RNA–Protein interactions for RNA: ENST00000398729.1

VCX3A-202, Transcript of variable charge X-linked 3A, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene VCX3A, Length 808 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VCX3A-202ENST00000398729 CSF1RP07333 972 aa17.01■□□□□ 0.31
VCX3A-202ENST00000398729 RPS12P25398 132 aaKnown RBP17.01■□□□□ 0.31
VCX3A-202ENST00000398729 MPHOSPH8Q99549 860 aa17.01■□□□□ 0.31
VCX3A-202ENST00000398729 ALDH1L1O75891 902 aa17■□□□□ 0.31
VCX3A-202ENST00000398729 SLFN5Q08AF3 891 aa17■□□□□ 0.31
VCX3A-202ENST00000398729 TBC1D10BQ4KMP7 808 aaPredicted RBP17■□□□□ 0.31
VCX3A-202ENST00000398729 SLC4A10Q6U841 1118 aa17■□□□□ 0.31
VCX3A-202ENST00000398729 ANKRD18BA2A2Z9 1011 aa16.99■□□□□ 0.31
VCX3A-202ENST00000398729 GRM8O00222 908 aa16.99■□□□□ 0.31
VCX3A-202ENST00000398729 CCT4P50991 539 aaKnown RBP16.99■□□□□ 0.31
VCX3A-202ENST00000398729 RGMBQ6NW40 437 aa16.99■□□□□ 0.31
VCX3A-202ENST00000398729 C9orf78Q9NZ63 289 aaPredicted RBP16.99■□□□□ 0.31
VCX3A-202ENST00000398729 SCN9AQ15858 1988 aa16.98■□□□□ 0.31
VCX3A-202ENST00000398729 VIL1P09327 827 aaKnown RBP16.98■□□□□ 0.31
VCX3A-202ENST00000398729 FOXO4P98177 505 aa16.98■□□□□ 0.31
VCX3A-202ENST00000398729 KIF23Q02241 960 aaPredicted RBP16.98■□□□□ 0.31
VCX3A-202ENST00000398729 IFIT5Q13325 482 aaKnown RBP16.98■□□□□ 0.31
VCX3A-202ENST00000398729 KRT26Q7Z3Y9 468 aa16.98■□□□□ 0.31
VCX3A-202ENST00000398729 PODNQ7Z5L7 613 aa16.98■□□□□ 0.31
VCX3A-202ENST00000398729 SRCIN1Q9C0H9 1055 aa16.98■□□□□ 0.31
VCX3A-202ENST00000398729 ANKRD2Q9GZV1 360 aa16.98■□□□□ 0.31
VCX3A-202ENST00000398729 GBA2Q9HCG7 927 aaPredicted RBP16.98■□□□□ 0.31
VCX3A-202ENST00000398729 LEMD3Q9Y2U8 911 aa16.98■□□□□ 0.31
VCX3A-202ENST00000398729 CHMP3Q9Y3E7 222 aa16.98■□□□□ 0.31
VCX3A-202ENST00000398729 MED23Q9ULK4 1368 aa16.98■□□□□ 0.31
VCX3A-202ENST00000398729 ADM5C9JUS6 153 aa16.97■□□□□ 0.31
VCX3A-202ENST00000398729 RBM26Q5T8P6 1007 aaKnown RBP16.97■□□□□ 0.31
VCX3A-202ENST00000398729 MRPL50Q8N5N7 158 aaKnown RBP16.97■□□□□ 0.31
VCX3A-202ENST00000398729 RNF186Q9NXI6 227 aa16.97■□□□□ 0.31
VCX3A-202ENST00000398729 PTPRCP08575 1304 aa16.96■□□□□ 0.31
VCX3A-202ENST00000398729 TRPA1O75762 1119 aa16.96■□□□□ 0.31
