RNA–Protein interactions for RNA: ENST00000358808.6

CLIP1-202, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

APPRIS P4 TSL 1 (best) BASIC

Gene CLIP1, Length 5,880 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-202ENST00000358808 ZSWIM4Q9H7M6 989 aa11.56□□□□□ -0.56
CLIP1-202ENST00000358808 CEP83Q9Y592 693 aa11.56□□□□□ -0.56
CLIP1-202ENST00000358808 N4BP3O15049 544 aa11.56□□□□□ -0.56
CLIP1-202ENST00000358808 GABPAQ06546 454 aa11.56□□□□□ -0.56
CLIP1-202ENST00000358808 CHRNA2Q15822 529 aa11.56□□□□□ -0.56
CLIP1-202ENST00000358808 LDHAL6AQ6ZMR3 332 aa11.56□□□□□ -0.56
CLIP1-202ENST00000358808 CACYBPQ9HB71 228 aaKnown RBP11.56□□□□□ -0.56
CLIP1-202ENST00000358808 PPP4R3BQ5MIZ7 849 aa11.56□□□□□ -0.56
CLIP1-202ENST00000358808 BEGAINQ9BUH8 593 aa11.56□□□□□ -0.56
CLIP1-202ENST00000358808 SNRKQ9NRH2 765 aa11.56□□□□□ -0.56
CLIP1-202ENST00000358808 KMT5BQ4FZB7 885 aa11.55□□□□□ -0.56
CLIP1-202ENST00000358808 STMN4Q9H169 189 aaPredicted RBP11.55□□□□□ -0.56
CLIP1-202ENST00000358808 C6orf50Q9HD87 102 aa11.55□□□□□ -0.56
CLIP1-202ENST00000358808 ATP2A2P16615 1042 aaKnown RBP11.55□□□□□ -0.56
CLIP1-202ENST00000358808 GSDMDP57764 484 aa11.55□□□□□ -0.56
CLIP1-202ENST00000358808 MSL1Q68DK7 614 aa11.55□□□□□ -0.56
CLIP1-202ENST00000358808 CCDC89Q8N998 374 aa11.55□□□□□ -0.56
CLIP1-202ENST00000358808 ANKRD24Q8TF21 1146 aa11.55□□□□□ -0.56
CLIP1-202ENST00000358808 CIZ1Q9ULV3 898 aaPredicted RBP11.55□□□□□ -0.56
CLIP1-202ENST00000358808 SP4Q02446 784 aa11.55□□□□□ -0.56
CLIP1-202ENST00000358808 NBPF7P0C2Y1 421 aaPredicted RBP11.55□□□□□ -0.56
CLIP1-202ENST00000358808 EP400NLQ6ZTU2 488 aa11.55□□□□□ -0.56
CLIP1-202ENST00000358808 ACSBG1Q96GR2 724 aa11.55□□□□□ -0.56
CLIP1-202ENST00000358808 RNF216Q9NWF9 866 aaPredicted RBP11.55□□□□□ -0.56
CLIP1-202ENST00000358808 EMILIN1Q9Y6C2 1016 aa11.55□□□□□ -0.56
CLIP1-202ENST00000358808 GOLGA6L9A6NEM1 432 aa11.54□□□□□ -0.56
CLIP1-202ENST00000358808 HSPA2P54652 639 aa11.54□□□□□ -0.56
CLIP1-202ENST00000358808 CCDC65Q8IXS2 484 aa11.54□□□□□ -0.56
CLIP1-202ENST00000358808 C16orf45Q96MC5 204 aaPredicted RBP11.54□□□□□ -0.56
CLIP1-202ENST00000358808 LARP6Q9BRS8 491 aaKnown RBP11.54□□□□□ -0.56
CLIP1-202ENST00000358808 AFMP43652 599 aa11.54□□□□□ -0.56
