RNA–Protein interactions for RNA: ENST00000395453.2

SCAF11-203, Transcript of SR-related CTD associated factor 11, humanhuman

APPRIS ALT2 TSL 2 BASIC

Gene SCAF11, Length 1,336 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCAF11-203ENST00000395453 PODXL2Q9NZ53 605 aa17.35■□□□□ 0.37
SCAF11-203ENST00000395453 ADM5C9JUS6 153 aa17.34■□□□□ 0.37
SCAF11-203ENST00000395453 MKRN4PQ13434 485 aaPredicted RBP17.34■□□□□ 0.37
SCAF11-203ENST00000395453 SALL2Q9Y467 1007 aaPredicted RBP17.34■□□□□ 0.37
SCAF11-203ENST00000395453 POLR2AP24928 1970 aaKnown RBP17.34■□□□□ 0.37
SCAF11-203ENST00000395453 NEURL1BA8MQ27 555 aa17.33■□□□□ 0.36
SCAF11-203ENST00000395453 EGFRP00533 1210 aa17.33■□□□□ 0.36
SCAF11-203ENST00000395453 NEXNQ0ZGT2 675 aa17.33■□□□□ 0.36
SCAF11-203ENST00000395453 PKN2Q16513 984 aaKnown RBP17.33■□□□□ 0.36
SCAF11-203ENST00000395453 RBM26Q5T8P6 1007 aaKnown RBP17.33■□□□□ 0.36
SCAF11-203ENST00000395453 SULF1Q8IWU6 871 aa17.33■□□□□ 0.36
SCAF11-203ENST00000395453 TBC1D16Q8TBP0 767 aa17.33■□□□□ 0.36
SCAF11-203ENST00000395453 DBNDD1Q9H9R9 158 aa17.33■□□□□ 0.36
SCAF11-203ENST00000395453 C6orf229H3BNL8 230 aa17.32■□□□□ 0.36
SCAF11-203ENST00000395453 H7C1W4 665 aa17.32■□□□□ 0.36
SCAF11-203ENST00000395453 FLIIQ13045 1269 aa17.32■□□□□ 0.36
SCAF11-203ENST00000395453 CWF19L2Q2TBE0 894 aaKnown RBP17.32■□□□□ 0.36
SCAF11-203ENST00000395453 TTLL11Q8NHH1 800 aa17.32■□□□□ 0.36
SCAF11-203ENST00000395453 HPS5Q9UPZ3 1129 aa17.32■□□□□ 0.36
SCAF11-203ENST00000395453 CTSWP56202 376 aa17.31■□□□□ 0.36
SCAF11-203ENST00000395453 EXOSC9Q06265 439 aaKnown RBP17.31■□□□□ 0.36
SCAF11-203ENST00000395453 KIF4BQ2VIQ3 1234 aa17.31■□□□□ 0.36
SCAF11-203ENST00000395453 EYA3Q99504 573 aa17.31■□□□□ 0.36
SCAF11-203ENST00000395453 RIMBP2O15034 1052 aa17.3■□□□□ 0.36
SCAF11-203ENST00000395453 FAM9BQ8IZU0 186 aa17.3■□□□□ 0.36
SCAF11-203ENST00000395453 GGA3Q9NZ52 723 aa17.3■□□□□ 0.36
SCAF11-203ENST00000395453 SSUH2Q9Y2M2 353 aa17.3■□□□□ 0.36
SCAF11-203ENST00000395453 RTL9Q8NET4 1388 aa17.29■□□□□ 0.36
SCAF11-203ENST00000395453 ECE2O60344 883 aa17.29■□□□□ 0.36
SCAF11-203ENST00000395453 GCKRQ14397 625 aa17.29■□□□□ 0.36
SCAF11-203ENST00000395453 RASAL3Q86YV0 1011 aa17.29■□□□□ 0.36
