RNA–Protein interactions for RNA: ENST00000355766.5

VPS13A-201, Transcript of vacuolar protein sorting 13 homolog A, humanhuman

TSL 3

Gene VPS13A, Length 753 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13A-201ENST00000355766 SCTRP47872 440 aa9.58□□□□□ -0.88
VPS13A-201ENST00000355766 NDUFB9Q9Y6M9 179 aa9.58□□□□□ -0.88
VPS13A-201ENST00000355766 NSD2O96028 1365 aa9.58□□□□□ -0.88
VPS13A-201ENST00000355766 USP47Q96K76 1375 aa9.58□□□□□ -0.88
VPS13A-201ENST00000355766 CICQ96RK0 1608 aaPredicted RBP9.57□□□□□ -0.88
VPS13A-201ENST00000355766 LY75O60449 1722 aa9.57□□□□□ -0.88
VPS13A-201ENST00000355766 DOT1LQ8TEK3 1739 aa9.57□□□□□ -0.88
VPS13A-201ENST00000355766 SLURP2P0DP57 97 aa9.57□□□□□ -0.88
VPS13A-201ENST00000355766 ZNF385CQ66K41 422 aaPredicted RBP9.57□□□□□ -0.88
VPS13A-201ENST00000355766 WHAMMQ8TF30 809 aa9.57□□□□□ -0.88
VPS13A-201ENST00000355766 NLRP2Q9NX02 1062 aa9.57□□□□□ -0.88
VPS13A-201ENST00000355766 ANKRD36BQ8N2N9 1353 aa9.57□□□□□ -0.88
VPS13A-201ENST00000355766 ROCK2O75116 1388 aaKnown RBP9.56□□□□□ -0.88
VPS13A-201ENST00000355766 GPC1P35052 558 aa9.56□□□□□ -0.88
VPS13A-201ENST00000355766 KCNQ4P56696 695 aa9.56□□□□□ -0.88
VPS13A-201ENST00000355766 NBPF1Q3BBV0 1214 aa9.56□□□□□ -0.88
VPS13A-201ENST00000355766 MSL1Q68DK7 614 aa9.56□□□□□ -0.88
VPS13A-201ENST00000355766 ADAMTS8Q9UP79 889 aa9.56□□□□□ -0.88
VPS13A-201ENST00000355766 PCDHB11Q9Y5F2 797 aa9.56□□□□□ -0.88
VPS13A-201ENST00000355766 CD2APQ9Y5K6 639 aa9.56□□□□□ -0.88
VPS13A-201ENST00000355766 GSK3AP49840 483 aa9.55□□□□□ -0.88
VPS13A-201ENST00000355766 KCNMA1Q12791 1236 aa9.55□□□□□ -0.88
VPS13A-201ENST00000355766 TPRNQ4KMQ1 711 aa9.55□□□□□ -0.88
VPS13A-201ENST00000355766 COL23A1Q86Y22 540 aaPredicted RBP9.55□□□□□ -0.88
VPS13A-201ENST00000355766 SVOPQ8N4V2 548 aa9.55□□□□□ -0.88
VPS13A-201ENST00000355766 ZNF330Q9Y3S2 320 aaPredicted RBP9.55□□□□□ -0.88
VPS13A-201ENST00000355766 MON2Q7Z3U7 1717 aa9.54□□□□□ -0.88
VPS13A-201ENST00000355766 USP31Q70CQ4 1352 aa9.54□□□□□ -0.88
VPS13A-201ENST00000355766 HSPA5P11021 654 aaKnown RBP9.54□□□□□ -0.88
VPS13A-201ENST00000355766 DNAJC5GQ8N7S2 189 aa9.54□□□□□ -0.88
VPS13A-201ENST00000355766 ANKRD24Q8TF21 1146 aa9.54□□□□□ -0.88
