RNA–Protein interactions for RNA: ENST00000392003.6

COL6A3-204, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 2 BASIC

Gene COL6A3, Length 3,464 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-204ENST00000392003 JCADQ9P266 1359 aa11.37□□□□□ -0.59
COL6A3-204ENST00000392003 TCHHQ07283 1943 aa11.37□□□□□ -0.59
COL6A3-204ENST00000392003 FAM177BA6PVY3 158 aa11.37□□□□□ -0.59
COL6A3-204ENST00000392003 ST3GAL1Q11201 340 aa11.37□□□□□ -0.59
COL6A3-204ENST00000392003 LRRC24Q50LG9 513 aa11.37□□□□□ -0.59
COL6A3-204ENST00000392003 SCAND2PQ9GZW5 306 aaPredicted RBP11.37□□□□□ -0.59
COL6A3-204ENST00000392003 MPNDQ8N594 471 aa11.36□□□□□ -0.59
COL6A3-204ENST00000392003 DSCC1Q9BVC3 393 aa11.36□□□□□ -0.59
COL6A3-204ENST00000392003 TAF6LQ9Y6J9 622 aa11.36□□□□□ -0.59
COL6A3-204ENST00000392003 PALLDQ8WX93 1383 aa11.36□□□□□ -0.59
COL6A3-204ENST00000392003 RNF113AO15541 343 aaKnown RBP11.36□□□□□ -0.59
COL6A3-204ENST00000392003 CYP21A2P08686 494 aa11.36□□□□□ -0.59
COL6A3-204ENST00000392003 MMP14P50281 582 aa11.36□□□□□ -0.59
COL6A3-204ENST00000392003 FKBP4Q02790 459 aaKnown RBP eCLIP11.36□□□□□ -0.59
COL6A3-204ENST00000392003 C8orf37Q96NL8 207 aa11.36□□□□□ -0.59
COL6A3-204ENST00000392003 ISCA1Q9BUE6 129 aa11.36□□□□□ -0.59
COL6A3-204ENST00000392003 FBXO3Q9UK99 471 aa11.36□□□□□ -0.59
COL6A3-204ENST00000392003 IFIT5Q13325 482 aaKnown RBP11.36□□□□□ -0.59
COL6A3-204ENST00000392003 CDC37L1Q7L3B6 337 aa11.36□□□□□ -0.59
COL6A3-204ENST00000392003 FAM89AQ96GI7 184 aa11.36□□□□□ -0.59
COL6A3-204ENST00000392003 TBC1D2BQ9UPU7 963 aa11.36□□□□□ -0.59
COL6A3-204ENST00000392003 CBX1P83916 185 aa11.35□□□□□ -0.59
COL6A3-204ENST00000392003 ZMYM1Q5SVZ6 1142 aa11.35□□□□□ -0.59
COL6A3-204ENST00000392003 DHX32Q7L7V1 743 aaKnown RBP11.35□□□□□ -0.59
COL6A3-204ENST00000392003 BRF1Q92994 677 aa11.35□□□□□ -0.59
COL6A3-204ENST00000392003 GTF3C6Q969F1 213 aa11.35□□□□□ -0.59
COL6A3-204ENST00000392003 SPATA32Q96LK8 384 aa11.35□□□□□ -0.59
COL6A3-204ENST00000392003 NOL7Q9UMY1 257 aaKnown RBP11.35□□□□□ -0.59
COL6A3-204ENST00000392003 MCM5P33992 734 aa11.35□□□□□ -0.59
COL6A3-204ENST00000392003 WASHC4Q2M389 1173 aa11.35□□□□□ -0.59
COL6A3-204ENST00000392003 HSP90AB3PQ58FF7 597 aa11.35□□□□□ -0.59
COL6A3-204ENST00000392003 TRMT112Q9UI30 125 aaKnown RBP11.35□□□□□ -0.59
