RNA–Protein interactions for RNA: ENST00000397545.8

CCDC40-204, Transcript of coiled-coil domain containing 40, humanhuman

APPRIS P3 TSL 5 BASIC

Gene CCDC40, Length 4,294 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC40-204ENST00000397545 RDXP35241 583 aaKnown RBP12.43□□□□□ -0.42
CCDC40-204ENST00000397545 IGHMBP2P38935 993 aaKnown RBP12.43□□□□□ -0.42
CCDC40-204ENST00000397545 PKP1Q13835 747 aa12.43□□□□□ -0.42
CCDC40-204ENST00000397545 SLC4A8Q2Y0W8 1093 aa12.43□□□□□ -0.42
CCDC40-204ENST00000397545 SLC26A6Q9BXS9 759 aa12.43□□□□□ -0.42
CCDC40-204ENST00000397545 PODXL2Q9NZ53 605 aa12.43□□□□□ -0.42
CCDC40-204ENST00000397545 TMEM67Q5HYA8 995 aa12.43□□□□□ -0.42
CCDC40-204ENST00000397545 NUP88Q99567 741 aaPredicted RBP12.43□□□□□ -0.42
CCDC40-204ENST00000397545 DLG5Q8TDM6 1919 aa12.43□□□□□ -0.42
CCDC40-204ENST00000397545 GADD45BO75293 160 aaPredicted RBP12.42□□□□□ -0.42
CCDC40-204ENST00000397545 KIAA0754O94854 1291 aa12.42□□□□□ -0.42
CCDC40-204ENST00000397545 TAX1BP1Q86VP1 789 aa12.42□□□□□ -0.42
CCDC40-204ENST00000397545 GAS2L3Q86XJ1 694 aa12.42□□□□□ -0.42
CCDC40-204ENST00000397545 IP6K1Q92551 441 aa12.42□□□□□ -0.42
CCDC40-204ENST00000397545 GOLGA6L10A6NI86 522 aa12.42□□□□□ -0.42
CCDC40-204ENST00000397545 UBASH3AP57075 661 aa12.42□□□□□ -0.42
CCDC40-204ENST00000397545 HSP90AB3PQ58FF7 597 aa12.42□□□□□ -0.42
CCDC40-204ENST00000397545 CCDC102BQ68D86 513 aa12.42□□□□□ -0.42
CCDC40-204ENST00000397545 ZSCAN16Q9H4T2 348 aaPredicted RBP12.42□□□□□ -0.42
CCDC40-204ENST00000397545 SEPT11Q9NVA2 429 aaKnown RBP12.42□□□□□ -0.42
CCDC40-204ENST00000397545 HMG20BQ9P0W2 317 aa12.42□□□□□ -0.42
CCDC40-204ENST00000397545 CEP131Q9UPN4 1083 aa12.42□□□□□ -0.42
CCDC40-204ENST00000397545 SYKP43405 635 aa12.42□□□□□ -0.42
CCDC40-204ENST00000397545 MAP3K12Q12852 859 aa12.42□□□□□ -0.42
CCDC40-204ENST00000397545 CREB3L3Q68CJ9 461 aa12.42□□□□□ -0.42
CCDC40-204ENST00000397545 GCP02774 474 aa12.41□□□□□ -0.42
CCDC40-204ENST00000397545 METAP2P50579 478 aaKnown RBP eCLIP12.41□□□□□ -0.42
CCDC40-204ENST00000397545 SSRP1Q08945 709 aaKnown RBP12.41□□□□□ -0.42
CCDC40-204ENST00000397545 CCDC12Q8WUD4 166 aaPredicted RBP12.41□□□□□ -0.42
CCDC40-204ENST00000397545 TMEM63CQ9P1W3 806 aa12.41□□□□□ -0.42
CCDC40-204ENST00000397545 IQSEC3Q9UPP2 1182 aaPredicted RBP12.41□□□□□ -0.42
