RNA–Protein interactions for RNA: ENST00000396595.7

LIMCH1-203, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 1 (best) BASIC

Gene LIMCH1, Length 5,740 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-203ENST00000396595 CHPF2Q9P2E5 772 aa11.64□□□□□ -0.55
LIMCH1-203ENST00000396595 RASAL2Q9UJF2 1139 aa11.64□□□□□ -0.55
LIMCH1-203ENST00000396595 RAD50Q92878 1312 aa11.64□□□□□ -0.55
LIMCH1-203ENST00000396595 ATP2C2O75185 946 aa11.64□□□□□ -0.55
LIMCH1-203ENST00000396595 ATL3Q6DD88 541 aa11.64□□□□□ -0.55
LIMCH1-203ENST00000396595 ATRIPQ8WXE1 791 aa11.64□□□□□ -0.55
LIMCH1-203ENST00000396595 ATP2B3Q16720 1220 aa11.63□□□□□ -0.55
LIMCH1-203ENST00000396595 C16orf71Q8IYS4 520 aaPredicted RBP11.63□□□□□ -0.55
LIMCH1-203ENST00000396595 MYCBPQ99417 103 aaPredicted RBP11.63□□□□□ -0.55
LIMCH1-203ENST00000396595 STMN4Q9H169 189 aaPredicted RBP11.63□□□□□ -0.55
LIMCH1-203ENST00000396595 ZBTB40Q9NUA8 1239 aa11.63□□□□□ -0.55
LIMCH1-203ENST00000396595 PPP1R1BQ9UD71 204 aaPredicted RBP11.63□□□□□ -0.55
LIMCH1-203ENST00000396595 IGF2BP2Q9Y6M1 599 aaKnown RBP eCLIP11.63□□□□□ -0.55
LIMCH1-203ENST00000396595 ACEP12821 1306 aa11.63□□□□□ -0.55
LIMCH1-203ENST00000396595 NMIQ13287 307 aaPredicted RBP11.63□□□□□ -0.55
LIMCH1-203ENST00000396595 SF3B2Q13435 895 aaKnown RBP11.63□□□□□ -0.55
LIMCH1-203ENST00000396595 HSP90AA4PQ58FG1 418 aa11.63□□□□□ -0.55
LIMCH1-203ENST00000396595 CEP85Q6P2H3 762 aa11.63□□□□□ -0.55
LIMCH1-203ENST00000396595 KSR2Q6VAB6 950 aa11.63□□□□□ -0.55
LIMCH1-203ENST00000396595 BRAPQ7Z569 592 aa11.63□□□□□ -0.55
LIMCH1-203ENST00000396595 IKBKGQ9Y6K9 419 aa11.63□□□□□ -0.55
LIMCH1-203ENST00000396595 CLNS1AP54105 237 aaKnown RBP11.63□□□□□ -0.55
LIMCH1-203ENST00000396595 IFIT1BQ5T764 474 aaKnown RBP11.63□□□□□ -0.55
LIMCH1-203ENST00000396595 AP1ARQ63HQ0 302 aa11.63□□□□□ -0.55
LIMCH1-203ENST00000396595 RPGRQ92834 1020 aaKnown RBP11.63□□□□□ -0.55
LIMCH1-203ENST00000396595 FERMT2Q96AC1 680 aa11.63□□□□□ -0.55
LIMCH1-203ENST00000396595 CCDC174Q6PII3 467 aa11.63□□□□□ -0.55
LIMCH1-203ENST00000396595 ARFGAP2Q8N6H7 521 aa11.63□□□□□ -0.55
LIMCH1-203ENST00000396595 ZMAT2Q96NC0 199 aaKnown RBP11.63□□□□□ -0.55
LIMCH1-203ENST00000396595 CCDC77Q9BR77 488 aa11.63□□□□□ -0.55
LIMCH1-203ENST00000396595 EBAG9O00559 213 aa11.63□□□□□ -0.55
