RNA–Protein interactions for RNA: ENST00000335508.10

SF3B1-201, Transcript of splicing factor 3b subunit 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SF3B1, Length 6,526 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3B1-201ENST00000335508 NLRP10Q86W26 655 aa8.01□□□□□ -1.13
SF3B1-201ENST00000335508 CEMIPQ8WUJ3 1361 aa8.01□□□□□ -1.13
SF3B1-201ENST00000335508 MAP4K4O95819 1239 aaPredicted RBP8.01□□□□□ -1.13
SF3B1-201ENST00000335508 CCDC148Q8NFR7 591 aa8.01□□□□□ -1.13
SF3B1-201ENST00000335508 PYM1Q9BRP8 204 aaKnown RBP8.01□□□□□ -1.13
SF3B1-201ENST00000335508 LEMD3Q9Y2U8 911 aa8.01□□□□□ -1.13
SF3B1-201ENST00000335508 CDC42BPGQ6DT37 1551 aa8.01□□□□□ -1.13
SF3B1-201ENST00000335508 FOXD4L6Q3SYB3 417 aaPredicted RBP8.01□□□□□ -1.13
SF3B1-201ENST00000335508 FOXD4L3Q6VB84 417 aaPredicted RBP8.01□□□□□ -1.13
SF3B1-201ENST00000335508 TMEM87BQ96K49 555 aa8.01□□□□□ -1.13
SF3B1-201ENST00000335508 SEC63Q9UGP8 760 aaKnown RBP8.01□□□□□ -1.13
SF3B1-201ENST00000335508 GOLGA8BA8MQT2 603 aa8.01□□□□□ -1.13
SF3B1-201ENST00000335508 ZBTB43O43298 467 aa8.01□□□□□ -1.13
SF3B1-201ENST00000335508 CTSWP56202 376 aa8.01□□□□□ -1.13
SF3B1-201ENST00000335508 UBE3CQ15386 1083 aa8.01□□□□□ -1.13
SF3B1-201ENST00000335508 RC3H1Q5TC82 1133 aaKnown RBP8.01□□□□□ -1.13
SF3B1-201ENST00000335508 SSH2Q76I76 1423 aa8□□□□□ -1.13
SF3B1-201ENST00000335508 EIF5P55010 431 aaKnown RBP8□□□□□ -1.13
SF3B1-201ENST00000335508 TMEM67Q5HYA8 995 aa8□□□□□ -1.13
SF3B1-201ENST00000335508 IBTKQ9P2D0 1353 aaPredicted RBP8□□□□□ -1.13
SF3B1-201ENST00000335508 CD163L1Q9NR16 1453 aa8□□□□□ -1.13
SF3B1-201ENST00000335508 CCDC194A0A1B0GVG4 234 aa8□□□□□ -1.13
SF3B1-201ENST00000335508 GOLGA8AA7E2F4 631 aa8□□□□□ -1.13
SF3B1-201ENST00000335508 ATP2B4P23634 1241 aa8□□□□□ -1.13
SF3B1-201ENST00000335508 WTAPQ15007 396 aa8□□□□□ -1.13
SF3B1-201ENST00000335508 XAGE2Q96GT9 111 aa8□□□□□ -1.13
SF3B1-201ENST00000335508 KDM4FA0A1W2PPD8 638 aa8□□□□□ -1.13
SF3B1-201ENST00000335508 SPATA32Q96LK8 384 aa8□□□□□ -1.13
SF3B1-201ENST00000335508 CDHR2Q9BYE9 1310 aa8□□□□□ -1.13
SF3B1-201ENST00000335508 PCP11498 1178 aaKnown RBP8□□□□□ -1.13
SF3B1-201ENST00000335508 CALML3P27482 149 aa8□□□□□ -1.13
