RNA–Protein interactions for RNA: ENST00000376634.8

VPS13A-204, Transcript of vacuolar protein sorting 13 homolog A, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene VPS13A, Length 10,269 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13A-204ENST00000376634 NEK11Q8NG66 645 aa14.09□□□□□ -0.15
VPS13A-204ENST00000376634 TFIP11Q9UBB9 837 aaKnown RBP14.09□□□□□ -0.15
VPS13A-204ENST00000376634 TEX13AQ9BXU3 409 aaPredicted RBP14.09□□□□□ -0.15
VPS13A-204ENST00000376634 SYT1P21579 422 aa14.09□□□□□ -0.15
VPS13A-204ENST00000376634 ERCC6LQ2NKX8 1250 aa14.09□□□□□ -0.15
VPS13A-204ENST00000376634 MTRF1LQ9UGC7 380 aaKnown RBP14.09□□□□□ -0.15
VPS13A-204ENST00000376634 RALGAPBQ86X10 1494 aa14.09□□□□□ -0.15
VPS13A-204ENST00000376634 RFC4P35249 363 aa14.09□□□□□ -0.15
VPS13A-204ENST00000376634 CCDC25Q86WR0 208 aa14.09□□□□□ -0.15
VPS13A-204ENST00000376634 TMTC2Q8N394 836 aa14.09□□□□□ -0.15
VPS13A-204ENST00000376634 ARAP1Q96P48 1450 aa14.09□□□□□ -0.15
VPS13A-204ENST00000376634 KRT83P78385 493 aa14.09□□□□□ -0.15
VPS13A-204ENST00000376634 NAPAP54920 295 aa14.09□□□□□ -0.15
VPS13A-204ENST00000376634 NEK1Q96PY6 1258 aa14.09□□□□□ -0.15
VPS13A-204ENST00000376634 GDPD2Q9HCC8 539 aa14.09□□□□□ -0.15
VPS13A-204ENST00000376634 SDAD1Q9NVU7 687 aaKnown RBP eCLIP14.09□□□□□ -0.153e-6■■■■□ 26.1
VPS13A-204ENST00000376634 KIF21AQ7Z4S6 1674 aa14.09□□□□□ -0.15
VPS13A-204ENST00000376634 ATP5DP30049 168 aa14.08□□□□□ -0.15
VPS13A-204ENST00000376634 USHBP1Q8N6Y0 703 aa14.08□□□□□ -0.15
VPS13A-204ENST00000376634 TTC36A6NLP5 189 aa14.08□□□□□ -0.16
VPS13A-204ENST00000376634 TERF1P54274 439 aa14.08□□□□□ -0.16
VPS13A-204ENST00000376634 CPLX4Q7Z7G2 160 aa14.08□□□□□ -0.16
VPS13A-204ENST00000376634 FEZ2Q9UHY8 353 aaPredicted RBP14.08□□□□□ -0.16
VPS13A-204ENST00000376634 RTL1A6NKG5 1358 aa14.08□□□□□ -0.16
VPS13A-204ENST00000376634 EBAG9O00559 213 aa14.08□□□□□ -0.16
VPS13A-204ENST00000376634 KAT6AQ92794 2004 aa14.08□□□□□ -0.16
VPS13A-204ENST00000376634 OGFOD1Q8N543 542 aa14.08□□□□□ -0.16
VPS13A-204ENST00000376634 CEP120Q8N960 986 aa14.08□□□□□ -0.16
VPS13A-204ENST00000376634 CAPZA3Q96KX2 299 aa14.08□□□□□ -0.16
VPS13A-204ENST00000376634 UBXN1Q04323 297 aa14.08□□□□□ -0.16
VPS13A-204ENST00000376634 IGF1RP08069 1367 aa14.08□□□□□ -0.16