CLIP1-202ENST00000358808 EPSTI1Q96J88 318 aa11.54□□□□□ -0.56
CLIP1-202ENST00000358808 TTC14Q96N46 770 aa11.54□□□□□ -0.56
CLIP1-202ENST00000358808 PPFIA3O75145 1194 aa11.54□□□□□ -0.56
CLIP1-202ENST00000358808 ARID5AQ03989 594 aa11.54□□□□□ -0.56
CLIP1-202ENST00000358808 SNW1Q13573 536 aaKnown RBP11.54□□□□□ -0.56
CLIP1-202ENST00000358808 NCOA7Q8NI08 942 aa11.54□□□□□ -0.56
CLIP1-202ENST00000358808 MAPKBP1O60336 1514 aa11.54□□□□□ -0.56
CLIP1-202ENST00000358808 CCDC152Q4G0S7 254 aa11.53□□□□□ -0.56
CLIP1-202ENST00000358808 IFIT1BQ5T764 474 aaKnown RBP11.53□□□□□ -0.56
CLIP1-202ENST00000358808 TMEM57Q8N5G2 664 aa11.53□□□□□ -0.56
CLIP1-202ENST00000358808 ORC3Q9UBD5 711 aaPredicted RBP11.53□□□□□ -0.56
CLIP1-202ENST00000358808 SMIM23A6NLE4 172 aa11.53□□□□□ -0.56
CLIP1-202ENST00000358808 CCDC102BQ68D86 513 aa11.53□□□□□ -0.56
CLIP1-202ENST00000358808 DNAAF4Q8WXU2 420 aa11.53□□□□□ -0.56
CLIP1-202ENST00000358808 TRIM7Q9C029 511 aa11.53□□□□□ -0.56
CLIP1-202ENST00000358808 CWC25Q9NXE8 425 aaPredicted RBP11.53□□□□□ -0.56
CLIP1-202ENST00000358808 DBF4Q9UBU7 674 aaPredicted RBP11.53□□□□□ -0.56
CLIP1-202ENST00000358808 LMTK3Q96Q04 1460 aa11.53□□□□□ -0.56
CLIP1-202ENST00000358808 ALDH3A1P30838 453 aa11.53□□□□□ -0.56
CLIP1-202ENST00000358808 PPP1R21Q6ZMI0 780 aa11.53□□□□□ -0.56
CLIP1-202ENST00000358808 BACH1O14867 736 aa11.53□□□□□ -0.56
CLIP1-202ENST00000358808 CYLC1P35663 651 aaPredicted RBP11.53□□□□□ -0.56
CLIP1-202ENST00000358808 NAPAP54920 295 aa11.53□□□□□ -0.56
CLIP1-202ENST00000358808 WTAPQ15007 396 aa11.53□□□□□ -0.56
CLIP1-202ENST00000358808 RSPH3Q86UC2 560 aa11.53□□□□□ -0.56
CLIP1-202ENST00000358808 NOC2LQ9Y3T9 749 aaKnown RBP11.53□□□□□ -0.56
CLIP1-202ENST00000358808 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP11.53□□□□□ -0.56
CLIP1-202ENST00000358808 NEMFO60524 1076 aa11.53□□□□□ -0.56
CLIP1-202ENST00000358808 ATP6V1AP38606 617 aa11.53□□□□□ -0.56
CLIP1-202ENST00000358808 JDP2Q8WYK2 163 aa11.53□□□□□ -0.56
CLIP1-202ENST00000358808 KIFC2Q96AC6 838 aa11.53□□□□□ -0.56
CLIP1-202ENST00000358808 CCDC114Q96M63 670 aa11.53□□□□□ -0.56
CLIP1-202ENST00000358808 CALCOCO1Q9P1Z2 691 aa11.53□□□□□ -0.56
CLIP1-202ENST00000358808 SPDYE3A6NKU9 549 aa11.52□□□□□ -0.56
CLIP1-202ENST00000358808 GNG11P61952 73 aa11.52□□□□□ -0.56