CCDC40-204ENST00000397545 SSH2Q76I76 1423 aa12.41□□□□□ -0.42
CCDC40-204ENST00000397545 CCDC196A0A1B0GTZ2 297 aa12.41□□□□□ -0.42
CCDC40-204ENST00000397545 LUC7LQ9NQ29 371 aaKnown RBP12.41□□□□□ -0.42
CCDC40-204ENST00000397545 KNDC1Q76NI1 1749 aa12.41□□□□□ -0.42
CCDC40-204ENST00000397545 LMTK3Q96Q04 1460 aa12.41□□□□□ -0.42
CCDC40-204ENST00000397545 LIG1P18858 919 aa12.41□□□□□ -0.42
CCDC40-204ENST00000397545 APOBRQ0VD83 1088 aa12.41□□□□□ -0.42
CCDC40-204ENST00000397545 CTCFLQ8NI51 663 aaPredicted RBP12.41□□□□□ -0.42
CCDC40-204ENST00000397545 INTS4Q96HW7 963 aaKnown RBP12.41□□□□□ -0.42
CCDC40-204ENST00000397545 LMBRD1Q9NUN5 540 aa12.41□□□□□ -0.42
CCDC40-204ENST00000397545 TMOD3Q9NYL9 352 aa12.41□□□□□ -0.42
CCDC40-204ENST00000397545 RIMS1Q86UR5 1692 aaKnown RBP12.41□□□□□ -0.42
CCDC40-204ENST00000397545 NPHP3Q7Z494 1330 aa12.41□□□□□ -0.42
CCDC40-204ENST00000397545 PEAK1Q9H792 1746 aa12.41□□□□□ -0.42
CCDC40-204ENST00000397545 AKAP12Q02952 1782 aa12.41□□□□□ -0.42
CCDC40-204ENST00000397545 KLHDC4Q8TBB5 520 aa12.4□□□□□ -0.42
CCDC40-204ENST00000397545 ANKRD24Q8TF21 1146 aa12.4□□□□□ -0.42
CCDC40-204ENST00000397545 PAXBP1Q9Y5B6 917 aa12.4□□□□□ -0.42
CCDC40-204ENST00000397545 AFMP43652 599 aa12.4□□□□□ -0.42
CCDC40-204ENST00000397545 KSR2Q6VAB6 950 aa12.4□□□□□ -0.42
CCDC40-204ENST00000397545 CCDC148Q8NFR7 591 aa12.4□□□□□ -0.42
CCDC40-204ENST00000397545 MRPS27Q92552 414 aaKnown RBP12.4□□□□□ -0.42
CCDC40-204ENST00000397545 BMP2KQ9NSY1 1161 aaPredicted RBP12.4□□□□□ -0.42
CCDC40-204ENST00000397545 SOS1Q07889 1333 aaPredicted RBP12.4□□□□□ -0.42
CCDC40-204ENST00000397545 LMAN1P49257 510 aa12.4□□□□□ -0.42
CCDC40-204ENST00000397545 NCOA7Q8NI08 942 aa12.4□□□□□ -0.42
CCDC40-204ENST00000397545 HS1BP3Q53T59 392 aa12.4□□□□□ -0.43
CCDC40-204ENST00000397545 ALG1Q9BT22 464 aa12.4□□□□□ -0.43
CCDC40-204ENST00000397545 MKNK2Q9HBH9 465 aa12.4□□□□□ -0.43
CCDC40-204ENST00000397545 CWC25Q9NXE8 425 aaPredicted RBP12.4□□□□□ -0.43
CCDC40-204ENST00000397545 CAVIN2O95810 425 aa12.39□□□□□ -0.43
CCDC40-204ENST00000397545 NLRP5P59047 1200 aa12.39□□□□□ -0.43
CCDC40-204ENST00000397545 MCM6Q14566 821 aa12.39□□□□□ -0.43
CCDC40-204ENST00000397545 SYCP1Q15431 976 aa12.39□□□□□ -0.43
CCDC40-204ENST00000397545 MCMDC2Q4G0Z9 681 aa12.39□□□□□ -0.43
