RNA–Protein interactions for RNA: ENST00000379826.4

SMAD9-202, Transcript of SMAD family member 9, humanhuman

APPRIS ALT1 TSL 5 BASIC

Gene SMAD9, Length 5,592 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMAD9-202ENST00000379826 C19orf44Q9H6X5 657 aa13.18□□□□□ -0.3
SMAD9-202ENST00000379826 TNNI3KQ59H18 835 aa13.18□□□□□ -0.3
SMAD9-202ENST00000379826 FPGT-TNNI3KV9GXZ4 949 aa13.18□□□□□ -0.3
SMAD9-202ENST00000379826 PLEKHG3A1L390 1219 aa13.18□□□□□ -0.3
SMAD9-202ENST00000379826 APBA3O96018 575 aa13.18□□□□□ -0.3
SMAD9-202ENST00000379826 ATP2B3Q16720 1220 aa13.18□□□□□ -0.3
SMAD9-202ENST00000379826 CAVIN2O95810 425 aa13.17□□□□□ -0.3
SMAD9-202ENST00000379826 UBASH3AP57075 661 aa13.17□□□□□ -0.3
SMAD9-202ENST00000379826 MICU3Q86XE3 530 aa13.17□□□□□ -0.3
SMAD9-202ENST00000379826 CPS1P31327 1500 aa13.17□□□□□ -0.3
SMAD9-202ENST00000379826 CD163L1Q9NR16 1453 aa13.17□□□□□ -0.3
SMAD9-202ENST00000379826 LTKP29376 864 aa13.17□□□□□ -0.3
SMAD9-202ENST00000379826 KIAA1524Q8TCG1 905 aa13.17□□□□□ -0.3
SMAD9-202ENST00000379826 KIF20BQ96Q89 1820 aa13.17□□□□□ -0.3
SMAD9-202ENST00000379826 CDKL5O76039 1030 aa13.17□□□□□ -0.3
SMAD9-202ENST00000379826 DHX32Q7L7V1 743 aaKnown RBP13.17□□□□□ -0.3
SMAD9-202ENST00000379826 ANKRD20A12PQ8NF67 263 aa13.17□□□□□ -0.3
SMAD9-202ENST00000379826 USP6P35125 1406 aa13.17□□□□□ -0.3
SMAD9-202ENST00000379826 SAMD1Q6SPF0 538 aaPredicted RBP13.16□□□□□ -0.3
SMAD9-202ENST00000379826 TM6SF1Q9BZW5 370 aa13.16□□□□□ -0.3
SMAD9-202ENST00000379826 DMTNQ08495 405 aa13.16□□□□□ -0.3
SMAD9-202ENST00000379826 METTL24Q5JXM2 366 aa13.16□□□□□ -0.3
SMAD9-202ENST00000379826 C11orf57Q6ZUT1 292 aaPredicted RBP13.16□□□□□ -0.3
SMAD9-202ENST00000379826 TMEM87AQ8NBN3 555 aa13.16□□□□□ -0.3
SMAD9-202ENST00000379826 IP6K1Q92551 441 aa13.16□□□□□ -0.3
SMAD9-202ENST00000379826 TTC14Q96N46 770 aa13.16□□□□□ -0.3
SMAD9-202ENST00000379826 ZSCAN12O43309 604 aa13.16□□□□□ -0.3
SMAD9-202ENST00000379826 FAM160A1Q05DH4 1040 aa13.16□□□□□ -0.3
SMAD9-202ENST00000379826 HSP90B2PQ58FF3 399 aa13.16□□□□□ -0.3
SMAD9-202ENST00000379826 IGSF1Q8N6C5 1336 aa13.16□□□□□ -0.3
SMAD9-202ENST00000379826 KCNA6P17658 529 aa13.16□□□□□ -0.3
SMAD9-202ENST00000379826 SYKP43405 635 aa13.16□□□□□ -0.3