CLIP1-202ENST00000358808 ZGPATQ8N5A5 531 aaKnown RBP11.52□□□□□ -0.56
CLIP1-202ENST00000358808 NACA2Q9H009 215 aa11.52□□□□□ -0.56
CLIP1-202ENST00000358808 DDX19AQ9NUU7 478 aaKnown RBP11.52□□□□□ -0.56
CLIP1-202ENST00000358808 GJB2P29033 226 aa11.52□□□□□ -0.57
CLIP1-202ENST00000358808 SPOUT1Q5T280 376 aaKnown RBP11.52□□□□□ -0.57
CLIP1-202ENST00000358808 NBPF14Q5TI25 921 aa11.52□□□□□ -0.57
CLIP1-202ENST00000358808 LMBR1Q8WVP7 490 aa11.52□□□□□ -0.57
CLIP1-202ENST00000358808 GOLGA1Q92805 767 aa11.52□□□□□ -0.57
CLIP1-202ENST00000358808 TTC21BQ7Z4L5 1316 aa11.52□□□□□ -0.57
CLIP1-202ENST00000358808 ATP6V0A2Q9Y487 856 aa11.52□□□□□ -0.57
CLIP1-202ENST00000358808 ADGRF5Q8IZF2 1346 aa11.52□□□□□ -0.57
CLIP1-202ENST00000358808 PLEKHH1Q9ULM0 1364 aa11.52□□□□□ -0.57
CLIP1-202ENST00000358808 ASIC1P78348 528 aa11.52□□□□□ -0.57
CLIP1-202ENST00000358808 ZNF408Q9H9D4 720 aa11.52□□□□□ -0.57
CLIP1-202ENST00000358808 LIMCH1Q9UPQ0 1083 aa11.52□□□□□ -0.57
CLIP1-202ENST00000358808 DNMT1P26358 1616 aaKnown RBP11.52□□□□□ -0.57
CLIP1-202ENST00000358808 CYP7A1P22680 504 aa11.52□□□□□ -0.57
CLIP1-202ENST00000358808 SLC8A3P57103 927 aa11.52□□□□□ -0.57
CLIP1-202ENST00000358808 ANKS4BQ8N8V4 417 aa11.52□□□□□ -0.57
CLIP1-202ENST00000358808 TFIP11Q9UBB9 837 aaKnown RBP11.52□□□□□ -0.57
CLIP1-202ENST00000358808 MAP3K2Q9Y2U5 619 aa11.52□□□□□ -0.57
CLIP1-202ENST00000358808 TACC3Q9Y6A5 838 aa11.52□□□□□ -0.57
CLIP1-202ENST00000358808 EVI5LQ96CN4 794 aa11.51□□□□□ -0.57
CLIP1-202ENST00000358808 SETDB2Q96T68 719 aa11.51□□□□□ -0.57
CLIP1-202ENST00000358808 E7EVH7 732 aa11.51□□□□□ -0.57
CLIP1-202ENST00000358808 ATP5J2-PTCD1G3V325 749 aa11.51□□□□□ -0.57
CLIP1-202ENST00000358808 CCDC129Q6ZRS4 1044 aa11.51□□□□□ -0.57
CLIP1-202ENST00000358808 GSDMBQ8TAX9 411 aa11.51□□□□□ -0.57
CLIP1-202ENST00000358808 GPHNQ9NQX3 736 aaPredicted RBP11.51□□□□□ -0.57
CLIP1-202ENST00000358808 UQCRFS1P1P0C7P4 283 aa11.51□□□□□ -0.57
CLIP1-202ENST00000358808 MNAT1P51948 309 aa11.51□□□□□ -0.57
CLIP1-202ENST00000358808 PPP1R7Q15435 360 aa11.51□□□□□ -0.57
CLIP1-202ENST00000358808 UAP1Q16222 522 aaPredicted RBP11.51□□□□□ -0.57
CLIP1-202ENST00000358808 C20orf194Q5TEA3 1177 aa11.51□□□□□ -0.57
Retrieved 100 of 20,778 RNA–protein pairs in 26 ms