CCDC40-204ENST00000397545 IQCA1Q86XH1 822 aa12.39□□□□□ -0.43
CCDC40-204ENST00000397545 RGS12O14924 1447 aa12.39□□□□□ -0.43
CCDC40-204ENST00000397545 KDRP35968 1356 aa12.39□□□□□ -0.43
CCDC40-204ENST00000397545 RXRAP19793 462 aa12.39□□□□□ -0.43
CCDC40-204ENST00000397545 MATR3P43243 847 aaKnown RBP eCLIP12.39□□□□□ -0.43
CCDC40-204ENST00000397545 SPA17Q15506 151 aa12.39□□□□□ -0.43
CCDC40-204ENST00000397545 C19orf44Q9H6X5 657 aa12.39□□□□□ -0.43
CCDC40-204ENST00000397545 ATP10DQ9P241 1426 aa12.39□□□□□ -0.43
CCDC40-204ENST00000397545 BMS1Q14692 1282 aaKnown RBP12.39□□□□□ -0.43
CCDC40-204ENST00000397545 ARHGAP23Q9P227 1491 aa12.39□□□□□ -0.43
CCDC40-204ENST00000397545 KIF24Q5T7B8 1368 aa12.38□□□□□ -0.43
CCDC40-204ENST00000397545 IDEP14735 1019 aa12.38□□□□□ -0.43
CCDC40-204ENST00000397545 ZSCAN29Q8IWY8 852 aaPredicted RBP12.38□□□□□ -0.43
CCDC40-204ENST00000397545 KRT222Q8N1A0 295 aa12.38□□□□□ -0.43
CCDC40-204ENST00000397545 CCDC191Q8NCU4 936 aa12.38□□□□□ -0.43
CCDC40-204ENST00000397545 KIF2CQ99661 725 aa12.38□□□□□ -0.43
CCDC40-204ENST00000397545 NDUFB9Q9Y6M9 179 aa12.38□□□□□ -0.43
CCDC40-204ENST00000397545 RGPD8O14715 1765 aaPredicted RBP12.38□□□□□ -0.43
CCDC40-204ENST00000397545 ANKRD18BA2A2Z9 1011 aa12.38□□□□□ -0.43
CCDC40-204ENST00000397545 N4BP3O15049 544 aa12.38□□□□□ -0.43
CCDC40-204ENST00000397545 SNRPA1P09661 255 aaKnown RBP12.38□□□□□ -0.43
CCDC40-204ENST00000397545 PLCD4Q9BRC7 762 aa12.38□□□□□ -0.43
CCDC40-204ENST00000397545 SF3B2Q13435 895 aaKnown RBP12.38□□□□□ -0.43
CCDC40-204ENST00000397545 CACNA2D4Q7Z3S7 1137 aa12.38□□□□□ -0.43
CCDC40-204ENST00000397545 IFNL2Q8IZJ0 200 aa12.38□□□□□ -0.43
CCDC40-204ENST00000397545 LINS1Q8NG48 757 aa12.38□□□□□ -0.43
CCDC40-204ENST00000397545 GBP3Q9H0R5 595 aa12.38□□□□□ -0.43
CCDC40-204ENST00000397545 SLIT1O75093 1534 aa12.38□□□□□ -0.43
CCDC40-204ENST00000397545 A0A1B0GVL5 298 aa12.37□□□□□ -0.43
CCDC40-204ENST00000397545 TDRD12Q587J7 1177 aaKnown RBP12.37□□□□□ -0.43
CCDC40-204ENST00000397545 IFNKQ9P0W0 207 aa12.37□□□□□ -0.43
CCDC40-204ENST00000397545 CCDC129Q6ZRS4 1044 aa12.37□□□□□ -0.43
CCDC40-204ENST00000397545 USP44Q9H0E7 712 aa12.37□□□□□ -0.43
CCDC40-204ENST00000397545 NEFHP12036 1026 aa12.37□□□□□ -0.43
Retrieved 100 of 20,778 RNA–protein pairs in 22.5 ms