RNA–Protein interactions for RNA: ENST00000392004.7

COL6A3-205, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 1 (best) BASIC

Gene COL6A3, Length 4,037 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-205ENST00000392004 HDAC9Q9UKV0 1011 aa12.21□□□□□ -0.45
COL6A3-205ENST00000392004 TTF2Q9UNY4 1162 aaKnown RBP12.21□□□□□ -0.45
COL6A3-205ENST00000392004 ERVV-1B6SEH8 477 aa12.21□□□□□ -0.45
COL6A3-205ENST00000392004 SSFA2P28290 1259 aa12.21□□□□□ -0.45
COL6A3-205ENST00000392004 CHMP4BP1P59074 171 aa12.21□□□□□ -0.45
COL6A3-205ENST00000392004 SART3Q15020 963 aaKnown RBP12.21□□□□□ -0.45
COL6A3-205ENST00000392004 ZYXQ15942 572 aaKnown RBP12.21□□□□□ -0.45
COL6A3-205ENST00000392004 DDX11Q96FC9 970 aa12.21□□□□□ -0.45
COL6A3-205ENST00000392004 ESPNB1AK53 854 aa12.21□□□□□ -0.46
COL6A3-205ENST00000392004 HIP1O00291 1037 aa12.21□□□□□ -0.46
COL6A3-205ENST00000392004 CAMTA2O94983 1202 aa12.21□□□□□ -0.46
COL6A3-205ENST00000392004 NUCB1Q02818 461 aa12.21□□□□□ -0.46
COL6A3-205ENST00000392004 NKX1-1Q15270 411 aaPredicted RBP12.21□□□□□ -0.46
COL6A3-205ENST00000392004 ZNF444Q8N0Y2 327 aaPredicted RBP12.21□□□□□ -0.46
COL6A3-205ENST00000392004 CASTP20810 708 aaKnown RBP12.21□□□□□ -0.46
COL6A3-205ENST00000392004 TRMT1LQ7Z2T5 733 aaKnown RBP12.21□□□□□ -0.46
COL6A3-205ENST00000392004 GBP4Q96PP9 640 aa12.21□□□□□ -0.46
COL6A3-205ENST00000392004 FSD2A1L4K1 749 aa12.2□□□□□ -0.46
COL6A3-205ENST00000392004 ZNF213O14771 459 aa12.2□□□□□ -0.46
COL6A3-205ENST00000392004 LDHCP07864 332 aa12.2□□□□□ -0.46
COL6A3-205ENST00000392004 SLFNL1Q499Z3 407 aa12.2□□□□□ -0.46
COL6A3-205ENST00000392004 LPIN2Q92539 896 aa12.2□□□□□ -0.46
COL6A3-205ENST00000392004 EVI5LQ96CN4 794 aa12.2□□□□□ -0.46
COL6A3-205ENST00000392004 ARMT1Q9H993 441 aa12.2□□□□□ -0.46
COL6A3-205ENST00000392004 ZNF804BA4D1E1 1349 aa12.2□□□□□ -0.46
COL6A3-205ENST00000392004 ABCC4O15439 1325 aa12.2□□□□□ -0.46
COL6A3-205ENST00000392004 GYS1P13807 737 aa12.2□□□□□ -0.46
COL6A3-205ENST00000392004 HDAC1Q13547 482 aaPredicted RBP12.2□□□□□ -0.46
COL6A3-205ENST00000392004 IMMTQ16891 758 aaKnown RBP12.2□□□□□ -0.46
COL6A3-205ENST00000392004 BLOC1S2Q6QNY1 142 aa12.2□□□□□ -0.46
COL6A3-205ENST00000392004 MAP2P11137 1827 aaKnown RBP12.19□□□□□ -0.46
COL6A3-205ENST00000392004 MBD4O95243 580 aa12.19□□□□□ -0.46
