RNA–Protein interactions for RNA: ENST00000367257.8

SYNE1-209, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 5

Gene SYNE1, Length 5,022 nt, Biotype protein coding, Subcellular localisation Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-209ENST00000367257 KDM5AP29375 1690 aaKnown RBP10.13□□□□□ -0.79
SYNE1-209ENST00000367257 SETD1AO15047 1707 aaKnown RBP10.13□□□□□ -0.79
SYNE1-209ENST00000367257 MYL6BP14649 208 aa10.13□□□□□ -0.79
SYNE1-209ENST00000367257 ATP5DP30049 168 aa10.13□□□□□ -0.79
SYNE1-209ENST00000367257 OTUD6BQ8N6M0 293 aa10.13□□□□□ -0.79
SYNE1-209ENST00000367257 CCDC113Q9H0I3 377 aa10.13□□□□□ -0.79
SYNE1-209ENST00000367257 HOMER2Q9NSB8 354 aa10.13□□□□□ -0.79
SYNE1-209ENST00000367257 ZFYVE9O95405 1425 aa10.13□□□□□ -0.79
SYNE1-209ENST00000367257 KIF1CO43896 1103 aaKnown RBP10.13□□□□□ -0.79
SYNE1-209ENST00000367257 SYKP43405 635 aa10.13□□□□□ -0.79
SYNE1-209ENST00000367257 SH3BGRP55822 239 aaPredicted RBP10.13□□□□□ -0.79
SYNE1-209ENST00000367257 GNG11P61952 73 aa10.13□□□□□ -0.79
SYNE1-209ENST00000367257 FLIIQ13045 1269 aa10.13□□□□□ -0.79
SYNE1-209ENST00000367257 SMC5Q8IY18 1101 aa10.13□□□□□ -0.79
SYNE1-209ENST00000367257 CRACR2BQ8N4Y2 399 aaPredicted RBP10.13□□□□□ -0.79
SYNE1-209ENST00000367257 PIBF1Q8WXW3 757 aa10.13□□□□□ -0.79
SYNE1-209ENST00000367257 ORC3Q9UBD5 711 aaPredicted RBP10.13□□□□□ -0.79
SYNE1-209ENST00000367257 USP16Q9Y5T5 823 aa10.13□□□□□ -0.79
SYNE1-209ENST00000367257 LMTK2Q8IWU2 1503 aa10.12□□□□□ -0.79
SYNE1-209ENST00000367257 NPHP3Q7Z494 1330 aa10.12□□□□□ -0.79
SYNE1-209ENST00000367257 SF3B2Q13435 895 aaKnown RBP10.12□□□□□ -0.79
SYNE1-209ENST00000367257 MAATS1Q7Z4T9 603 aa10.12□□□□□ -0.79
SYNE1-209ENST00000367257 MSANTD4Q8NCY6 345 aa10.12□□□□□ -0.79
SYNE1-209ENST00000367257 GOPCQ9HD26 462 aa10.12□□□□□ -0.79
SYNE1-209ENST00000367257 ARHGEF40Q8TER5 1519 aa10.12□□□□□ -0.79
SYNE1-209ENST00000367257 CTAGE9A4FU28 777 aa10.12□□□□□ -0.79
SYNE1-209ENST00000367257 TBCAO75347 108 aaKnown RBP10.12□□□□□ -0.79
SYNE1-209ENST00000367257 MAP4K4O95819 1239 aaPredicted RBP10.12□□□□□ -0.79
SYNE1-209ENST00000367257 TRIM27P14373 513 aa10.12□□□□□ -0.79
SYNE1-209ENST00000367257 ALDH3A1P30838 453 aa10.12□□□□□ -0.79
SYNE1-209ENST00000367257 GRIPAP1Q4V328 841 aa10.12□□□□□ -0.79
