RNA–Protein interactions for RNA: ENST00000395761.3

CXCL1-201, Transcript of C-X-C motif chemokine ligand 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CXCL1, Length 1,097 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CXCL1-201ENST00000395761 UBE4AQ14139 1066 aa20.59■□□□□ 0.89
CXCL1-201ENST00000395761 C15orf52Q6ZUT6 534 aaKnown RBP20.59■□□□□ 0.89
CXCL1-201ENST00000395761 SSH3Q8TE77 659 aa20.59■□□□□ 0.89
CXCL1-201ENST00000395761 L3MBTL3Q96JM7 780 aaPredicted RBP20.59■□□□□ 0.89
CXCL1-201ENST00000395761 FBXO3Q9UK99 471 aa20.59■□□□□ 0.89
CXCL1-201ENST00000395761 PSMD14O00487 310 aa20.58■□□□□ 0.89
CXCL1-201ENST00000395761 TNIP1Q15025 636 aa20.58■□□□□ 0.89
CXCL1-201ENST00000395761 CEP85Q6P2H3 762 aa20.58■□□□□ 0.89
CXCL1-201ENST00000395761 COA1Q9GZY4 146 aa20.58■□□□□ 0.89
CXCL1-201ENST00000395761 WDR90Q96KV7 1748 aa20.58■□□□□ 0.88
CXCL1-201ENST00000395761 IL15P40933 162 aaPredicted RBP20.57■□□□□ 0.88
CXCL1-201ENST00000395761 PODNQ7Z5L7 613 aa20.57■□□□□ 0.88
CXCL1-201ENST00000395761 SUPT16HQ9Y5B9 1047 aaKnown RBP20.57■□□□□ 0.88
CXCL1-201ENST00000395761 GMPSP49915 693 aaPredicted RBP20.56■□□□□ 0.88
CXCL1-201ENST00000395761 CD209Q9NNX6 404 aa20.56■□□□□ 0.88
CXCL1-201ENST00000395761 CEP126Q9P2H0 1117 aa20.56■□□□□ 0.88
CXCL1-201ENST00000395761 ZBTB12Q9Y330 459 aaPredicted RBP20.56■□□□□ 0.88
CXCL1-201ENST00000395761 SCN9AQ15858 1988 aa20.55■□□□□ 0.88
CXCL1-201ENST00000395761 FGFR2P21802 821 aa20.55■□□□□ 0.88
CXCL1-201ENST00000395761 GYG1P46976 350 aa20.55■□□□□ 0.88
CXCL1-201ENST00000395761 SCNN1DP51172 638 aa20.55■□□□□ 0.88
CXCL1-201ENST00000395761 FAM84BQ96KN1 310 aaPredicted RBP20.55■□□□□ 0.88
CXCL1-201ENST00000395761 CHMP4BQ9H444 224 aaKnown RBP20.55■□□□□ 0.88
CXCL1-201ENST00000395761 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP20.55■□□□□ 0.88
CXCL1-201ENST00000395761 EPS15P42566 896 aa20.54■□□□□ 0.88
CXCL1-201ENST00000395761 PUM3Q15397 648 aaKnown RBP20.54■□□□□ 0.88
CXCL1-201ENST00000395761 HACL1Q9UJ83 578 aa20.54■□□□□ 0.88
CXCL1-201ENST00000395761 IQCA1LA6NCM1 817 aa20.53■□□□□ 0.88
CXCL1-201ENST00000395761 USP17L3A6NCW0 530 aa20.53■□□□□ 0.88
CXCL1-201ENST00000395761 USP17L4A6NCW7 530 aa20.53■□□□□ 0.88
CXCL1-201ENST00000395761 VIL1P09327 827 aaKnown RBP20.53■□□□□ 0.88