VPS13A-204ENST00000376634 SETSIPP0DME0 302 aa14.08□□□□□ -0.16
VPS13A-204ENST00000376634 UNC13AQ9UPW8 1703 aa14.08□□□□□ -0.16
VPS13A-204ENST00000376634 CAPN2P17655 700 aa14.08□□□□□ -0.16
VPS13A-204ENST00000376634 GNAQP50148 359 aa14.08□□□□□ -0.16
VPS13A-204ENST00000376634 ATP11AP98196 1134 aa14.08□□□□□ -0.16
VPS13A-204ENST00000376634 SEC62Q99442 399 aaKnown RBP14.08□□□□□ -0.16
VPS13A-204ENST00000376634 LARP6Q9BRS8 491 aaKnown RBP14.08□□□□□ -0.16
VPS13A-204ENST00000376634 FRMD4BQ9Y2L6 1034 aa14.08□□□□□ -0.16
VPS13A-204ENST00000376634 SKILP12757 684 aa14.07□□□□□ -0.16
VPS13A-204ENST00000376634 ZNF804AQ7Z570 1209 aa14.07□□□□□ -0.16
VPS13A-204ENST00000376634 NUMA1Q14980 2115 aa14.07□□□□□ -0.16
VPS13A-204ENST00000376634 ADAMTS2O95450 1211 aa14.07□□□□□ -0.16
VPS13A-204ENST00000376634 SATB1Q01826 763 aa14.07□□□□□ -0.16
VPS13A-204ENST00000376634 RARSP54136 660 aaKnown RBP14.07□□□□□ -0.16
VPS13A-204ENST00000376634 LACTBP83111 547 aaPredicted RBP14.07□□□□□ -0.16
VPS13A-204ENST00000376634 FLIIQ13045 1269 aa14.07□□□□□ -0.16
VPS13A-204ENST00000376634 MICALL1Q8N3F8 863 aa14.07□□□□□ -0.16
VPS13A-204ENST00000376634 ZNF622Q969S3 477 aaKnown RBP eCLIP14.07□□□□□ -0.162e-6■■□□□ 14.3
VPS13A-204ENST00000376634 FAM212AQ96EL1 285 aa14.07□□□□□ -0.16
VPS13A-204ENST00000376634 GBP6Q6ZN66 633 aa14.07□□□□□ -0.16
VPS13A-204ENST00000376634 TCHPQ9BT92 498 aa14.07□□□□□ -0.16
VPS13A-204ENST00000376634 FAM169AQ9Y6X4 670 aa14.07□□□□□ -0.16
VPS13A-204ENST00000376634 NSD2O96028 1365 aa14.07□□□□□ -0.16
VPS13A-204ENST00000376634 SMIM23A6NLE4 172 aa14.07□□□□□ -0.16
VPS13A-204ENST00000376634 F6X3S4 739 aa14.07□□□□□ -0.16
VPS13A-204ENST00000376634 INF2Q27J81 1249 aa14.07□□□□□ -0.16
VPS13A-204ENST00000376634 NGLY1Q96IV0 654 aa14.07□□□□□ -0.16
VPS13A-204ENST00000376634 ADGBQ8N7X0 1667 aa14.07□□□□□ -0.16
VPS13A-204ENST00000376634 HCLS1P14317 486 aaPredicted RBP14.07□□□□□ -0.16
VPS13A-204ENST00000376634 CALML3P27482 149 aa14.07□□□□□ -0.16
VPS13A-204ENST00000376634 GPR161Q8N6U8 529 aaKnown RBP14.07□□□□□ -0.16
VPS13A-204ENST00000376634 SMARCC2Q8TAQ2 1214 aa14.07□□□□□ -0.16
VPS13A-204ENST00000376634 ARHGEF11O15085 1522 aa14.06□□□□□ -0.16
VPS13A-204ENST00000376634 NAA25Q14CX7 972 aa14.06□□□□□ -0.16
VPS13A-204ENST00000376634 SBDSQ9Y3A5 250 aaKnown RBP eCLIP14.06□□□□□ -0.16