COL6A3-204ENST00000392003 PCCAP05165 728 aaPredicted RBP11.34□□□□□ -0.59
COL6A3-204ENST00000392003 PDZRN4Q6ZMN7 1036 aaPredicted RBP11.34□□□□□ -0.59
COL6A3-204ENST00000392003 CTNNA3Q9UI47 895 aa11.34□□□□□ -0.59
COL6A3-204ENST00000392003 ATP6V1AP38606 617 aa11.34□□□□□ -0.59
COL6A3-204ENST00000392003 PLCB2Q00722 1185 aa11.34□□□□□ -0.59
COL6A3-204ENST00000392003 TRIM28Q13263 835 aaKnown RBP11.34□□□□□ -0.59
COL6A3-204ENST00000392003 PPIL4Q8WUA2 492 aaKnown RBP eCLIP11.34□□□□□ -0.59
COL6A3-204ENST00000392003 PUS3Q9BZE2 481 aaKnown RBP11.34□□□□□ -0.59
COL6A3-204ENST00000392003 KCPQ6ZWJ8 1503 aa11.34□□□□□ -0.59
COL6A3-204ENST00000392003 KIF20AO95235 890 aa11.34□□□□□ -0.59
COL6A3-204ENST00000392003 ZFYP08048 801 aaPredicted RBP11.34□□□□□ -0.59
COL6A3-204ENST00000392003 CCDC192P0DO97 292 aa11.34□□□□□ -0.59
COL6A3-204ENST00000392003 HCLS1P14317 486 aaPredicted RBP11.34□□□□□ -0.59
COL6A3-204ENST00000392003 GIMAP6Q6P9H5 292 aa11.34□□□□□ -0.59
COL6A3-204ENST00000392003 GTF3C5Q9Y5Q8 519 aaPredicted RBP11.34□□□□□ -0.59
COL6A3-204ENST00000392003 CHGBP05060 677 aa11.33□□□□□ -0.6
COL6A3-204ENST00000392003 HMGN5P82970 282 aaKnown RBP11.33□□□□□ -0.6
COL6A3-204ENST00000392003 DZIP3Q86Y13 1208 aaKnown RBP11.33□□□□□ -0.6
COL6A3-204ENST00000392003 DDX11Q96FC9 970 aa11.33□□□□□ -0.6
COL6A3-204ENST00000392003 LRRC2Q9BYS8 371 aa11.33□□□□□ -0.6
COL6A3-204ENST00000392003 NUP62CLQ9H1M0 184 aa11.33□□□□□ -0.6
COL6A3-204ENST00000392003 ZKSCAN5Q9Y2L8 839 aa11.33□□□□□ -0.6
COL6A3-204ENST00000392003 TTC6Q86TZ1 520 aa11.33□□□□□ -0.6
COL6A3-204ENST00000392003 ZNF592Q92610 1267 aa11.33□□□□□ -0.6
COL6A3-204ENST00000392003 MAP7D2Q96T17 732 aa11.33□□□□□ -0.6
COL6A3-204ENST00000392003 LLPHQ9BRT6 129 aaKnown RBP11.33□□□□□ -0.6
COL6A3-204ENST00000392003 ZSCAN16Q9H4T2 348 aaPredicted RBP11.33□□□□□ -0.6
COL6A3-204ENST00000392003 TFIP11Q9UBB9 837 aaKnown RBP11.33□□□□□ -0.6
COL6A3-204ENST00000392003 ZBTB1Q9Y2K1 713 aa11.33□□□□□ -0.6
COL6A3-204ENST00000392003 R3HCC1Q9Y3T6 440 aaKnown RBP11.33□□□□□ -0.6
COL6A3-204ENST00000392003 ELP1O95163 1332 aa11.33□□□□□ -0.6
COL6A3-204ENST00000392003 METTL24Q5JXM2 366 aa11.33□□□□□ -0.6
COL6A3-204ENST00000392003 FAM173BQ6P4H8 233 aa11.33□□□□□ -0.6
COL6A3-204ENST00000392003 ZBTB38Q8NAP3 1195 aaPredicted RBP11.33□□□□□ -0.6
