RNA–Protein interactions for RNA: ENST00000325307.11

HMGB3-201, Transcript of high mobility group box 3, humanhuman

APPRIS P2 TSL 1 (best) BASIC

Gene HMGB3, Length 3,560 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB3-201ENST00000325307 UBE4AQ14139 1066 aa12.17□□□□□ -0.46
HMGB3-201ENST00000325307 SLC51AQ86UW1 340 aa12.17□□□□□ -0.46
HMGB3-201ENST00000325307 EVI5LQ96CN4 794 aa12.17□□□□□ -0.46
HMGB3-201ENST00000325307 NRXN2Q9P2S2 1712 aa12.17□□□□□ -0.46
HMGB3-201ENST00000325307 WTIPA6NIX2 430 aaPredicted RBP12.17□□□□□ -0.46
HMGB3-201ENST00000325307 PHKA1P46020 1223 aa12.17□□□□□ -0.46
HMGB3-201ENST00000325307 CCDC102BQ68D86 513 aa12.17□□□□□ -0.46
HMGB3-201ENST00000325307 EDC3Q96F86 508 aaKnown RBP12.17□□□□□ -0.46
HMGB3-201ENST00000325307 FSD1Q9BTV5 496 aa12.17□□□□□ -0.46
HMGB3-201ENST00000325307 UPF2Q9HAU5 1272 aaKnown RBP12.17□□□□□ -0.46
HMGB3-201ENST00000325307 HAUS7Q99871 368 aa12.17□□□□□ -0.46
HMGB3-201ENST00000325307 GOLIM4O00461 696 aa12.16□□□□□ -0.46
HMGB3-201ENST00000325307 BCAMP50895 628 aa12.16□□□□□ -0.46
HMGB3-201ENST00000325307 CAVIN4Q5BKX8 364 aa12.16□□□□□ -0.46
HMGB3-201ENST00000325307 ZNF219Q9P2Y4 722 aaPredicted RBP12.16□□□□□ -0.46
HMGB3-201ENST00000325307 ANKRD31Q8N7Z5 1873 aa12.16□□□□□ -0.46
HMGB3-201ENST00000325307 ZNF804BA4D1E1 1349 aa12.16□□□□□ -0.46
HMGB3-201ENST00000325307 XDHP47989 1333 aa12.16□□□□□ -0.46
HMGB3-201ENST00000325307 GYG1P46976 350 aa12.15□□□□□ -0.46
HMGB3-201ENST00000325307 TMC4Q7Z404 712 aa12.15□□□□□ -0.46
HMGB3-201ENST00000325307 ZMYND15Q9H091 742 aa12.15□□□□□ -0.46
HMGB3-201ENST00000325307 DIAPH3Q9NSV4 1193 aa12.15□□□□□ -0.46
HMGB3-201ENST00000325307 FRAT2O75474 233 aaPredicted RBP12.15□□□□□ -0.46
HMGB3-201ENST00000325307 UFL1O94874 794 aa12.15□□□□□ -0.46
HMGB3-201ENST00000325307 UQCRFS1P1P0C7P4 283 aa12.15□□□□□ -0.46
HMGB3-201ENST00000325307 GPSM2P81274 684 aa12.15□□□□□ -0.46
HMGB3-201ENST00000325307 PAG1Q9NWQ8 432 aa12.15□□□□□ -0.46
HMGB3-201ENST00000325307 IQSEC3Q9UPP2 1182 aaPredicted RBP12.15□□□□□ -0.46
HMGB3-201ENST00000325307 STYK1Q6J9G0 422 aa12.15□□□□□ -0.46
HMGB3-201ENST00000325307 PI16Q6UXB8 463 aa12.15□□□□□ -0.46
HMGB3-201ENST00000325307 CNKSR1Q969H4 720 aa12.15□□□□□ -0.46
HMGB3-201ENST00000325307 GNL3LQ9NVN8 582 aaKnown RBP12.15□□□□□ -0.46
HMGB3-201ENST00000325307 GGA1Q9UJY5 639 aa12.15□□□□□ -0.46