VPS13A-204ENST00000376634 MYO9BQ13459 2157 aa14.06□□□□□ -0.16
VPS13A-204ENST00000376634 RAB11FIP4Q86YS3 637 aa14.06□□□□□ -0.16
VPS13A-204ENST00000376634 AFAP1L2Q8N4X5 818 aa14.06□□□□□ -0.16
VPS13A-204ENST00000376634 PRPF31Q8WWY3 499 aaKnown RBP14.06□□□□□ -0.16
VPS13A-204ENST00000376634 ZEB2O60315 1214 aa14.06□□□□□ -0.16
VPS13A-204ENST00000376634 ALG1Q9BT22 464 aa14.06□□□□□ -0.16
VPS13A-204ENST00000376634 RBM27Q9P2N5 1060 aaKnown RBP14.06□□□□□ -0.16
VPS13A-204ENST00000376634 HDAC9Q9UKV0 1011 aa14.06□□□□□ -0.16
VPS13A-204ENST00000376634 IFT140Q96RY7 1462 aa14.06□□□□□ -0.16
VPS13A-204ENST00000376634 DNAJC21Q5F1R6 531 aaKnown RBP14.06□□□□□ -0.16
VPS13A-204ENST00000376634 LDHAL6AQ6ZMR3 332 aa14.06□□□□□ -0.16
VPS13A-204ENST00000376634 KIFC2Q96AC6 838 aa14.06□□□□□ -0.16
VPS13A-204ENST00000376634 E7EVH7 732 aa14.06□□□□□ -0.16
VPS13A-204ENST00000376634 SEL1L2Q5TEA6 688 aa14.06□□□□□ -0.16
VPS13A-204ENST00000376634 VAV2P52735 878 aa14.05□□□□□ -0.16
VPS13A-204ENST00000376634 STK10O94804 968 aaKnown RBP14.05□□□□□ -0.16
VPS13A-204ENST00000376634 TBC1D2Q9BYX2 928 aa14.05□□□□□ -0.16
VPS13A-204ENST00000376634 ZSCAN22P10073 491 aaPredicted RBP14.05□□□□□ -0.16
VPS13A-204ENST00000376634 HSP90AA4PQ58FG1 418 aa14.05□□□□□ -0.16
VPS13A-204ENST00000376634 BMP2KLQ5H9B9 411 aa14.05□□□□□ -0.16
VPS13A-204ENST00000376634 IFT74Q96LB3 600 aa14.05□□□□□ -0.16
VPS13A-204ENST00000376634 PPAN-P2RY11A0A0B4J1V8 794 aaPredicted RBP14.05□□□□□ -0.16
VPS13A-204ENST00000376634 RRP36Q96EU6 259 aaKnown RBP14.05□□□□□ -0.16
VPS13A-204ENST00000376634 KCNK9Q9NPC2 374 aa14.05□□□□□ -0.16
VPS13A-204ENST00000376634 PPANQ9NQ55 473 aaKnown RBP14.05□□□□□ -0.16
VPS13A-204ENST00000376634 ASXL1Q8IXJ9 1541 aa14.05□□□□□ -0.16
VPS13A-204ENST00000376634 VCX3BQ9H321 246 aa14.05□□□□□ -0.16
VPS13A-204ENST00000376634 CSRNP2Q9H175 543 aa14.05□□□□□ -0.16
VPS13A-204ENST00000376634 AGTPBP1Q9UPW5 1226 aa14.05□□□□□ -0.16
VPS13A-204ENST00000376634 MRPS27Q92552 414 aaKnown RBP14.05□□□□□ -0.16
VPS13A-204ENST00000376634 KIFAP3Q92845 792 aa14.05□□□□□ -0.16
VPS13A-204ENST00000376634 NKIRAS1Q9NYS0 192 aa14.05□□□□□ -0.16
VPS13A-204ENST00000376634 SNAPC4Q5SXM2 1469 aa14.04□□□□□ -0.16
VPS13A-204ENST00000376634 GBP1P32455 592 aa14.04□□□□□ -0.16
Retrieved 100 of 20,778 RNA–protein pairs in 18.1 ms