SCAF11-203ENST00000395453 ANKRD18AQ8IVF6 992 aa17.29■□□□□ 0.36
SCAF11-203ENST00000395453 CDCA5Q96FF9 252 aa17.29■□□□□ 0.36
SCAF11-203ENST00000395453 CCDC85AQ96PX6 553 aaPredicted RBP17.29■□□□□ 0.36
SCAF11-203ENST00000395453 ZC3H12CQ9C0D7 883 aaKnown RBP17.29■□□□□ 0.36
SCAF11-203ENST00000395453 KCNQ5Q9NR82 932 aa17.29■□□□□ 0.36
SCAF11-203ENST00000395453 ANKIB1Q9P2G1 1089 aa17.29■□□□□ 0.36
SCAF11-203ENST00000395453 HDAC9Q9UKV0 1011 aa17.29■□□□□ 0.36
SCAF11-203ENST00000395453 MYH3P11055 1940 aa17.29■□□□□ 0.36
SCAF11-203ENST00000395453 CASP7P55210 303 aa17.28■□□□□ 0.36
SCAF11-203ENST00000395453 FKBP1BP68106 108 aa17.28■□□□□ 0.36
SCAF11-203ENST00000395453 DOK7Q18PE1 504 aa17.28■□□□□ 0.36
SCAF11-203ENST00000395453 UBE3BQ7Z3V4 1068 aa17.28■□□□□ 0.36
SCAF11-203ENST00000395453 DNAAF4Q8WXU2 420 aa17.28■□□□□ 0.36
SCAF11-203ENST00000395453 GCC1Q96CN9 775 aa17.28■□□□□ 0.36
SCAF11-203ENST00000395453 PLA2G12BQ9BX93 195 aa17.28■□□□□ 0.36
SCAF11-203ENST00000395453 GGA1Q9UJY5 639 aa17.28■□□□□ 0.36
SCAF11-203ENST00000395453 UFL1O94874 794 aa17.27■□□□□ 0.36
SCAF11-203ENST00000395453 VIL1P09327 827 aaKnown RBP17.27■□□□□ 0.36
SCAF11-203ENST00000395453 FKBP5Q13451 457 aaPredicted RBP17.27■□□□□ 0.36
SCAF11-203ENST00000395453 LINS1Q8NG48 757 aa17.27■□□□□ 0.36
SCAF11-203ENST00000395453 CDC5LQ99459 802 aaKnown RBP17.27■□□□□ 0.36
SCAF11-203ENST00000395453 MYH16Q9H6N6 1097 aa17.27■□□□□ 0.36
SCAF11-203ENST00000395453 GREM2Q9H772 168 aa17.27■□□□□ 0.36
SCAF11-203ENST00000395453 BSDC1Q9NW68 430 aaPredicted RBP17.27■□□□□ 0.36
SCAF11-203ENST00000395453 SCN9AQ15858 1988 aa17.26■□□□□ 0.35
SCAF11-203ENST00000395453 MINPP1Q9UNW1 487 aa17.26■□□□□ 0.35
SCAF11-203ENST00000395453 XDHP47989 1333 aa17.26■□□□□ 0.35
SCAF11-203ENST00000395453 ZNF521Q96K83 1311 aa17.26■□□□□ 0.35
SCAF11-203ENST00000395453 CSF1RP07333 972 aa17.25■□□□□ 0.35
SCAF11-203ENST00000395453 ZNF296Q8WUU4 475 aaPredicted RBP17.25■□□□□ 0.35
SCAF11-203ENST00000395453 G3V3G9 751 aa17.24■□□□□ 0.35
SCAF11-203ENST00000395453 ATP2B4P23634 1241 aa17.24■□□□□ 0.35
SCAF11-203ENST00000395453 DCAF8Q5TAQ9 597 aa17.24■□□□□ 0.35
SCAF11-203ENST00000395453 ANGEL2Q5VTE6 544 aaKnown RBP17.24■□□□□ 0.35
SCAF11-203ENST00000395453 ASTN2O75129 1339 aaPredicted RBP17.24■□□□□ 0.35