SYNE1-209ENST00000367257 ZSCAN29Q8IWY8 852 aaPredicted RBP10.12□□□□□ -0.79
SYNE1-209ENST00000367257 RPUSD2Q8IZ73 545 aaKnown RBP10.12□□□□□ -0.79
SYNE1-209ENST00000367257 CCDC110Q8TBZ0 833 aa10.12□□□□□ -0.79
SYNE1-209ENST00000367257 POLR3AO14802 1390 aaPredicted RBP10.12□□□□□ -0.79
SYNE1-209ENST00000367257 N4BP3O15049 544 aa10.12□□□□□ -0.79
SYNE1-209ENST00000367257 DBN1Q16643 649 aa10.12□□□□□ -0.79
SYNE1-209ENST00000367257 MFSD6Q6ZSS7 791 aa10.12□□□□□ -0.79
SYNE1-209ENST00000367257 KAT14Q9H8E8 782 aa10.12□□□□□ -0.79
SYNE1-209ENST00000367257 BABAM1Q9NWV8 329 aa10.12□□□□□ -0.79
SYNE1-209ENST00000367257 AKR1B10O60218 316 aa10.11□□□□□ -0.79
SYNE1-209ENST00000367257 HLA-DOAP06340 250 aa10.11□□□□□ -0.79
SYNE1-209ENST00000367257 UBASH3AP57075 661 aa10.11□□□□□ -0.79
SYNE1-209ENST00000367257 TMEM67Q5HYA8 995 aa10.11□□□□□ -0.79
SYNE1-209ENST00000367257 FERMT3Q86UX7 667 aa10.11□□□□□ -0.79
SYNE1-209ENST00000367257 CCDC50Q8IVM0 306 aa10.11□□□□□ -0.79
SYNE1-209ENST00000367257 HDAC9Q9UKV0 1011 aa10.11□□□□□ -0.79
SYNE1-209ENST00000367257 USH1CQ9Y6N9 552 aa10.11□□□□□ -0.79
SYNE1-209ENST00000367257 AOX1Q06278 1338 aa10.11□□□□□ -0.79
SYNE1-209ENST00000367257 PABPN1LA6NDY0 278 aaKnown RBP10.11□□□□□ -0.79
SYNE1-209ENST00000367257 CCDC174Q6PII3 467 aa10.11□□□□□ -0.79
SYNE1-209ENST00000367257 NAP1L3Q99457 506 aaPredicted RBP10.11□□□□□ -0.79
SYNE1-209ENST00000367257 CRNKL1Q9BZJ0 848 aaKnown RBP10.11□□□□□ -0.79
SYNE1-209ENST00000367257 CWC25Q9NXE8 425 aaPredicted RBP10.11□□□□□ -0.79
SYNE1-209ENST00000367257 CEP83Q9Y592 693 aa10.11□□□□□ -0.79
SYNE1-209ENST00000367257 NUTM2GQ5VZR2 741 aa10.11□□□□□ -0.79
SYNE1-209ENST00000367257 KLHL10Q6JEL2 608 aa10.11□□□□□ -0.79
SYNE1-209ENST00000367257 BICDL1Q6ZP65 573 aa10.11□□□□□ -0.79
SYNE1-209ENST00000367257 CEP152O94986 1710 aa10.11□□□□□ -0.79
SYNE1-209ENST00000367257 B4DLN1 442 aa10.11□□□□□ -0.79
SYNE1-209ENST00000367257 RBM5P52756 815 aaKnown RBP eCLIP10.11□□□□□ -0.79
SYNE1-209ENST00000367257 MRPL12P52815 198 aaKnown RBP10.11□□□□□ -0.79
SYNE1-209ENST00000367257 HNRNPUL1Q9BUJ2 856 aaKnown RBP eCLIP10.11□□□□□ -0.79
SYNE1-209ENST00000367257 MLH3Q9UHC1 1453 aa10.1□□□□□ -0.79
SYNE1-209ENST00000367257 MSL1Q68DK7 614 aa10.1□□□□□ -0.79
