89□□□□□ -1.31
SCN1A-203ENST00000409050 TRPC3Q13507 836 aa6.89□□□□□ -1.31
SCN1A-203ENST00000409050 MAP3K21Q5TCX8 1036 aa6.89□□□□□ -1.31
SCN1A-203ENST00000409050 KRT79Q5XKE5 535 aa6.89□□□□□ -1.31
SCN1A-203ENST00000409050 TAOK1Q7L7X3 1001 aa6.89□□□□□ -1.31
SCN1A-203ENST00000409050 RPGRQ92834 1020 aaKnown RBP6.89□□□□□ -1.31
SCN1A-203ENST00000409050 CCDC97Q96F63 343 aaPredicted RBP6.89□□□□□ -1.31
SCN1A-203ENST00000409050 TRMT112Q9UI30 125 aaKnown RBP6.89□□□□□ -1.31
SCN1A-203ENST00000409050 GBP1P32455 592 aa6.89□□□□□ -1.31
SCN1A-203ENST00000409050 NT5C2P49902 561 aa6.89□□□□□ -1.31
SCN1A-203ENST00000409050 NCBP1Q09161 790 aaKnown RBP6.89□□□□□ -1.31
SCN1A-203ENST00000409050 HELLSQ9NRZ9 838 aa6.89□□□□□ -1.31
SCN1A-203ENST00000409050 PARP2Q9UGN5 583 aa6.89□□□□□ -1.31
SCN1A-203ENST00000409050 PNMA2Q9UL42 364 aa6.89□□□□□ -1.31
SCN1A-203ENST00000409050 RILPL1Q5EBL4 403 aa6.89□□□□□ -1.31
SCN1A-203ENST00000409050 TCERG1LQ5VWI1 586 aa6.89□□□□□ -1.31
SCN1A-203ENST00000409050 CNPY4Q8N129 248 aa6.89□□□□□ -1.31
SCN1A-203ENST00000409050 ALG1Q9BT22 464 aa6.89□□□□□ -1.31
SCN1A-203ENST00000409050 NKIRAS1Q9NYS0 192 aa6.89□□□□□ -1.31
SCN1A-203ENST00000409050 DUOX2Q9NRD8 1548 aa6.89□□□□□ -1.31
SCN1A-203ENST00000409050 PPFIA4O75335 1185 aa6.89□□□□□ -1.31
SCN1A-203ENST00000409050 GMNNO75496 209 aa6.89□□□□□ -1.31
SCN1A-203ENST00000409050 GAS8O95995 478 aa6.89□□□□□ -1.31
SCN1A-203ENST00000409050 IDEP14735 1019 aa6.89□□□□□ -1.31
SCN1A-203ENST00000409050 SYT1P21579 422 aa6.89□□□□□ -1.31
SCN1A-203ENST00000409050 APBA1Q02410 837 aa6.89□□□□□ -1.31
SCN1A-203ENST00000409050 CCDC38Q502W7 563 aa6.89□□□□□ -1.31
SCN1A-203ENST00000409050 NUTM2GQ5VZR2 741 aa6.89□□□□□ -1.31
SCN1A-203ENST00000409050 KIFAP3Q92845 792 aa6.89□□□□□ -1.31
SCN1A-203ENST00000409050 NYXQ9GZU5 481 aa6.89□□□□□ -1.31
SCN1A-203ENST00000409050 UBA5Q9GZZ9 404 aa6.89□□□□□ -1.31
SCN1A-203ENST00000409050 VCXQ9H320 206 aa6.89□□□□□ -1.31
SCN1A-203ENST00000409050 SH2D4AQ9H788 454 aa6.89□□□□□ -1.31
SCN1A-203ENST00000409050 FEZ2Q9UHY8 353 aaPredicted RBP6.89□□□□□ -1.31
SCN1A-203ENST00000409050 CKAP2LQ8IYA6 745 aa6.89□□□□□ -1.31
SCN1A-203ENST00000409050 PHF23Q9BUL5 403 aaPredicted RBP6.89□□□□□ -1.31
SCN1A-203ENST00000409050 PDE1AP54750 535 aa6.88□□□□□ -1.31