CXCL1-201ENST00000395761 TFCP2Q12800 502 aa20.53■□□□□ 0.88
CXCL1-201ENST00000395761 G3BP1Q13283 466 aaKnown RBP eCLIP20.53■□□□□ 0.88
CXCL1-201ENST00000395761 USP17L1Q7RTZ2 530 aa20.53■□□□□ 0.88
CXCL1-201ENST00000395761 ZNF804AQ7Z570 1209 aa20.53■□□□□ 0.88
CXCL1-201ENST00000395761 SIRT2Q8IXJ6 389 aa20.53■□□□□ 0.88
CXCL1-201ENST00000395761 MXD3Q9BW11 206 aa20.53■□□□□ 0.88
CXCL1-201ENST00000395761 TAF1DQ9H5J8 278 aaPredicted RBP20.53■□□□□ 0.88
CXCL1-201ENST00000395761 SHTN1A0MZ66 631 aa20.52■□□□□ 0.88
CXCL1-201ENST00000395761 SURF6O75683 361 aaKnown RBP20.52■□□□□ 0.88
CXCL1-201ENST00000395761 IL1R1P14778 569 aa20.52■□□□□ 0.88
CXCL1-201ENST00000395761 HIBADHP31937 336 aaKnown RBP20.52■□□□□ 0.88
CXCL1-201ENST00000395761 FBXO33Q7Z6M2 555 aa20.52■□□□□ 0.88
CXCL1-201ENST00000395761 RPAP2Q8IXW5 612 aaPredicted RBP20.52■□□□□ 0.88
CXCL1-201ENST00000395761 LPIN2Q92539 896 aa20.52■□□□□ 0.88
CXCL1-201ENST00000395761 FBXW7Q969H0 707 aa20.52■□□□□ 0.88
CXCL1-201ENST00000395761 CRBNQ96SW2 442 aa20.52■□□□□ 0.88
CXCL1-201ENST00000395761 GPRC5DQ9NZD1 345 aa20.52■□□□□ 0.88
CXCL1-201ENST00000395761 SASH1O94885 1247 aa20.51■□□□□ 0.87
CXCL1-201ENST00000395761 IFIT1P09914 478 aaKnown RBP20.51■□□□□ 0.87
CXCL1-201ENST00000395761 SLC5A1P13866 664 aa20.51■□□□□ 0.87
CXCL1-201ENST00000395761 LMOD1P29536 600 aaPredicted RBP20.51■□□□□ 0.87
CXCL1-201ENST00000395761 EPHX2P34913 555 aa20.51■□□□□ 0.87
CXCL1-201ENST00000395761 BCAMP50895 628 aa20.51■□□□□ 0.87
CXCL1-201ENST00000395761 ATP2B3Q16720 1220 aa20.51■□□□□ 0.87
CXCL1-201ENST00000395761 DACT2Q5SW24 774 aa20.51■□□□□ 0.87
CXCL1-201ENST00000395761 POTEIP0CG38 1075 aa20.5■□□□□ 0.87
CXCL1-201ENST00000395761 POTEJP0CG39 1038 aa20.5■□□□□ 0.87
CXCL1-201ENST00000395761 GTF2IP78347 998 aa20.5■□□□□ 0.87
CXCL1-201ENST00000395761 TTLL5Q6EMB2 1281 aa20.5■□□□□ 0.87
CXCL1-201ENST00000395761 RSBN1LQ6PCB5 846 aaPredicted RBP20.5■□□□□ 0.87
CXCL1-201ENST00000395761 C16orf71Q8IYS4 520 aaPredicted RBP20.5■□□□□ 0.87
CXCL1-201ENST00000395761 TDRD7Q8NHU6 1098 aaKnown RBP20.5■□□□□ 0.87
CXCL1-201ENST00000395761 CNOT7Q9UIV1 285 aaKnown RBP20.5■□□□□ 0.87
CXCL1-201ENST00000395761 NOP58Q9Y2X3 529 aaKnown RBP20.5■□□□□ 0.87
CXCL1-201ENST00000395761 TOMM70O94826 608 aa20.49■□□□□ 0.87