COL6A3-204ENST00000392003 XAGE2Q96GT9 111 aa11.33□□□□□ -0.6
COL6A3-204ENST00000392003 CNNM1Q9NRU3 951 aa11.33□□□□□ -0.6
COL6A3-204ENST00000392003 TNS2Q63HR2 1409 aa11.33□□□□□ -0.6
COL6A3-204ENST00000392003 JAK2O60674 1132 aa11.32□□□□□ -0.6
COL6A3-204ENST00000392003 HSPD1P10809 573 aaKnown RBP11.32□□□□□ -0.6
COL6A3-204ENST00000392003 COL9A3Q14050 684 aaPredicted RBP11.32□□□□□ -0.6
COL6A3-204ENST00000392003 MAP3K11Q16584 847 aa11.32□□□□□ -0.6
COL6A3-204ENST00000392003 FAM98CQ17RN3 349 aaKnown RBP11.32□□□□□ -0.6
COL6A3-204ENST00000392003 MEX3CQ5U5Q3 659 aaKnown RBP11.32□□□□□ -0.6
COL6A3-204ENST00000392003 BICD2Q8TD16 824 aa11.32□□□□□ -0.6
COL6A3-204ENST00000392003 CFAP45Q9UL16 551 aa11.32□□□□□ -0.6
COL6A3-204ENST00000392003 USP25Q9UHP3 1055 aa11.32□□□□□ -0.6
COL6A3-204ENST00000392003 GLI3P10071 1580 aa11.32□□□□□ -0.6
COL6A3-204ENST00000392003 MAST3O60307 1309 aa11.32□□□□□ -0.6
COL6A3-204ENST00000392003 MAP3K15Q6ZN16 1313 aa11.32□□□□□ -0.6
COL6A3-204ENST00000392003 CLGNO14967 610 aa11.32□□□□□ -0.6
COL6A3-204ENST00000392003 PFKFB2O60825 505 aa11.32□□□□□ -0.6
COL6A3-204ENST00000392003 IMMTQ16891 758 aaKnown RBP11.32□□□□□ -0.6
COL6A3-204ENST00000392003 DDX24Q9GZR7 859 aaKnown RBP eCLIP11.32□□□□□ -0.6
COL6A3-204ENST00000392003 XIRP1Q702N8 1843 aaKnown RBP11.31□□□□□ -0.6
COL6A3-204ENST00000392003 ANKRD18BA2A2Z9 1011 aa11.31□□□□□ -0.6
COL6A3-204ENST00000392003 KIAA2012Q0VF49 1180 aa11.31□□□□□ -0.6
COL6A3-204ENST00000392003 ATP2B3Q16720 1220 aa11.31□□□□□ -0.6
COL6A3-204ENST00000392003 GIGYF2Q6Y7W6 1299 aaKnown RBP11.31□□□□□ -0.6
COL6A3-204ENST00000392003 LDHAL6AQ6ZMR3 332 aa11.31□□□□□ -0.6
COL6A3-204ENST00000392003 TNMDQ9H2S6 317 aa11.31□□□□□ -0.6
COL6A3-204ENST00000392003 DDX19AQ9NUU7 478 aaKnown RBP11.31□□□□□ -0.6
COL6A3-204ENST00000392003 UBR2Q8IWV8 1755 aa11.31□□□□□ -0.6
COL6A3-204ENST00000392003 E7EWF7 191 aa11.31□□□□□ -0.6
COL6A3-204ENST00000392003 APOBRQ0VD83 1088 aa11.31□□□□□ -0.6
COL6A3-204ENST00000392003 PLA2G12BQ9BX93 195 aa11.31□□□□□ -0.6
COL6A3-204ENST00000392003 THRAP3Q9Y2W1 955 aaKnown RBP11.31□□□□□ -0.6
COL6A3-204ENST00000392003 SPATA31A1Q5TZJ5 1347 aa11.31□□□□□ -0.6
COL6A3-204ENST00000392003 OFD1O75665 1012 aa11.3□□□□□ -0.6
Retrieved 100 of 20,778 RNA–protein pairs in 49.3 ms