LIMCH1-203ENST00000396595 ZGPATQ8N5A5 531 aaKnown RBP11.63□□□□□ -0.55
LIMCH1-203ENST00000396595 CEP120Q8N960 986 aa11.63□□□□□ -0.55
LIMCH1-203ENST00000396595 PLEKHM2Q8IWE5 1019 aa11.62□□□□□ -0.55
LIMCH1-203ENST00000396595 LMBR1Q8WVP7 490 aa11.62□□□□□ -0.55
LIMCH1-203ENST00000396595 OGFRQ9NZT2 677 aa11.62□□□□□ -0.55
LIMCH1-203ENST00000396595 A0A1W2PRG0 241 aa11.62□□□□□ -0.55
LIMCH1-203ENST00000396595 HLA-DOAP06340 250 aa11.62□□□□□ -0.55
LIMCH1-203ENST00000396595 TRAF1Q13077 416 aa11.62□□□□□ -0.55
LIMCH1-203ENST00000396595 ZNF622Q969S3 477 aaKnown RBP eCLIP11.62□□□□□ -0.55
LIMCH1-203ENST00000396595 FERMT1Q9BQL6 677 aa11.62□□□□□ -0.55
LIMCH1-203ENST00000396595 FEZ2Q9UHY8 353 aaPredicted RBP11.62□□□□□ -0.55
LIMCH1-203ENST00000396595 RLBP1P12271 317 aa11.62□□□□□ -0.55
LIMCH1-203ENST00000396595 ASIC1P78348 528 aa11.62□□□□□ -0.55
LIMCH1-203ENST00000396595 CREB3L3Q68CJ9 461 aa11.62□□□□□ -0.55
LIMCH1-203ENST00000396595 USP37Q86T82 979 aa11.62□□□□□ -0.55
LIMCH1-203ENST00000396595 IFNKQ9P0W0 207 aa11.62□□□□□ -0.55
LIMCH1-203ENST00000396595 STX8Q9UNK0 236 aa11.62□□□□□ -0.55
LIMCH1-203ENST00000396595 PIK3C2GO75747 1445 aa11.62□□□□□ -0.55
LIMCH1-203ENST00000396595 GSTO1P78417 241 aa11.62□□□□□ -0.55
LIMCH1-203ENST00000396595 XAGE3Q8WTP9 111 aa11.62□□□□□ -0.55
LIMCH1-203ENST00000396595 CCDC42Q96M95 316 aa11.62□□□□□ -0.55
LIMCH1-203ENST00000396595 PSMD1Q99460 953 aa11.62□□□□□ -0.55
LIMCH1-203ENST00000396595 USP26Q9BXU7 913 aa11.62□□□□□ -0.55
LIMCH1-203ENST00000396595 CALML3P27482 149 aa11.61□□□□□ -0.55
LIMCH1-203ENST00000396595 NBPF11Q86T75 865 aa11.61□□□□□ -0.55
LIMCH1-203ENST00000396595 FMNL3Q8IVF7 1028 aa11.61□□□□□ -0.55
LIMCH1-203ENST00000396595 DHX58Q96C10 678 aa11.61□□□□□ -0.55
LIMCH1-203ENST00000396595 MAPKBP1O60336 1514 aa11.61□□□□□ -0.55
LIMCH1-203ENST00000396595 VAMP4O75379 141 aa11.61□□□□□ -0.55
LIMCH1-203ENST00000396595 LINS1Q8NG48 757 aa11.61□□□□□ -0.55
LIMCH1-203ENST00000396595 CHMLP26374 656 aa11.61□□□□□ -0.55
LIMCH1-203ENST00000396595 SYT10Q6XYQ8 523 aa11.61□□□□□ -0.55
LIMCH1-203ENST00000396595 CCDC129Q6ZRS4 1044 aa11.61□□□□□ -0.55
LIMCH1-203ENST00000396595 ARHGAP30Q7Z6I6 1101 aaPredicted RBP11.61□□□□□ -0.55
LIMCH1-203ENST00000396595 CABP5Q9NP86 173 aa11.61□□□□□ -0.55