VPS13A-201ENST00000355766 ZNF592Q92610 1267 aa9.54□□□□□ -0.88
VPS13A-201ENST00000355766 OSBPL3Q9H4L5 887 aa9.54□□□□□ -0.88
VPS13A-201ENST00000355766 CCNL1Q9UK58 526 aaPredicted RBP9.54□□□□□ -0.88
VPS13A-201ENST00000355766 FAM208AQ9UK61 1670 aaKnown RBP9.54□□□□□ -0.88
VPS13A-201ENST00000355766 EVC2Q86UK5 1308 aa9.54□□□□□ -0.88
VPS13A-201ENST00000355766 KTN1Q86UP2 1357 aaKnown RBP9.53□□□□□ -0.88
VPS13A-201ENST00000355766 TRAK2O60296 914 aa9.53□□□□□ -0.88
VPS13A-201ENST00000355766 POU4F2Q12837 409 aa9.53□□□□□ -0.88
VPS13A-201ENST00000355766 CYP2U1Q7Z449 544 aa9.53□□□□□ -0.88
VPS13A-201ENST00000355766 SYTL4Q96C24 671 aaPredicted RBP9.53□□□□□ -0.88
VPS13A-201ENST00000355766 NLRP3Q96P20 1036 aa9.53□□□□□ -0.88
VPS13A-201ENST00000355766 IGSF1Q8N6C5 1336 aa9.53□□□□□ -0.88
VPS13A-201ENST00000355766 LTN1O94822 1766 aa9.52□□□□□ -0.88
VPS13A-201ENST00000355766 SBNO2Q9Y2G9 1366 aa9.52□□□□□ -0.88
VPS13A-201ENST00000355766 C5P01031 1676 aa9.52□□□□□ -0.89
VPS13A-201ENST00000355766 APBB1O00213 710 aa9.52□□□□□ -0.89
VPS13A-201ENST00000355766 CLN3Q13286 438 aa9.52□□□□□ -0.89
VPS13A-201ENST00000355766 GAS6Q14393 721 aa9.52□□□□□ -0.89
VPS13A-201ENST00000355766 COL13A1Q5TAT6 717 aaPredicted RBP9.52□□□□□ -0.89
VPS13A-201ENST00000355766 DDX54Q8TDD1 881 aaKnown RBP9.52□□□□□ -0.89
VPS13A-201ENST00000355766 WDR90Q96KV7 1748 aa9.52□□□□□ -0.89
VPS13A-201ENST00000355766 CARD11Q9BXL7 1154 aa9.52□□□□□ -0.89
VPS13A-201ENST00000355766 GRIP2Q9C0E4 1043 aa9.52□□□□□ -0.89
VPS13A-201ENST00000355766 TOMM70O94826 608 aa9.51□□□□□ -0.89
VPS13A-201ENST00000355766 ARHGEF15O94989 841 aa9.51□□□□□ -0.89
VPS13A-201ENST00000355766 DBN1Q16643 649 aa9.51□□□□□ -0.89
VPS13A-201ENST00000355766 TRIM22Q8IYM9 498 aa9.51□□□□□ -0.89
VPS13A-201ENST00000355766 ZNF837Q96EG3 531 aaPredicted RBP9.51□□□□□ -0.89
VPS13A-201ENST00000355766 ARHGEF10LQ9HCE6 1279 aa9.51□□□□□ -0.89
VPS13A-201ENST00000355766 CEP126Q9P2H0 1117 aa9.51□□□□□ -0.89
VPS13A-201ENST00000355766 PRELPP51888 382 aa9.5□□□□□ -0.89
VPS13A-201ENST00000355766 RIPOR1Q6ZS17 1223 aa9.5□□□□□ -0.89
VPS13A-201ENST00000355766 JMYQ8N9B5 988 aa9.5□□□□□ -0.89
VPS13A-201ENST00000355766 FLAD1Q8NFF5 587 aa9.5□□□□□ -0.89
VPS13A-201ENST00000355766 CCDC85AQ96PX6 553 aaPredicted RBP9.5□□□□□ -0.89