COL6A3-205ENST00000392004 CEBPZQ03701 1054 aaKnown RBP12.19□□□□□ -0.46
COL6A3-205ENST00000392004 SF3A1Q15459 793 aaKnown RBP12.19□□□□□ -0.46
COL6A3-205ENST00000392004 CCDC102BQ68D86 513 aa12.19□□□□□ -0.46
COL6A3-205ENST00000392004 CLEC4GQ6UXB4 293 aa12.19□□□□□ -0.46
COL6A3-205ENST00000392004 TSPY2A6NKD2 308 aa12.19□□□□□ -0.46
COL6A3-205ENST00000392004 CACNB3P54284 484 aa12.19□□□□□ -0.46
COL6A3-205ENST00000392004 NMIQ13287 307 aaPredicted RBP12.19□□□□□ -0.46
COL6A3-205ENST00000392004 PDIA6Q15084 440 aa12.19□□□□□ -0.46
COL6A3-205ENST00000392004 MAPKAPK5Q8IW41 473 aa12.19□□□□□ -0.46
COL6A3-205ENST00000392004 FAM227BQ96M60 508 aa12.19□□□□□ -0.46
COL6A3-205ENST00000392004 SEC62Q99442 399 aaKnown RBP12.19□□□□□ -0.46
COL6A3-205ENST00000392004 PDE8BO95263 885 aa12.19□□□□□ -0.46
COL6A3-205ENST00000392004 DPEP1P16444 411 aa12.19□□□□□ -0.46
COL6A3-205ENST00000392004 PTMSP20962 102 aa12.19□□□□□ -0.46
COL6A3-205ENST00000392004 AOC3Q16853 763 aa12.19□□□□□ -0.46
COL6A3-205ENST00000392004 ZKSCAN3Q9BRR0 538 aa12.19□□□□□ -0.46
COL6A3-205ENST00000392004 KDM6AO15550 1401 aaPredicted RBP12.18□□□□□ -0.46
COL6A3-205ENST00000392004 TTC22Q5TAA0 569 aa12.18□□□□□ -0.46
COL6A3-205ENST00000392004 SPTY2D1Q68D10 685 aaPredicted RBP12.18□□□□□ -0.46
COL6A3-205ENST00000392004 DPY19L2Q6NUT2 758 aa12.18□□□□□ -0.46
COL6A3-205ENST00000392004 PLEKHM2Q8IWE5 1019 aa12.18□□□□□ -0.46
COL6A3-205ENST00000392004 RNF181Q9P0P0 153 aa12.18□□□□□ -0.46
COL6A3-205ENST00000392004 CCT2P78371 535 aaKnown RBP12.18□□□□□ -0.46
COL6A3-205ENST00000392004 DIXDC1Q155Q3 683 aa12.18□□□□□ -0.46
COL6A3-205ENST00000392004 CCDC96Q2M329 555 aa12.18□□□□□ -0.46
COL6A3-205ENST00000392004 TEX11Q8IYF3 940 aa12.18□□□□□ -0.46
COL6A3-205ENST00000392004 TCP10L2B9ZVM9 353 aa12.18□□□□□ -0.46
COL6A3-205ENST00000392004 KIAA1210Q9ULL0 1709 aa12.18□□□□□ -0.46
COL6A3-205ENST00000392004 CPA1P15085 419 aa12.17□□□□□ -0.46
COL6A3-205ENST00000392004 PTPN12Q05209 780 aaKnown RBP12.17□□□□□ -0.46
COL6A3-205ENST00000392004 CREBRFQ8IUR6 639 aa12.17□□□□□ -0.46
COL6A3-205ENST00000392004 ZMYND15Q9H091 742 aa12.17□□□□□ -0.46
COL6A3-205ENST00000392004 CYP46A1Q9Y6A2 500 aa12.17□□□□□ -0.46
COL6A3-205ENST00000392004 MAGEB6P1A0A0J9YX57 407 aa12.17□□□□□ -0.46