SF3B1-201ENST00000335508 DPP8Q6V1X1 898 aaPredicted RBP8□□□□□ -1.13
SF3B1-201ENST00000335508 MST1RQ04912 1400 aa8□□□□□ -1.13
SF3B1-201ENST00000335508 CCDC192P0DO97 292 aa7.99□□□□□ -1.13
SF3B1-201ENST00000335508 CEP57L1Q8IYX8 460 aa7.99□□□□□ -1.13
SF3B1-201ENST00000335508 FEZ1Q99689 392 aa7.99□□□□□ -1.13
SF3B1-201ENST00000335508 SH2D4AQ9H788 454 aa7.99□□□□□ -1.13
SF3B1-201ENST00000335508 DEPDC5O75140 1603 aa7.99□□□□□ -1.13
SF3B1-201ENST00000335508 UFL1O94874 794 aa7.99□□□□□ -1.13
SF3B1-201ENST00000335508 PROSER3Q2NL68 480 aa7.99□□□□□ -1.13
SF3B1-201ENST00000335508 GRIPAP1Q4V328 841 aa7.99□□□□□ -1.13
SF3B1-201ENST00000335508 USPL1Q5W0Q7 1092 aa7.99□□□□□ -1.13
SF3B1-201ENST00000335508 MPNDQ8N594 471 aa7.99□□□□□ -1.13
SF3B1-201ENST00000335508 GLT8D2Q9H1C3 349 aa7.99□□□□□ -1.13
SF3B1-201ENST00000335508 STIM1Q13586 685 aa7.99□□□□□ -1.13
SF3B1-201ENST00000335508 SLC16A10Q8TF71 515 aa7.99□□□□□ -1.13
SF3B1-201ENST00000335508 KIAA1210Q9ULL0 1709 aa7.99□□□□□ -1.13
SF3B1-201ENST00000335508 PIK3C2BO00750 1634 aa7.99□□□□□ -1.13
SF3B1-201ENST00000335508 KIF20AO95235 890 aa7.99□□□□□ -1.13
SF3B1-201ENST00000335508 C8orf34Q49A92 452 aa7.99□□□□□ -1.13
SF3B1-201ENST00000335508 ATL3Q6DD88 541 aa7.99□□□□□ -1.13
SF3B1-201ENST00000335508 OLFM4Q6UX06 510 aa7.99□□□□□ -1.13
SF3B1-201ENST00000335508 CCDC83Q8IWF9 413 aa7.99□□□□□ -1.13
SF3B1-201ENST00000335508 DACH1Q9UI36 760 aa7.99□□□□□ -1.13
SF3B1-201ENST00000335508 TNNI2P48788 182 aa7.99□□□□□ -1.13
SF3B1-201ENST00000335508 CDK5RAP3Q96JB5 506 aa7.99□□□□□ -1.13
SF3B1-201ENST00000335508 SLC4A4Q9Y6R1 1079 aa7.99□□□□□ -1.13
SF3B1-201ENST00000335508 PRPF40AO75400 957 aaKnown RBP7.98□□□□□ -1.13
SF3B1-201ENST00000335508 NF2P35240 595 aa7.98□□□□□ -1.13
SF3B1-201ENST00000335508 FERMT3Q86UX7 667 aa7.98□□□□□ -1.13
SF3B1-201ENST00000335508 ISCA1Q9BUE6 129 aa7.98□□□□□ -1.13
SF3B1-201ENST00000335508 DSCC1Q9BVC3 393 aa7.98□□□□□ -1.13
SF3B1-201ENST00000335508 KAT14Q9H8E8 782 aa7.98□□□□□ -1.13
SF3B1-201ENST00000335508 IQSEC3Q9UPP2 1182 aaPredicted RBP7.98□□□□□ -1.13
SF3B1-201ENST00000335508 CTAGE5O15320 804 aa7.98□□□□□ -1.13
SF3B1-201ENST00000335508 NMIQ13287 307 aaPredicted RBP7.98□□□□□ -1.13
