RNA–Protein interactions for RNA: ENST00000329399.6

PDLIM1-201, Transcript of PDZ and LIM domain 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene PDLIM1, Length 1,452 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM1-201ENST00000329399 LRRFIP2Q9Y608 721 aaKnown RBP20.35■□□□□ 0.85
PDLIM1-201ENST00000329399 EYA3Q99504 573 aa20.34■□□□□ 0.85
PDLIM1-201ENST00000329399 ZBTB12Q9Y330 459 aaPredicted RBP20.34■□□□□ 0.85
PDLIM1-201ENST00000329399 PSMD14O00487 310 aa20.33■□□□□ 0.85
PDLIM1-201ENST00000329399 UBTFL1P0CB47 393 aaPredicted RBP20.33■□□□□ 0.85
PDLIM1-201ENST00000329399 CIAPIN1Q6FI81 312 aa20.33■□□□□ 0.85
PDLIM1-201ENST00000329399 RBM46Q8TBY0 533 aaKnown RBP20.33■□□□□ 0.85
PDLIM1-201ENST00000329399 RIPOR2Q9Y4F9 1068 aa20.33■□□□□ 0.85
PDLIM1-201ENST00000329399 SCN9AQ15858 1988 aa20.33■□□□□ 0.84
PDLIM1-201ENST00000329399 IRS2Q9Y4H2 1338 aa20.33■□□□□ 0.84
PDLIM1-201ENST00000329399 GMPSP49915 693 aaPredicted RBP20.32■□□□□ 0.84
PDLIM1-201ENST00000329399 TAF7LQ5H9L4 462 aa20.32■□□□□ 0.84
PDLIM1-201ENST00000329399 C16orf71Q8IYS4 520 aaPredicted RBP20.32■□□□□ 0.84
PDLIM1-201ENST00000329399 PCNTO95613 3336 aa20.32■□□□□ 0.84
PDLIM1-201ENST00000329399 ZNF804BA4D1E1 1349 aa20.32■□□□□ 0.84
PDLIM1-201ENST00000329399 ANKRD2Q9GZV1 360 aa20.31■□□□□ 0.84
PDLIM1-201ENST00000329399 CNNM1Q9NRU3 951 aa20.31■□□□□ 0.84
PDLIM1-201ENST00000329399 HACL1Q9UJ83 578 aa20.31■□□□□ 0.84
PDLIM1-201ENST00000329399 LEMD3Q9Y2U8 911 aa20.31■□□□□ 0.84
PDLIM1-201ENST00000329399 EPHX2P34913 555 aa20.3■□□□□ 0.84
PDLIM1-201ENST00000329399 NUCB1Q02818 461 aa20.3■□□□□ 0.84
PDLIM1-201ENST00000329399 PTPN12Q05209 780 aaKnown RBP20.3■□□□□ 0.84
PDLIM1-201ENST00000329399 DCTPP1Q9H773 170 aa20.3■□□□□ 0.84
PDLIM1-201ENST00000329399 IQCA1LA6NCM1 817 aa20.29■□□□□ 0.84
PDLIM1-201ENST00000329399 TNIP1Q15025 636 aa20.29■□□□□ 0.84
PDLIM1-201ENST00000329399 EAPPQ56P03 285 aaPredicted RBP20.29■□□□□ 0.84
PDLIM1-201ENST00000329399 CEP85Q6P2H3 762 aa20.29■□□□□ 0.84
PDLIM1-201ENST00000329399 MXD3Q9BW11 206 aa20.29■□□□□ 0.84
PDLIM1-201ENST00000329399 GPRC5DQ9NZD1 345 aa20.29■□□□□ 0.84
PDLIM1-201ENST00000329399 MED23Q9ULK4 1368 aa20.29■□□□□ 0.84
PDLIM1-201ENST00000329399 VIL1P09327 827 aaKnown RBP20.28■□□□□ 0.84