COL6A3-205ENST00000392004 TRIM29Q14134 588 aa12.17□□□□□ -0.46
COL6A3-205ENST00000392004 TTF1Q15361 905 aaPredicted RBP12.17□□□□□ -0.46
COL6A3-205ENST00000392004 SKOR2Q2VWA4 1001 aaPredicted RBP12.17□□□□□ -0.46
COL6A3-205ENST00000392004 MASTLQ96GX5 879 aa12.17□□□□□ -0.46
COL6A3-205ENST00000392004 SMC3Q9UQE7 1217 aa12.17□□□□□ -0.46
COL6A3-205ENST00000392004 RGPD8O14715 1765 aaPredicted RBP12.17□□□□□ -0.46
COL6A3-205ENST00000392004 CCDC69A6NI79 296 aa12.17□□□□□ -0.46
COL6A3-205ENST00000392004 SPATA5Q8NB90 893 aa12.17□□□□□ -0.46
COL6A3-205ENST00000392004 ADRA2BP18089 450 aa12.16□□□□□ -0.46
COL6A3-205ENST00000392004 SLF2Q8IX21 1173 aa12.16□□□□□ -0.46
COL6A3-205ENST00000392004 CRNKL1Q9BZJ0 848 aaKnown RBP12.16□□□□□ -0.46
COL6A3-205ENST00000392004 DBNLQ9UJU6 430 aaKnown RBP12.16□□□□□ -0.46
COL6A3-205ENST00000392004 NRXN3Q9Y4C0 1643 aa12.16□□□□□ -0.46
COL6A3-205ENST00000392004 H7C1W4 665 aa12.16□□□□□ -0.46
COL6A3-205ENST00000392004 NPR1P16066 1061 aa12.16□□□□□ -0.46
COL6A3-205ENST00000392004 DLGAP5Q15398 846 aa12.16□□□□□ -0.46
COL6A3-205ENST00000392004 SIRT2Q8IXJ6 389 aa12.16□□□□□ -0.46
COL6A3-205ENST00000392004 SSH3Q8TE77 659 aa12.16□□□□□ -0.46
COL6A3-205ENST00000392004 ADCY9O60503 1353 aa12.16□□□□□ -0.46
COL6A3-205ENST00000392004 IFIT3O14879 490 aaKnown RBP12.16□□□□□ -0.46
COL6A3-205ENST00000392004 TPM2P07951 284 aa12.16□□□□□ -0.46
COL6A3-205ENST00000392004 RXRAP19793 462 aa12.16□□□□□ -0.46
COL6A3-205ENST00000392004 PSMA5P28066 241 aa12.16□□□□□ -0.46
COL6A3-205ENST00000392004 GUCY1B3Q02153 619 aa12.16□□□□□ -0.46
COL6A3-205ENST00000392004 MKRN3Q13064 507 aaKnown RBP12.16□□□□□ -0.46
COL6A3-205ENST00000392004 RAB3GAP1Q15042 981 aa12.16□□□□□ -0.46
COL6A3-205ENST00000392004 MICU3Q86XE3 530 aa12.16□□□□□ -0.46
COL6A3-205ENST00000392004 HOMER1Q86YM7 354 aa12.16□□□□□ -0.46
COL6A3-205ENST00000392004 CTNNA3Q9UI47 895 aa12.16□□□□□ -0.46
COL6A3-205ENST00000392004 ZBTB12Q9Y330 459 aaPredicted RBP12.16□□□□□ -0.46
COL6A3-205ENST00000392004 USP42Q9H9J4 1324 aaKnown RBP12.16□□□□□ -0.46
COL6A3-205ENST00000392004 GRAPQ13588 217 aa12.15□□□□□ -0.46
COL6A3-205ENST00000392004 GRAPLQ8TC17 118 aaPredicted RBP12.15□□□□□ -0.46
COL6A3-205ENST00000392004 TGFBRAP1Q8WUH2 860 aa12.15□□□□□ -0.46
Retrieved 100 of 20,778 RNA–protein pairs in 122 ms