LIMCH1-203ENST00000396595 SLC4A4Q9Y6R1 1079 aa11.61□□□□□ -0.55
LIMCH1-203ENST00000396595 BICDL2A1A5D9 508 aa11.61□□□□□ -0.55
LIMCH1-203ENST00000396595 CYP7A1P22680 504 aa11.61□□□□□ -0.55
LIMCH1-203ENST00000396595 PTPDC1A2A3K4 754 aa11.61□□□□□ -0.55
LIMCH1-203ENST00000396595 KIF4AO95239 1232 aa11.61□□□□□ -0.55
LIMCH1-203ENST00000396595 CALM1P0DP23 149 aa11.61□□□□□ -0.55
LIMCH1-203ENST00000396595 CALM2P0DP24 149 aa11.61□□□□□ -0.55
LIMCH1-203ENST00000396595 CALM3P0DP25 149 aa11.61□□□□□ -0.55
LIMCH1-203ENST00000396595 CCDC152Q4G0S7 254 aa11.61□□□□□ -0.55
LIMCH1-203ENST00000396595 LMBR1LQ6UX01 489 aa11.61□□□□□ -0.55
LIMCH1-203ENST00000396595 CCDC121Q6ZUS5 278 aa11.61□□□□□ -0.55
LIMCH1-203ENST00000396595 DHX32Q7L7V1 743 aaKnown RBP11.61□□□□□ -0.55
LIMCH1-203ENST00000396595 ANKS4BQ8N8V4 417 aa11.61□□□□□ -0.55
LIMCH1-203ENST00000396595 PPP1R14CQ8TAE6 165 aa11.61□□□□□ -0.55
LIMCH1-203ENST00000396595 TTC14Q96N46 770 aa11.61□□□□□ -0.55
LIMCH1-203ENST00000396595 PUS7Q96PZ0 661 aaKnown RBP11.61□□□□□ -0.55
LIMCH1-203ENST00000396595 MMRN2Q9H8L6 949 aa11.61□□□□□ -0.55
LIMCH1-203ENST00000396595 PAG1Q9NWQ8 432 aa11.61□□□□□ -0.55
LIMCH1-203ENST00000396595 FBXO31Q5XUX0 539 aaPredicted RBP11.6□□□□□ -0.55
LIMCH1-203ENST00000396595 RUFY3Q7L099 469 aa11.6□□□□□ -0.55
LIMCH1-203ENST00000396595 ERO1AQ96HE7 468 aa11.6□□□□□ -0.55
LIMCH1-203ENST00000396595 KRT13P13646 458 aa11.6□□□□□ -0.55
LIMCH1-203ENST00000396595 RFC1P35251 1148 aaPredicted RBP11.6□□□□□ -0.55
LIMCH1-203ENST00000396595 COPS6Q7L5N1 327 aa11.6□□□□□ -0.55
LIMCH1-203ENST00000396595 C6orf229H3BNL8 230 aa11.6□□□□□ -0.55
LIMCH1-203ENST00000396595 VAV2P52735 878 aa11.6□□□□□ -0.55
LIMCH1-203ENST00000396595 JARID2Q92833 1246 aaPredicted RBP11.6□□□□□ -0.55
LIMCH1-203ENST00000396595 SOS1Q07889 1333 aaPredicted RBP11.6□□□□□ -0.55
LIMCH1-203ENST00000396595 EXOC5O00471 708 aa11.6□□□□□ -0.55
LIMCH1-203ENST00000396595 CNGA4Q8IV77 575 aa11.6□□□□□ -0.55
LIMCH1-203ENST00000396595 OTUD6BQ8N6M0 293 aa11.6□□□□□ -0.55
LIMCH1-203ENST00000396595 TSNARE1Q96NA8 513 aa11.6□□□□□ -0.55
LIMCH1-203ENST00000396595 RTL9Q8NET4 1388 aa11.6□□□□□ -0.55
LIMCH1-203ENST00000396595 MYL5Q02045 173 aa11.59□□□□□ -0.55
Retrieved 100 of 20,778 RNA–protein pairs in 36.5 ms