RNA–Protein interactions for RNA: ENST00000341372.7

TPM3-207, Transcript of tropomyosin 3, humanhuman

TSL 5 BASIC

Gene TPM3, Length 2,007 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TPM3-207ENST00000341372 SOGA3Q5TF21 947 aa13.03□□□□□ -0.32
TPM3-207ENST00000341372 RPGRQ92834 1020 aaKnown RBP13.03□□□□□ -0.32
TPM3-207ENST00000341372 FAM89AQ96GI7 184 aa13.03□□□□□ -0.32
TPM3-207ENST00000341372 NPDC1Q9NQX5 325 aaPredicted RBP13.03□□□□□ -0.32
TPM3-207ENST00000341372 CDHR2Q9BYE9 1310 aa13.03□□□□□ -0.32
TPM3-207ENST00000341372 LRRC37AA6NMS7 1700 aa13.03□□□□□ -0.32
TPM3-207ENST00000341372 SF3B3Q15393 1217 aaKnown RBP13.02□□□□□ -0.33
TPM3-207ENST00000341372 SSH1Q8WYL5 1049 aa13.02□□□□□ -0.33
TPM3-207ENST00000341372 PPP1R12CQ9BZL4 782 aa13.02□□□□□ -0.33
TPM3-207ENST00000341372 CDHR5Q9HBB8 845 aa13.02□□□□□ -0.33
TPM3-207ENST00000341372 CCDC88AQ3V6T2 1871 aa13.02□□□□□ -0.33
TPM3-207ENST00000341372 C21orf2O43822 256 aa13.01□□□□□ -0.33
TPM3-207ENST00000341372 LINS1Q8NG48 757 aa13.01□□□□□ -0.33
TPM3-207ENST00000341372 RBM17Q96I25 401 aaKnown RBP13.01□□□□□ -0.33
TPM3-207ENST00000341372 TIAM2Q8IVF5 1701 aa13.01□□□□□ -0.33
TPM3-207ENST00000341372 IRS4O14654 1257 aaPredicted RBP13.01□□□□□ -0.33
TPM3-207ENST00000341372 RASSF7Q02833 373 aa13.01□□□□□ -0.33
TPM3-207ENST00000341372 CWF19L2Q2TBE0 894 aaKnown RBP13.01□□□□□ -0.33
TPM3-207ENST00000341372 TMC2Q8TDI7 906 aa13.01□□□□□ -0.33
TPM3-207ENST00000341372 GNEQ9Y223 722 aaKnown RBP13.01□□□□□ -0.33
TPM3-207ENST00000341372 ABCC4O15439 1325 aa13.01□□□□□ -0.33
TPM3-207ENST00000341372 PTPRCP08575 1304 aa13.01□□□□□ -0.33
TPM3-207ENST00000341372 TAF1P21675 1872 aa13□□□□□ -0.33
TPM3-207ENST00000341372 CCDC93Q567U6 631 aa13□□□□□ -0.33
TPM3-207ENST00000341372 BEND3Q5T5X7 828 aa13□□□□□ -0.33
TPM3-207ENST00000341372 COL4A1P02462 1669 aa13□□□□□ -0.33
TPM3-207ENST00000341372 PRELPP51888 382 aa13□□□□□ -0.33
TPM3-207ENST00000341372 GCKRQ14397 625 aa13□□□□□ -0.33
TPM3-207ENST00000341372 CC2D2BQ6DHV5 1058 aa13□□□□□ -0.33
TPM3-207ENST00000341372 ZC3H4Q9UPT8 1303 aaKnown RBP12.99□□□□□ -0.33
TPM3-207ENST00000341372 F6X3S4 739 aa12.99□□□□□ -0.33
TPM3-207ENST00000341372 H7C1W4 665 aa12.99□□□□□ -0.33