SYNE1-209ENST00000367257 PPP1R42Q7Z4L9 355 aa10.1□□□□□ -0.79
SYNE1-209ENST00000367257 ANKRD44Q8N8A2 993 aa10.1□□□□□ -0.79
SYNE1-209ENST00000367257 FBF1Q8TES7 1133 aa10.1□□□□□ -0.79
SYNE1-209ENST00000367257 TRIM47Q96LD4 638 aa10.1□□□□□ -0.79
SYNE1-209ENST00000367257 SCLT1Q96NL6 688 aa10.1□□□□□ -0.79
SYNE1-209ENST00000367257 BOLA2Q9H3K6 86 aa10.1□□□□□ -0.79
SYNE1-209ENST00000367257 PIK3C2GO75747 1445 aa10.1□□□□□ -0.79
SYNE1-209ENST00000367257 ATP2A2P16615 1042 aaKnown RBP10.1□□□□□ -0.79
SYNE1-209ENST00000367257 TNNC1P63316 161 aa10.1□□□□□ -0.79
SYNE1-209ENST00000367257 VWA3BQ502W6 1294 aa10.1□□□□□ -0.79
SYNE1-209ENST00000367257 ESR2Q92731 530 aa10.1□□□□□ -0.79
SYNE1-209ENST00000367257 GTF3C6Q969F1 213 aa10.1□□□□□ -0.79
SYNE1-209ENST00000367257 MYD88Q99836 296 aa10.1□□□□□ -0.79
SYNE1-209ENST00000367257 JADE2Q9NQC1 790 aa10.1□□□□□ -0.79
SYNE1-209ENST00000367257 WASLO00401 505 aaPredicted RBP10.1□□□□□ -0.79
SYNE1-209ENST00000367257 KRT13P13646 458 aa10.1□□□□□ -0.79
SYNE1-209ENST00000367257 ICE2Q659A1 982 aa10.1□□□□□ -0.79
SYNE1-209ENST00000367257 DAAM2Q86T65 1068 aa10.1□□□□□ -0.79
SYNE1-209ENST00000367257 CNGA4Q8IV77 575 aa10.1□□□□□ -0.79
SYNE1-209ENST00000367257 IQCGQ9H095 443 aaKnown RBP10.1□□□□□ -0.79
SYNE1-209ENST00000367257 SKILP12757 684 aa10.1□□□□□ -0.79
SYNE1-209ENST00000367257 SMC6Q96SB8 1091 aa10.1□□□□□ -0.79
SYNE1-209ENST00000367257 MTRF1LQ9UGC7 380 aaKnown RBP10.1□□□□□ -0.79
SYNE1-209ENST00000367257 KDM4AO75164 1064 aa10.09□□□□□ -0.79
SYNE1-209ENST00000367257 ZPR1O75312 459 aa10.09□□□□□ -0.79
SYNE1-209ENST00000367257 B4GALNT4Q76KP1 1039 aa10.09□□□□□ -0.79
SYNE1-209ENST00000367257 TMX3Q96JJ7 454 aa10.09□□□□□ -0.79
SYNE1-209ENST00000367257 NUCKS1Q9H1E3 243 aaKnown RBP10.09□□□□□ -0.79
SYNE1-209ENST00000367257 TRMT1Q9NXH9 659 aaKnown RBP10.09□□□□□ -0.79
SYNE1-209ENST00000367257 F13A1P00488 732 aa10.09□□□□□ -0.79
SYNE1-209ENST00000367257 VAV2P52735 878 aa10.09□□□□□ -0.79
SYNE1-209ENST00000367257 ZSCAN26Q16670 478 aa10.09□□□□□ -0.79
SYNE1-209ENST00000367257 CCDC121Q6ZUS5 278 aa10.09□□□□□ -0.79
SYNE1-209ENST00000367257 ZNF830Q96NB3 372 aaPredicted RBP10.09□□□□□ -0.79
SYNE1-209ENST00000367257 CABP5Q9NP86 173 aa10.09□□□□□ -0.79
Retrieved 100 of 20,778 RNA–protein pairs in 21.2 ms