VCX3A-202ENST00000398729 C2orf69Q8N8R5 385 aa16.96■□□□□ 0.31
VCX3A-202ENST00000398729 CDCA7LQ96GN5 454 aa16.96■□□□□ 0.31
VCX3A-202ENST00000398729 CSRNP1Q96S65 589 aa16.96■□□□□ 0.31
VCX3A-202ENST00000398729 PCDH10Q9P2E7 1040 aa16.96■□□□□ 0.31
VCX3A-202ENST00000398729 PSME4Q14997 1843 aa16.96■□□□□ 0.3
VCX3A-202ENST00000398729 USP17L3A6NCW0 530 aa16.95■□□□□ 0.3
VCX3A-202ENST00000398729 USP17L4A6NCW7 530 aa16.95■□□□□ 0.3
VCX3A-202ENST00000398729 WTIPA6NIX2 430 aaPredicted RBP16.95■□□□□ 0.3
VCX3A-202ENST00000398729 ZNF157P51786 506 aaPredicted RBP16.95■□□□□ 0.3
VCX3A-202ENST00000398729 CCDC57Q2TAC2 916 aa16.95■□□□□ 0.3
VCX3A-202ENST00000398729 RSBN1LQ6PCB5 846 aaPredicted RBP16.95■□□□□ 0.3
VCX3A-202ENST00000398729 LMBR1LQ6UX01 489 aa16.95■□□□□ 0.3
VCX3A-202ENST00000398729 USP17L1Q7RTZ2 530 aa16.95■□□□□ 0.3
VCX3A-202ENST00000398729 AGBL3Q8NEM8 1001 aa16.95■□□□□ 0.3
VCX3A-202ENST00000398729 SSH1Q8WYL5 1049 aa16.95■□□□□ 0.3
VCX3A-202ENST00000398729 CCDC102AQ96A19 550 aa16.95■□□□□ 0.3
VCX3A-202ENST00000398729 SAGE1Q9NXZ1 904 aa16.95■□□□□ 0.3
VCX3A-202ENST00000398729 ZNF609O15014 1411 aa16.95■□□□□ 0.3
VCX3A-202ENST00000398729 ZNF804BA4D1E1 1349 aa16.95■□□□□ 0.3
VCX3A-202ENST00000398729 ASTN2O75129 1339 aaPredicted RBP16.95■□□□□ 0.3
VCX3A-202ENST00000398729 KCNJ4P48050 445 aa16.94■□□□□ 0.3
VCX3A-202ENST00000398729 CHRNDQ07001 517 aa16.94■□□□□ 0.3
VCX3A-202ENST00000398729 EPHA10Q5JZY3 1008 aa16.94■□□□□ 0.3
VCX3A-202ENST00000398729 DCPSQ96C86 337 aaKnown RBP16.94■□□□□ 0.3
VCX3A-202ENST00000398729 COA1Q9GZY4 146 aa16.94■□□□□ 0.3
VCX3A-202ENST00000398729 KIF4BQ2VIQ3 1234 aa16.93■□□□□ 0.3
VCX3A-202ENST00000398729 ALDH1L2Q3SY69 923 aa16.93■□□□□ 0.3
VCX3A-202ENST00000398729 TAF7LQ5H9L4 462 aa16.93■□□□□ 0.3
VCX3A-202ENST00000398729 TRMT2AQ8IZ69 625 aaKnown RBP16.93■□□□□ 0.3
VCX3A-202ENST00000398729 SLC10A3P09131 477 aa16.92■□□□□ 0.3
VCX3A-202ENST00000398729 SOX10P56693 466 aa16.92■□□□□ 0.3
VCX3A-202ENST00000398729 TXNRD3Q86VQ6 643 aa16.92■□□□□ 0.3
VCX3A-202ENST00000398729 UTYO14607 1347 aa16.92■□□□□ 0.3
VCX3A-202ENST00000398729 CT47B1P0C2W7 299 aaPredicted RBP16.91■□□□□ 0.3
VCX3A-202ENST00000398729 NBPF7P0C2Y1 421 aaPredicted RBP16.91■□□□□ 0.3