SCN1A-203ENST00000409050 MYL5Q02045 173 aa6.88□□□□□ -1.31
SCN1A-203ENST00000409050 SEL1L2Q5TEA6 688 aa6.88□□□□□ -1.31
SCN1A-203ENST00000409050 FYB2Q5VWT5 728 aa6.88□□□□□ -1.31
SCN1A-203ENST00000409050 CCDC82Q8N4S0 544 aa6.88□□□□□ -1.31
SCN1A-203ENST00000409050 TMEM87BQ96K49 555 aa6.88□□□□□ -1.31
SCN1A-203ENST00000409050 RASSF4Q9H2L5 321 aa6.88□□□□□ -1.31
SCN1A-203ENST00000409050 VCX3BQ9H321 246 aa6.88□□□□□ -1.31
SCN1A-203ENST00000409050 COMMD10Q9Y6G5 202 aa6.88□□□□□ -1.31
SCN1A-203ENST00000409050 ADGRL1O94910 1474 aa6.88□□□□□ -1.31
SCN1A-203ENST00000409050 LGSNQ5TDP6 509 aa6.88□□□□□ -1.31
SCN1A-203ENST00000409050 VTI1AQ96AJ9 217 aa6.88□□□□□ -1.31
SCN1A-203ENST00000409050 ITSN2Q9NZM3 1697 aa6.88□□□□□ -1.31
SCN1A-203ENST00000409050 STX10O60499 249 aa6.88□□□□□ -1.31
SCN1A-203ENST00000409050 CAPN2P17655 700 aa6.88□□□□□ -1.31
SCN1A-203ENST00000409050 TYRO3Q06418 890 aa6.88□□□□□ -1.31
SCN1A-203ENST00000409050 PPFIA1Q13136 1202 aa6.88□□□□□ -1.31
SCN1A-203ENST00000409050 SYCE1Q8N0S2 351 aa6.88□□□□□ -1.31
SCN1A-203ENST00000409050 DDX54Q8TDD1 881 aaKnown RBP6.88□□□□□ -1.31
SCN1A-203ENST00000409050 RAB3IPQ96QF0 476 aaPredicted RBP6.88□□□□□ -1.31
SCN1A-203ENST00000409050 LZTS2Q9BRK4 669 aa6.88□□□□□ -1.31
SCN1A-203ENST00000409050 DNAI1Q9UI46 699 aa6.88□□□□□ -1.31
SCN1A-203ENST00000409050 PCF11O94913 1555 aaKnown RBP6.88□□□□□ -1.31
SCN1A-203ENST00000409050 PARD3Q8TEW0 1356 aa6.88□□□□□ -1.31
SCN1A-203ENST00000409050 KLF18A0A0U1RQI7 1052 aa6.88□□□□□ -1.31
SCN1A-203ENST00000409050 KDM4AO75164 1064 aa6.88□□□□□ -1.31
SCN1A-203ENST00000409050 KRT2P35908 639 aa6.88□□□□□ -1.31
SCN1A-203ENST00000409050 RASSF2P50749 326 aa6.88□□□□□ -1.31
SCN1A-203ENST00000409050 ATP11AP98196 1134 aa6.88□□□□□ -1.31
SCN1A-203ENST00000409050 TSNAXIP1Q2TAA8 658 aa6.88□□□□□ -1.31
SCN1A-203ENST00000409050 ANO6Q4KMQ2 910 aa6.88□□□□□ -1.31
SCN1A-203ENST00000409050 NBPF6Q5VWK0 638 aa6.88□□□□□ -1.31
SCN1A-203ENST00000409050 PAXIP1Q6ZW49 1069 aaPredicted RBP6.88□□□□□ -1.31
SCN1A-203ENST00000409050 PHLDB2Q86SQ0 1253 aa6.88□□□□□ -1.31
SCN1A-203ENST00000409050 TICAM2Q86XR7 235 aa6.88□□□□□ -1.31
SCN1A-203ENST00000409050 MLKLQ8NB16 471 aa6.88□□□□□ -1.31
Retrieved 100 of 20,778 RNA–protein pairs in 128.2 ms