SF3B1-201ENST00000335508 TNFAIP1Q13829 316 aa7.98□□□□□ -1.13
SF3B1-201ENST00000335508 MICU3Q86XE3 530 aa7.98□□□□□ -1.13
SF3B1-201ENST00000335508 TMX3Q96JJ7 454 aa7.98□□□□□ -1.13
SF3B1-201ENST00000335508 KLF18A0A0U1RQI7 1052 aa7.98□□□□□ -1.13
SF3B1-201ENST00000335508 DDX19AQ9NUU7 478 aaKnown RBP7.98□□□□□ -1.13
SF3B1-201ENST00000335508 STX6O43752 255 aa7.98□□□□□ -1.13
SF3B1-201ENST00000335508 IGKV5-2P06315 115 aa7.98□□□□□ -1.13
SF3B1-201ENST00000335508 METAP2P50579 478 aaKnown RBP eCLIP7.98□□□□□ -1.13
SF3B1-201ENST00000335508 TSHZ3Q63HK5 1081 aa7.98□□□□□ -1.13
SF3B1-201ENST00000335508 MCM9Q9NXL9 1143 aa7.98□□□□□ -1.13
SF3B1-201ENST00000335508 STK3Q13188 491 aa7.98□□□□□ -1.13
SF3B1-201ENST00000335508 C16orf71Q8IYS4 520 aaPredicted RBP7.98□□□□□ -1.13
SF3B1-201ENST00000335508 TTLL11Q8NHH1 800 aa7.98□□□□□ -1.13
SF3B1-201ENST00000335508 GTPBP4Q9BZE4 634 aaKnown RBP7.98□□□□□ -1.13
SF3B1-201ENST00000335508 R3HCC1Q9Y3T6 440 aaKnown RBP7.98□□□□□ -1.13
SF3B1-201ENST00000335508 MAGEB6P1A0A0J9YX57 407 aa7.97□□□□□ -1.13
SF3B1-201ENST00000335508 SSFA2P28290 1259 aa7.97□□□□□ -1.13
SF3B1-201ENST00000335508 POLA2Q14181 598 aa7.97□□□□□ -1.13
SF3B1-201ENST00000335508 MTA3Q9BTC8 594 aa7.97□□□□□ -1.13
SF3B1-201ENST00000335508 USP26Q9BXU7 913 aa7.97□□□□□ -1.13
SF3B1-201ENST00000335508 PNMA2Q9UL42 364 aa7.97□□□□□ -1.13
SF3B1-201ENST00000335508 SERPINB2P05120 415 aa7.97□□□□□ -1.13
SF3B1-201ENST00000335508 XDHP47989 1333 aa7.97□□□□□ -1.13
SF3B1-201ENST00000335508 LARGE2Q8N3Y3 721 aa7.97□□□□□ -1.13
SF3B1-201ENST00000335508 MTMR7Q9Y216 660 aa7.97□□□□□ -1.13
SF3B1-201ENST00000335508 ATP10DQ9P241 1426 aa7.97□□□□□ -1.13
SF3B1-201ENST00000335508 KLHDC4Q8TBB5 520 aa7.97□□□□□ -1.13
SF3B1-201ENST00000335508 MROH1Q8NDA8 1641 aa7.97□□□□□ -1.13
SF3B1-201ENST00000335508 SPATA31A1Q5TZJ5 1347 aa7.97□□□□□ -1.13
SF3B1-201ENST00000335508 CYP19A1P11511 503 aaPredicted RBP7.97□□□□□ -1.13
SF3B1-201ENST00000335508 HAND2P61296 217 aa7.97□□□□□ -1.13
SF3B1-201ENST00000335508 PTPN12Q05209 780 aaKnown RBP7.97□□□□□ -1.13
SF3B1-201ENST00000335508 TEX11Q8IYF3 940 aa7.97□□□□□ -1.13
SF3B1-201ENST00000335508 UBE2Q2Q8WVN8 375 aa7.97□□□□□ -1.13
Retrieved 100 of 20,778 RNA–protein pairs in 36.9 ms