VPS13A-201ENST00000355766 WWC3Q9ULE0 1092 aa9.5□□□□□ -0.89
VPS13A-201ENST00000355766 DYRK1BQ9Y463 629 aa9.5□□□□□ -0.89
VPS13A-201ENST00000355766 TOGARAM1Q9Y4F4 1720 aa9.5□□□□□ -0.89
VPS13A-201ENST00000355766 MEGF6O75095 1541 aa9.5□□□□□ -0.89
VPS13A-201ENST00000355766 CD163L1Q9NR16 1453 aa9.49□□□□□ -0.89
VPS13A-201ENST00000355766 NBPF10Q6P3W6 841 aaKnown RBP9.49□□□□□ -0.89
VPS13A-201ENST00000355766 NME9Q86XW9 330 aa9.49□□□□□ -0.89
VPS13A-201ENST00000355766 TNS4Q8IZW8 715 aa9.49□□□□□ -0.89
VPS13A-201ENST00000355766 NBPF15Q8N660 670 aa9.49□□□□□ -0.89
VPS13A-201ENST00000355766 KLRG1Q96E93 195 aa9.49□□□□□ -0.89
VPS13A-201ENST00000355766 GMCL1Q96IK5 515 aa9.49□□□□□ -0.89
VPS13A-201ENST00000355766 TBC1D2BQ9UPU7 963 aa9.49□□□□□ -0.89
VPS13A-201ENST00000355766 WASHC2AQ641Q2 1341 aa9.49□□□□□ -0.89
VPS13A-201ENST00000355766 GPR25O00155 361 aa9.48□□□□□ -0.89
VPS13A-201ENST00000355766 SRSF11Q05519 484 aaKnown RBP9.48□□□□□ -0.89
VPS13A-201ENST00000355766 LYPD4Q6UWN0 246 aa9.48□□□□□ -0.89
VPS13A-201ENST00000355766 SUGP2Q8IX01 1082 aaKnown RBP eCLIP9.48□□□□□ -0.89
VPS13A-201ENST00000355766 GAS2L1Q99501 681 aaPredicted RBP9.48□□□□□ -0.89
VPS13A-201ENST00000355766 RAB6BQ9NRW1 208 aa9.48□□□□□ -0.89
VPS13A-201ENST00000355766 C4BP0C0L5 1744 aa9.48□□□□□ -0.89
VPS13A-201ENST00000355766 NSD3Q9BZ95 1437 aa9.48□□□□□ -0.89
VPS13A-201ENST00000355766 PXDNLA1KZ92 1463 aa9.47□□□□□ -0.89
VPS13A-201ENST00000355766 SPATA31C2B4DYI2 1134 aa9.47□□□□□ -0.89
VPS13A-201ENST00000355766 RASSF7Q02833 373 aa9.47□□□□□ -0.89
VPS13A-201ENST00000355766 CDCA8Q53HL2 280 aa9.47□□□□□ -0.89
VPS13A-201ENST00000355766 PALLDQ8WX93 1383 aa9.47□□□□□ -0.89
VPS13A-201ENST00000355766 EDC4Q6P2E9 1401 aaKnown RBP9.47□□□□□ -0.89
VPS13A-201ENST00000355766 GNRH1P01148 92 aa9.46□□□□□ -0.9
VPS13A-201ENST00000355766 IL2RAP01589 272 aa9.46□□□□□ -0.9
VPS13A-201ENST00000355766 HMGB2P26583 209 aaKnown RBP9.46□□□□□ -0.9
VPS13A-201ENST00000355766 KCTD17Q8N5Z5 321 aa9.46□□□□□ -0.9
VPS13A-201ENST00000355766 ZCRB1Q8TBF4 217 aaKnown RBP9.46□□□□□ -0.9
VPS13A-201ENST00000355766 IP6K1Q92551 441 aa9.46□□□□□ -0.9
VPS13A-201ENST00000355766 GTPBP3Q969Y2 492 aaKnown RBP9.46□□□□□ -0.9
Retrieved 100 of 20,778 RNA–protein pairs in 19.4 ms