CXCL1-201ENST00000395761 TIMM10P62072 90 aa20.49■□□□□ 0.87
CXCL1-201ENST00000395761 OS9Q13438 667 aaPredicted RBP20.49■□□□□ 0.87
CXCL1-201ENST00000395761 STRIP1Q5VSL9 837 aa20.49■□□□□ 0.87
CXCL1-201ENST00000395761 MICALL2Q8IY33 904 aa20.49■□□□□ 0.87
CXCL1-201ENST00000395761 DPF2Q92785 391 aa20.49■□□□□ 0.87
CXCL1-201ENST00000395761 GMLQ99445 158 aa20.49■□□□□ 0.87
CXCL1-201ENST00000395761 IQSEC3Q9UPP2 1182 aaPredicted RBP20.49■□□□□ 0.87
CXCL1-201ENST00000395761 JAG2Q9Y219 1238 aa20.49■□□□□ 0.87
CXCL1-201ENST00000395761 SCN4AP35499 1836 aa20.48■□□□□ 0.87
CXCL1-201ENST00000395761 RPS12P25398 132 aaKnown RBP20.48■□□□□ 0.87
CXCL1-201ENST00000395761 ADORA1P30542 326 aa20.48■□□□□ 0.87
CXCL1-201ENST00000395761 EAPPQ56P03 285 aaPredicted RBP20.48■□□□□ 0.87
CXCL1-201ENST00000395761 CAVIN4Q5BKX8 364 aa20.48■□□□□ 0.87
CXCL1-201ENST00000395761 VPS37DQ86XT2 251 aa20.48■□□□□ 0.87
CXCL1-201ENST00000395761 AGBL3Q8NEM8 1001 aa20.47■□□□□ 0.87
CXCL1-201ENST00000395761 EXOC6BQ9Y2D4 811 aa20.47■□□□□ 0.87
CXCL1-201ENST00000395761 A0A1B0GUL7 405 aa20.46■□□□□ 0.87
CXCL1-201ENST00000395761 HMMRO75330 724 aa20.46■□□□□ 0.87
CXCL1-201ENST00000395761 CERS5Q8N5B7 392 aa20.46■□□□□ 0.87
CXCL1-201ENST00000395761 RBM46Q8TBY0 533 aaKnown RBP20.46■□□□□ 0.87
CXCL1-201ENST00000395761 AKAP2Q9Y2D5 859 aa20.46■□□□□ 0.87
CXCL1-201ENST00000395761 PSME4Q14997 1843 aa20.46■□□□□ 0.87
CXCL1-201ENST00000395761 H7C1D1 291 aa20.45■□□□□ 0.86
CXCL1-201ENST00000395761 C1QTNF8P60827 252 aa20.45■□□□□ 0.86
CXCL1-201ENST00000395761 SAMD7Q7Z3H4 446 aa20.45■□□□□ 0.86
CXCL1-201ENST00000395761 PNMA8AQ86V59 439 aaPredicted RBP20.45■□□□□ 0.86
CXCL1-201ENST00000395761 NEUROD6Q96NK8 337 aa20.45■□□□□ 0.86
CXCL1-201ENST00000395761 ADARB2Q9NS39 739 aaKnown RBP20.45■□□□□ 0.86
CXCL1-201ENST00000395761 PCDHB15Q9Y5E8 787 aa20.45■□□□□ 0.86
CXCL1-201ENST00000395761 ZNF646O15015 1829 aaPredicted RBP20.45■□□□□ 0.86
CXCL1-201ENST00000395761 EGFRP00533 1210 aa20.44■□□□□ 0.86
CXCL1-201ENST00000395761 HIRAP54198 1017 aaPredicted RBP20.44■□□□□ 0.86
CXCL1-201ENST00000395761 TRPM4Q8TD43 1214 aa20.44■□□□□ 0.86
CXCL1-201ENST00000395761 XAGE2Q96GT9 111 aa20.44■□□□□ 0.86
Retrieved 100 of 20,778 RNA–protein pairs in 23.6 ms