SMAD9-202ENST00000379826 MROH1Q8NDA8 1641 aa13.15□□□□□ -0.3
SMAD9-202ENST00000379826 POLA2Q14181 598 aa13.15□□□□□ -0.3
SMAD9-202ENST00000379826 SART3Q15020 963 aaKnown RBP13.15□□□□□ -0.3
SMAD9-202ENST00000379826 CAGE1Q8TC20 777 aa13.15□□□□□ -0.3
SMAD9-202ENST00000379826 KCNF1Q9H3M0 494 aa13.15□□□□□ -0.3
SMAD9-202ENST00000379826 REREQ9P2R6 1566 aa13.15□□□□□ -0.3
SMAD9-202ENST00000379826 SPTLC2O15270 562 aa13.15□□□□□ -0.3
SMAD9-202ENST00000379826 TIMM10P62072 90 aa13.15□□□□□ -0.3
SMAD9-202ENST00000379826 FEZ1Q99689 392 aa13.15□□□□□ -0.3
SMAD9-202ENST00000379826 EPB41L2O43491 1005 aaKnown RBP13.15□□□□□ -0.3
SMAD9-202ENST00000379826 AIDAQ96BJ3 306 aa13.15□□□□□ -0.3
SMAD9-202ENST00000379826 PRC1O43663 620 aa13.15□□□□□ -0.3
SMAD9-202ENST00000379826 BMS1Q14692 1282 aaKnown RBP13.15□□□□□ -0.3
SMAD9-202ENST00000379826 AMOTL1Q8IY63 956 aa13.15□□□□□ -0.3
SMAD9-202ENST00000379826 TRIM22Q8IYM9 498 aa13.15□□□□□ -0.3
SMAD9-202ENST00000379826 DACH1Q9UI36 760 aa13.15□□□□□ -0.3
SMAD9-202ENST00000379826 CRB1P82279 1406 aa13.15□□□□□ -0.3
SMAD9-202ENST00000379826 METAP2P50579 478 aaKnown RBP eCLIP13.15□□□□□ -0.31
SMAD9-202ENST00000379826 GNG11P61952 73 aa13.15□□□□□ -0.31
SMAD9-202ENST00000379826 ARID5BQ14865 1188 aa13.15□□□□□ -0.31
SMAD9-202ENST00000379826 FILIP1LQ4L180 1135 aa13.15□□□□□ -0.31
SMAD9-202ENST00000379826 GOLGA8AA7E2F4 631 aa13.14□□□□□ -0.31
SMAD9-202ENST00000379826 TAF3Q5VWG9 929 aa13.14□□□□□ -0.31
SMAD9-202ENST00000379826 LRRC8AQ8IWT6 810 aa13.14□□□□□ -0.31
SMAD9-202ENST00000379826 MAP2P11137 1827 aaKnown RBP13.14□□□□□ -0.31
SMAD9-202ENST00000379826 CHRNA2Q15822 529 aa13.14□□□□□ -0.31
SMAD9-202ENST00000379826 ARHGAP29Q52LW3 1261 aa13.14□□□□□ -0.31
SMAD9-202ENST00000379826 MAP4K1Q92918 833 aa13.14□□□□□ -0.31
SMAD9-202ENST00000379826 KDRP35968 1356 aa13.14□□□□□ -0.31
SMAD9-202ENST00000379826 SCRN1Q12765 414 aa13.14□□□□□ -0.31
SMAD9-202ENST00000379826 NCOA7Q8NI08 942 aa13.14□□□□□ -0.31
SMAD9-202ENST00000379826 ZNF594Q96JF6 807 aaPredicted RBP13.14□□□□□ -0.31
SMAD9-202ENST00000379826 CWC25Q9NXE8 425 aaPredicted RBP13.14□□□□□ -0.31
SMAD9-202ENST00000379826 TRPC5Q9UL62 973 aaPredicted RBP13.14□□□□□ -0.31
SMAD9-202ENST00000379826 SNRPA1P09661 255 aaKnown RBP13.14□□□□□ -0.31