TPM3-207ENST00000341372 PDE8AO60658 829 aa12.99□□□□□ -0.33
TPM3-207ENST00000341372 CASP7P55210 303 aa12.99□□□□□ -0.33
TPM3-207ENST00000341372 ZNF784Q8NCA9 323 aaPredicted RBP12.99□□□□□ -0.33
TPM3-207ENST00000341372 PPEF1O14829 653 aaPredicted RBP12.98□□□□□ -0.33
TPM3-207ENST00000341372 LMNB1P20700 586 aa12.98□□□□□ -0.33
TPM3-207ENST00000341372 GRAPQ13588 217 aa12.98□□□□□ -0.33
TPM3-207ENST00000341372 RTL5Q5HYW3 569 aaPredicted RBP12.98□□□□□ -0.33
TPM3-207ENST00000341372 C9orf131Q5VYM1 1079 aa12.98□□□□□ -0.33
TPM3-207ENST00000341372 GRAPLQ8TC17 118 aaPredicted RBP12.98□□□□□ -0.33
TPM3-207ENST00000341372 TAOK3Q9H2K8 898 aa12.98□□□□□ -0.33
TPM3-207ENST00000341372 FAM161AQ3B820 660 aa12.98□□□□□ -0.33
TPM3-207ENST00000341372 GRIPAP1Q4V328 841 aa12.98□□□□□ -0.33
TPM3-207ENST00000341372 PLA2G12BQ9BX93 195 aa12.98□□□□□ -0.33
TPM3-207ENST00000341372 LTBP1Q14766 1721 aa12.97□□□□□ -0.33
TPM3-207ENST00000341372 RTL9Q8NET4 1388 aa12.97□□□□□ -0.33
TPM3-207ENST00000341372 ALDH1L1O75891 902 aa12.97□□□□□ -0.33
TPM3-207ENST00000341372 BBOX1O75936 387 aa12.97□□□□□ -0.33
TPM3-207ENST00000341372 RARSP54136 660 aaKnown RBP12.97□□□□□ -0.33
TPM3-207ENST00000341372 OLFM4Q6UX06 510 aa12.97□□□□□ -0.33
TPM3-207ENST00000341372 DDX46Q7L014 1031 aaKnown RBP12.97□□□□□ -0.33
TPM3-207ENST00000341372 RTKN2Q8IZC4 609 aa12.97□□□□□ -0.33
TPM3-207ENST00000341372 PSMD1Q99460 953 aa12.97□□□□□ -0.33
TPM3-207ENST00000341372 BCL2L13Q9BXK5 485 aa12.97□□□□□ -0.33
TPM3-207ENST00000341372 SMC4Q9NTJ3 1288 aa12.97□□□□□ -0.33
TPM3-207ENST00000341372 FKBP4Q02790 459 aaKnown RBP eCLIP12.96□□□□□ -0.33
TPM3-207ENST00000341372 TMC4Q7Z404 712 aa12.96□□□□□ -0.33
TPM3-207ENST00000341372 RNF181Q9P0P0 153 aa12.96□□□□□ -0.33
TPM3-207ENST00000341372 ATP6V0A2Q9Y487 856 aa12.96□□□□□ -0.33
TPM3-207ENST00000341372 CTSWP56202 376 aa12.96□□□□□ -0.34
TPM3-207ENST00000341372 UBE3BQ7Z3V4 1068 aa12.96□□□□□ -0.34
TPM3-207ENST00000341372 TMEM106CQ9BVX2 250 aa12.96□□□□□ -0.34
TPM3-207ENST00000341372 DUOX1Q9NRD9 1551 aa12.96□□□□□ -0.34
TPM3-207ENST00000341372 PALM3A6NDB9 673 aaPredicted RBP12.95□□□□□ -0.34
TPM3-207ENST00000341372 CCDC152Q4G0S7 254 aa12.95□□□□□ -0.34
TPM3-207ENST00000341372 DNAJC14Q6Y2X3 702 aaPredicted RBP12.95□□□□□ -0.34