VCX3A-202ENST00000398729 USP17L8P0C7I0 530 aa16.91■□□□□ 0.3
VCX3A-202ENST00000398729 ZNF280AP59817 542 aaPredicted RBP16.91■□□□□ 0.3
VCX3A-202ENST00000398729 LDHAL6AQ6ZMR3 332 aa16.91■□□□□ 0.3
VCX3A-202ENST00000398729 SUCLG2Q96I99 432 aa16.91■□□□□ 0.3
VCX3A-202ENST00000398729 GMLQ99445 158 aa16.91■□□□□ 0.3
VCX3A-202ENST00000398729 SMC4Q9NTJ3 1288 aa16.91■□□□□ 0.3
VCX3A-202ENST00000398729 TAF5LO75529 589 aa16.9■□□□□ 0.3
VCX3A-202ENST00000398729 KLRK1P26718 216 aa16.9■□□□□ 0.3
VCX3A-202ENST00000398729 STRIP1Q5VSL9 837 aa16.9■□□□□ 0.3
VCX3A-202ENST00000398729 FBXW7Q969H0 707 aa16.9■□□□□ 0.3
VCX3A-202ENST00000398729 ZNF594Q96JF6 807 aaPredicted RBP16.9■□□□□ 0.3
VCX3A-202ENST00000398729 CNNM1Q9NRU3 951 aa16.9■□□□□ 0.3
VCX3A-202ENST00000398729 MYO3BQ8WXR4 1341 aa16.9■□□□□ 0.3
VCX3A-202ENST00000398729 SCARF1Q14162 830 aa16.89■□□□□ 0.29
VCX3A-202ENST00000398729 DACT2Q5SW24 774 aa16.89■□□□□ 0.29
VCX3A-202ENST00000398729 HELBQ8NG08 1087 aaPredicted RBP16.89■□□□□ 0.29
VCX3A-202ENST00000398729 CDCA5Q96FF9 252 aa16.89■□□□□ 0.29
VCX3A-202ENST00000398729 GGA3Q9NZ52 723 aa16.89■□□□□ 0.29
VCX3A-202ENST00000398729 A0A1B0GUL6 1792 aa16.89■□□□□ 0.29
VCX3A-202ENST00000398729 TTLL5Q6EMB2 1281 aa16.88■□□□□ 0.29
VCX3A-202ENST00000398729 C15orf52Q6ZUT6 534 aaKnown RBP16.88■□□□□ 0.29
VCX3A-202ENST00000398729 SULF1Q8IWU6 871 aa16.88■□□□□ 0.29
VCX3A-202ENST00000398729 OGFOD1Q8N543 542 aa16.88■□□□□ 0.29
VCX3A-202ENST00000398729 KAZALD1Q96I82 304 aa16.88■□□□□ 0.29
VCX3A-202ENST00000398729 MYOZ2Q9NPC6 264 aa16.88■□□□□ 0.29
VCX3A-202ENST00000398729 SNAP23O00161 211 aa16.87■□□□□ 0.29
VCX3A-202ENST00000398729 PLIN1O60240 522 aa16.87■□□□□ 0.29
VCX3A-202ENST00000398729 ANGEL2Q5VTE6 544 aaKnown RBP16.87■□□□□ 0.29
VCX3A-202ENST00000398729 CTU1Q7Z7A3 348 aaKnown RBP16.87■□□□□ 0.29
VCX3A-202ENST00000398729 RASAL3Q86YV0 1011 aa16.87■□□□□ 0.29
VCX3A-202ENST00000398729 BICC1Q9H694 974 aaKnown RBP16.87■□□□□ 0.29
VCX3A-202ENST00000398729 CD209Q9NNX6 404 aa16.87■□□□□ 0.29
VCX3A-202ENST00000398729 ZNF646O15015 1829 aaPredicted RBP16.86■□□□□ 0.29
VCX3A-202ENST00000398729 AKAP11Q9UKA4 1901 aa16.86■□□□□ 0.29
Retrieved 100 of 20,778 RNA–protein pairs in 23.6 ms