SCAF11-203ENST00000395453 WTIPA6NIX2 430 aaPredicted RBP17.23■□□□□ 0.35
SCAF11-203ENST00000395453 TBC1D8O95759 1140 aa17.23■□□□□ 0.35
SCAF11-203ENST00000395453 ZNF280AP59817 542 aaPredicted RBP17.23■□□□□ 0.35
SCAF11-203ENST00000395453 SCARF1Q14162 830 aa17.23■□□□□ 0.35
SCAF11-203ENST00000395453 BEND3Q5T5X7 828 aa17.23■□□□□ 0.35
SCAF11-203ENST00000395453 ZNF609O15014 1411 aa17.23■□□□□ 0.35
SCAF11-203ENST00000395453 F6X3S4 739 aa17.22■□□□□ 0.35
SCAF11-203ENST00000395453 PRKAR2AP13861 404 aaKnown RBP17.22■□□□□ 0.35
SCAF11-203ENST00000395453 NOM1Q5C9Z4 860 aaKnown RBP17.22■□□□□ 0.35
SCAF11-203ENST00000395453 FBXO46Q6PJ61 603 aaPredicted RBP17.22■□□□□ 0.35
SCAF11-203ENST00000395453 AGBL3Q8NEM8 1001 aa17.22■□□□□ 0.35
SCAF11-203ENST00000395453 PAPPA2Q9BXP8 1791 aa17.22■□□□□ 0.35
SCAF11-203ENST00000395453 PSME4Q14997 1843 aa17.22■□□□□ 0.35
SCAF11-203ENST00000395453 ITGA6P23229 1130 aa17.21■□□□□ 0.35
SCAF11-203ENST00000395453 PODNQ7Z5L7 613 aa17.21■□□□□ 0.35
SCAF11-203ENST00000395453 PITPNM2Q9BZ72 1349 aa17.21■□□□□ 0.35
SCAF11-203ENST00000395453 GPR25O00155 361 aa17.21■□□□□ 0.34
SCAF11-203ENST00000395453 TM4SF4P48230 202 aa17.21■□□□□ 0.34
SCAF11-203ENST00000395453 CCT4P50991 539 aaKnown RBP17.21■□□□□ 0.34
SCAF11-203ENST00000395453 RSBN1LQ6PCB5 846 aaPredicted RBP17.21■□□□□ 0.34
SCAF11-203ENST00000395453 GMLQ99445 158 aa17.21■□□□□ 0.34
SCAF11-203ENST00000395453 SPEF2Q9C093 1822 aa17.2■□□□□ 0.34
SCAF11-203ENST00000395453 IGHMBP2P38935 993 aaKnown RBP17.2■□□□□ 0.34
SCAF11-203ENST00000395453 FOXO4P98177 505 aa17.2■□□□□ 0.34
SCAF11-203ENST00000395453 EVX2Q03828 476 aa17.2■□□□□ 0.34
SCAF11-203ENST00000395453 LEMD3Q9Y2U8 911 aa17.2■□□□□ 0.34
SCAF11-203ENST00000395453 MED23Q9ULK4 1368 aa17.19■□□□□ 0.34
SCAF11-203ENST00000395453 UBE2Q2LH0YL09 131 aa17.19■□□□□ 0.34
SCAF11-203ENST00000395453 USP17L8P0C7I0 530 aa17.19■□□□□ 0.34
SCAF11-203ENST00000395453 MYOZ2Q9NPC6 264 aa17.19■□□□□ 0.34
SCAF11-203ENST00000395453 MKI67P46013 3256 aaKnown RBP17.18■□□□□ 0.34
SCAF11-203ENST00000395453 USP17L3A6NCW0 530 aa17.18■□□□□ 0.34
SCAF11-203ENST00000395453 USP17L4A6NCW7 530 aa17.18■□□□□ 0.34
SCAF11-203ENST00000395453 MOB2Q70IA6 237 aa17.18■□□□□ 0.34
Retrieved 100 of 20,778 RNA–protein pairs in 13.1 ms