PDLIM1-201ENST00000329399 PA2G4Q9UQ80 394 aaKnown RBP20.28■□□□□ 0.84
PDLIM1-201ENST00000329399 EGFRP00533 1210 aa20.27■□□□□ 0.84
PDLIM1-201ENST00000329399 ATG9AQ7Z3C6 839 aa20.27■□□□□ 0.84
PDLIM1-201ENST00000329399 SCN4AP35499 1836 aa20.27■□□□□ 0.83
PDLIM1-201ENST00000329399 G3V3G9 751 aa20.26■□□□□ 0.83
PDLIM1-201ENST00000329399 HIRAP54198 1017 aaPredicted RBP20.26■□□□□ 0.83
PDLIM1-201ENST00000329399 HTRA3P83110 453 aa20.26■□□□□ 0.83
PDLIM1-201ENST00000329399 DCAF8Q5TAQ9 597 aa20.26■□□□□ 0.83
PDLIM1-201ENST00000329399 SIRT2Q8IXJ6 389 aa20.26■□□□□ 0.83
PDLIM1-201ENST00000329399 VGLL2Q8N8G2 317 aa20.26■□□□□ 0.83
PDLIM1-201ENST00000329399 ZBTB47Q9UFB7 747 aaPredicted RBP20.26■□□□□ 0.83
PDLIM1-201ENST00000329399 CNOT7Q9UIV1 285 aaKnown RBP20.26■□□□□ 0.83
PDLIM1-201ENST00000329399 KCNJ4P48050 445 aa20.25■□□□□ 0.83
PDLIM1-201ENST00000329399 ATP8B2P98198 1209 aa20.25■□□□□ 0.83
PDLIM1-201ENST00000329399 SMC1BQ8NDV3 1235 aa20.25■□□□□ 0.83
PDLIM1-201ENST00000329399 SIL1Q9H173 461 aa20.25■□□□□ 0.83
PDLIM1-201ENST00000329399 A0A1B0GUL6 1792 aa20.25■□□□□ 0.83
PDLIM1-201ENST00000329399 HSPA6P17066 643 aa20.24■□□□□ 0.83
PDLIM1-201ENST00000329399 FSTL1Q12841 308 aa20.24■□□□□ 0.83
PDLIM1-201ENST00000329399 PODNQ7Z5L7 613 aa20.24■□□□□ 0.83
PDLIM1-201ENST00000329399 CHD1LQ86WJ1 897 aa20.24■□□□□ 0.83
PDLIM1-201ENST00000329399 TRPM4Q8TD43 1214 aa20.24■□□□□ 0.83
PDLIM1-201ENST00000329399 C1orf115Q9H7X2 142 aa20.24■□□□□ 0.83
PDLIM1-201ENST00000329399 PNMA6EA0A0J9YXQ4 647 aa20.24■□□□□ 0.83
PDLIM1-201ENST00000329399 EYA2O00167 538 aa20.24■□□□□ 0.83
PDLIM1-201ENST00000329399 LMOD1P29536 600 aaPredicted RBP20.24■□□□□ 0.83
PDLIM1-201ENST00000329399 MAP1SQ66K74 1059 aaPredicted RBP20.24■□□□□ 0.83
PDLIM1-201ENST00000329399 CHADLQ6NUI6 762 aa20.24■□□□□ 0.83
PDLIM1-201ENST00000329399 C15orf52Q6ZUT6 534 aaKnown RBP20.24■□□□□ 0.83
PDLIM1-201ENST00000329399 SAMD7Q7Z3H4 446 aa20.24■□□□□ 0.83
PDLIM1-201ENST00000329399 MICALL2Q8IY33 904 aa20.24■□□□□ 0.83
PDLIM1-201ENST00000329399 GMLQ99445 158 aa20.24■□□□□ 0.83
PDLIM1-201ENST00000329399 COA1Q9GZY4 146 aa20.24■□□□□ 0.83
PDLIM1-201ENST00000329399 CD209Q9NNX6 404 aa20.24■□□□□ 0.83
PDLIM1-201ENST00000329399 GYG1P46976 350 aa20.23■□□□□ 0.83
PDLIM1-201ENST00000329399 RGS3P49796 1198 aa20.23■□□□□ 0.83