TPM3-207ENST00000341372 SLC51AQ86UW1 340 aa12.95□□□□□ -0.34
TPM3-207ENST00000341372 SP8Q8IXZ3 490 aa12.95□□□□□ -0.34
TPM3-207ENST00000341372 JARID2Q92833 1246 aaPredicted RBP12.95□□□□□ -0.34
TPM3-207ENST00000341372 KIF16BQ96L93 1317 aa12.95□□□□□ -0.34
TPM3-207ENST00000341372 CENPBP07199 599 aaPredicted RBP12.95□□□□□ -0.34
TPM3-207ENST00000341372 CELF1Q92879 486 aaKnown RBP12.95□□□□□ -0.34
TPM3-207ENST00000341372 SRCIN1Q9C0H9 1055 aa12.95□□□□□ -0.34
TPM3-207ENST00000341372 UTYO14607 1347 aa12.94□□□□□ -0.34
TPM3-207ENST00000341372 GRM8O00222 908 aa12.94□□□□□ -0.34
TPM3-207ENST00000341372 LMOD1P29536 600 aaPredicted RBP12.94□□□□□ -0.34
TPM3-207ENST00000341372 TTLL11Q8NHH1 800 aa12.94□□□□□ -0.34
TPM3-207ENST00000341372 PRM3Q9NNZ6 103 aa12.94□□□□□ -0.34
TPM3-207ENST00000341372 RTFDC1Q9BY42 306 aaPredicted RBP12.93□□□□□ -0.34
TPM3-207ENST00000341372 SPEF2Q9C093 1822 aa12.93□□□□□ -0.34
TPM3-207ENST00000341372 CSF1RP07333 972 aa12.93□□□□□ -0.34
TPM3-207ENST00000341372 NOM1Q5C9Z4 860 aaKnown RBP12.93□□□□□ -0.34
TPM3-207ENST00000341372 SLC4A10Q6U841 1118 aa12.93□□□□□ -0.34
TPM3-207ENST00000341372 METTL3Q86U44 580 aaKnown RBP12.93□□□□□ -0.34
TPM3-207ENST00000341372 ARHGAP45Q92619 1136 aa12.93□□□□□ -0.34
TPM3-207ENST00000341372 SEC31BQ9NQW1 1179 aa12.93□□□□□ -0.34
TPM3-207ENST00000341372 COL4A5P29400 1685 aa12.93□□□□□ -0.34
TPM3-207ENST00000341372 IARSP41252 1262 aaKnown RBP12.92□□□□□ -0.34
TPM3-207ENST00000341372 RPS8P62241 208 aaKnown RBP12.92□□□□□ -0.34
TPM3-207ENST00000341372 API5Q9BZZ5 524 aaKnown RBP12.92□□□□□ -0.34
TPM3-207ENST00000341372 NOB1Q9ULX3 412 aaKnown RBP12.92□□□□□ -0.34
TPM3-207ENST00000341372 WDR90Q96KV7 1748 aa12.91□□□□□ -0.34
TPM3-207ENST00000341372 C2orf72A6NCS6 295 aa12.91□□□□□ -0.34
TPM3-207ENST00000341372 SMARCA5O60264 1052 aaPredicted RBP12.91□□□□□ -0.34
TPM3-207ENST00000341372 ZNF16P17020 682 aaPredicted RBP12.91□□□□□ -0.34
TPM3-207ENST00000341372 MICALL2Q8IY33 904 aa12.91□□□□□ -0.34
TPM3-207ENST00000341372 VPS33BQ9H267 617 aa12.91□□□□□ -0.34
TPM3-207ENST00000341372 GREM2Q9H772 168 aa12.91□□□□□ -0.34
TPM3-207ENST00000341372 ATG7O95352 703 aa12.91□□□□□ -0.34
Retrieved 100 of 20,778 RNA–protein pairs in 19.2 ms