SMAD9-202ENST00000379826 DHX8Q14562 1220 aaKnown RBP13.14□□□□□ -0.31
SMAD9-202ENST00000379826 UTP14AQ9BVJ6 771 aaKnown RBP13.14□□□□□ -0.31
SMAD9-202ENST00000379826 TDO2P48775 406 aa13.13□□□□□ -0.31
SMAD9-202ENST00000379826 FAM193AP78312 1265 aa13.13□□□□□ -0.31
SMAD9-202ENST00000379826 PTPN21Q16825 1174 aa13.13□□□□□ -0.31
SMAD9-202ENST00000379826 LEKR1Q6ZMV7 388 aa13.13□□□□□ -0.31
SMAD9-202ENST00000379826 KCNG4Q8TDN1 519 aa13.13□□□□□ -0.31
SMAD9-202ENST00000379826 SMARCE1Q969G3 411 aa13.13□□□□□ -0.31
SMAD9-202ENST00000379826 ALG1Q9BT22 464 aa13.13□□□□□ -0.31
SMAD9-202ENST00000379826 SLC26A6Q9BXS9 759 aa13.13□□□□□ -0.31
SMAD9-202ENST00000379826 BABAM1Q9NWV8 329 aa13.13□□□□□ -0.31
SMAD9-202ENST00000379826 CACTINQ8WUQ7 758 aaKnown RBP13.13□□□□□ -0.31
SMAD9-202ENST00000379826 CCDC102AQ96A19 550 aa13.13□□□□□ -0.31
SMAD9-202ENST00000379826 RNF113AO15541 343 aaKnown RBP13.13□□□□□ -0.31
SMAD9-202ENST00000379826 USP28Q96RU2 1077 aa13.13□□□□□ -0.31
SMAD9-202ENST00000379826 CWC15Q9P013 229 aaKnown RBP13.13□□□□□ -0.31
SMAD9-202ENST00000379826 XBP1P17861 261 aa13.13□□□□□ -0.31
SMAD9-202ENST00000379826 SSRP1Q08945 709 aaKnown RBP13.13□□□□□ -0.31
SMAD9-202ENST00000379826 DDB1Q16531 1140 aa13.13□□□□□ -0.31
SMAD9-202ENST00000379826 BRMS1Q9HCU9 246 aa13.13□□□□□ -0.31
SMAD9-202ENST00000379826 TMOD3Q9NYL9 352 aa13.13□□□□□ -0.31
SMAD9-202ENST00000379826 NAA30Q147X3 362 aaPredicted RBP13.12□□□□□ -0.31
SMAD9-202ENST00000379826 SLC12A7Q9Y666 1083 aa13.12□□□□□ -0.31
SMAD9-202ENST00000379826 A2ML1A8K2U0 1454 aa13.12□□□□□ -0.31
SMAD9-202ENST00000379826 TMEM2Q9UHN6 1383 aa13.12□□□□□ -0.31
SMAD9-202ENST00000379826 GPTP24298 496 aa13.12□□□□□ -0.31
SMAD9-202ENST00000379826 RBM5P52756 815 aaKnown RBP eCLIP13.12□□□□□ -0.31
SMAD9-202ENST00000379826 ZNF622Q969S3 477 aaKnown RBP eCLIP13.12□□□□□ -0.31
SMAD9-202ENST00000379826 DDX21Q9NR30 783 aaKnown RBP eCLIP13.12□□□□□ -0.31
SMAD9-202ENST00000379826 ZNF215Q9UL58 517 aaPredicted RBP13.12□□□□□ -0.31
SMAD9-202ENST00000379826 SPECC1Q5M775 1068 aa13.12□□□□□ -0.31
SMAD9-202ENST00000379826 AKAP2Q9Y2D5 859 aa13.12□□□□□ -0.31
SMAD9-202ENST00000379826 NEURL4Q96JN8 1562 aa13.12□□□□□ -0.31
Retrieved 100 of 20,778 RNA–protein pairs in 16.9 ms