PDLIM1-201ENST00000329399 FMR1Q06787 632 aaKnown RBP eCLIP20.23■□□□□ 0.83
PDLIM1-201ENST00000329399 METTL24Q5JXM2 366 aa20.23■□□□□ 0.83
PDLIM1-201ENST00000329399 LDHDQ86WU2 507 aa20.23■□□□□ 0.83
PDLIM1-201ENST00000329399 BACH2Q9BYV9 841 aa20.23■□□□□ 0.83
PDLIM1-201ENST00000329399 CLEC11AQ9Y240 323 aa20.23■□□□□ 0.83
PDLIM1-201ENST00000329399 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP20.23■□□□□ 0.83
PDLIM1-201ENST00000329399 MROH5Q6ZUA9 1318 aa20.22■□□□□ 0.83
PDLIM1-201ENST00000329399 USP17L3A6NCW0 530 aa20.22■□□□□ 0.83
PDLIM1-201ENST00000329399 USP17L4A6NCW7 530 aa20.22■□□□□ 0.83
PDLIM1-201ENST00000329399 ITGBL1O95965 494 aaPredicted RBP20.22■□□□□ 0.83
PDLIM1-201ENST00000329399 PDE4AP27815 886 aa20.22■□□□□ 0.83
PDLIM1-201ENST00000329399 DACT2Q5SW24 774 aa20.22■□□□□ 0.83
PDLIM1-201ENST00000329399 RSBN1LQ6PCB5 846 aaPredicted RBP20.22■□□□□ 0.83
PDLIM1-201ENST00000329399 USP17L1Q7RTZ2 530 aa20.22■□□□□ 0.83
PDLIM1-201ENST00000329399 DPF2Q92785 391 aa20.22■□□□□ 0.83
PDLIM1-201ENST00000329399 FAM84BQ96KN1 310 aaPredicted RBP20.22■□□□□ 0.83
PDLIM1-201ENST00000329399 RBM19Q9Y4C8 960 aaKnown RBP20.22■□□□□ 0.83
PDLIM1-201ENST00000329399 ADAMTSL1Q8N6G6 1762 aa20.21■□□□□ 0.83
PDLIM1-201ENST00000329399 SRGAP3O43295 1099 aa20.21■□□□□ 0.83
PDLIM1-201ENST00000329399 PDE8BO95263 885 aa20.21■□□□□ 0.83
PDLIM1-201ENST00000329399 MTX1Q13505 466 aa20.21■□□□□ 0.83
PDLIM1-201ENST00000329399 UBE4AQ14139 1066 aa20.21■□□□□ 0.83
PDLIM1-201ENST00000329399 PNMA8AQ86V59 439 aaPredicted RBP20.21■□□□□ 0.83
PDLIM1-201ENST00000329399 ADARB2Q9NS39 739 aaKnown RBP20.21■□□□□ 0.83
PDLIM1-201ENST00000329399 JAG2Q9Y219 1238 aa20.21■□□□□ 0.83
PDLIM1-201ENST00000329399 FGFR2P21802 821 aa20.2■□□□□ 0.82
PDLIM1-201ENST00000329399 GTF2IP78347 998 aa20.2■□□□□ 0.82
PDLIM1-201ENST00000329399 TBC1D10BQ4KMP7 808 aaPredicted RBP20.2■□□□□ 0.82
PDLIM1-201ENST00000329399 HSP90AB4PQ58FF6 505 aa20.19■□□□□ 0.82
PDLIM1-201ENST00000329399 RBM26Q5T8P6 1007 aaKnown RBP20.19■□□□□ 0.82
PDLIM1-201ENST00000329399 ANKRD45Q5TZF3 282 aa20.19■□□□□ 0.82
PDLIM1-201ENST00000329399 TTLL5Q6EMB2 1281 aa20.19■□□□□ 0.82
PDLIM1-201ENST00000329399 DLK2Q6UY11 383 aa20.19■□□□□ 0.82
Retrieved 100 of 20,778 RNA–protein pairs in 13 ms