HMGB3-201ENST00000325307 C6orf229H3BNL8 230 aa12.14□□□□□ -0.47
HMGB3-201ENST00000325307 SCARF1Q14162 830 aa12.14□□□□□ -0.47
HMGB3-201ENST00000325307 LEMD3Q9Y2U8 911 aa12.14□□□□□ -0.47
HMGB3-201ENST00000325307 ATP6V0A2Q9Y487 856 aa12.14□□□□□ -0.47
HMGB3-201ENST00000325307 CHMLP26374 656 aa12.14□□□□□ -0.47
HMGB3-201ENST00000325307 PRPF40BQ6NWY9 871 aaKnown RBP12.14□□□□□ -0.47
HMGB3-201ENST00000325307 SP8Q8IXZ3 490 aa12.14□□□□□ -0.47
HMGB3-201ENST00000325307 KLRK1P26718 216 aa12.14□□□□□ -0.47
HMGB3-201ENST00000325307 MCAMP43121 646 aa12.14□□□□□ -0.47
HMGB3-201ENST00000325307 ZAP70P43403 619 aa12.14□□□□□ -0.47
HMGB3-201ENST00000325307 OLFM4Q6UX06 510 aa12.14□□□□□ -0.47
HMGB3-201ENST00000325307 A0A0G2JLW4 131 aa12.13□□□□□ -0.47
HMGB3-201ENST00000325307 PPIL4Q8WUA2 492 aaKnown RBP eCLIP12.13□□□□□ -0.47
HMGB3-201ENST00000325307 GPR101Q96P66 508 aaPredicted RBP12.13□□□□□ -0.47
HMGB3-201ENST00000325307 C10orf71Q711Q0 1435 aa12.13□□□□□ -0.47
HMGB3-201ENST00000325307 ATP2B4P23634 1241 aa12.13□□□□□ -0.47
HMGB3-201ENST00000325307 CWC27Q6UX04 472 aaKnown RBP12.13□□□□□ -0.47
HMGB3-201ENST00000325307 ANTXR1Q9H6X2 564 aa12.13□□□□□ -0.47
HMGB3-201ENST00000325307 WWC3Q9ULE0 1092 aa12.13□□□□□ -0.47
HMGB3-201ENST00000325307 DPEP1P16444 411 aa12.12□□□□□ -0.47
HMGB3-201ENST00000325307 ARID4AP29374 1257 aaPredicted RBP12.12□□□□□ -0.47
HMGB3-201ENST00000325307 HIBADHP31937 336 aaKnown RBP12.12□□□□□ -0.47
HMGB3-201ENST00000325307 RASGRF1Q13972 1273 aa12.12□□□□□ -0.47
HMGB3-201ENST00000325307 DPP8Q6V1X1 898 aaPredicted RBP12.12□□□□□ -0.47
HMGB3-201ENST00000325307 MPNDQ8N594 471 aa12.12□□□□□ -0.47
HMGB3-201ENST00000325307 HIP1O00291 1037 aa12.12□□□□□ -0.47
HMGB3-201ENST00000325307 SPATA5Q8NB90 893 aa12.12□□□□□ -0.47
HMGB3-201ENST00000325307 ZNF512BQ96KM6 892 aaPredicted RBP12.12□□□□□ -0.47
HMGB3-201ENST00000325307 FAM84BQ96KN1 310 aaPredicted RBP12.12□□□□□ -0.47
HMGB3-201ENST00000325307 COL11A2P13942 1736 aaPredicted RBP12.12□□□□□ -0.47
HMGB3-201ENST00000325307 KBTBD3Q8NAB2 608 aa12.12□□□□□ -0.47
HMGB3-201ENST00000325307 RUFY2Q8WXA3 655 aa12.12□□□□□ -0.47
HMGB3-201ENST00000325307 HMG20BQ9P0W2 317 aa12.12□□□□□ -0.47
HMGB3-201ENST00000325307 SLC4A3P48751 1232 aa12.11□□□□□ -0.47
HMGB3-201ENST00000325307 TXNRD3Q86VQ6 643 aa12.11□□□□□ -0.47
HMGB3-201ENST00000325307 ESYT1Q9BSJ8 1104 aa12.11□□□□□ -0.47
HMGB3-201ENST00000325307 TTLL6Q8N841 843 aa12.11□□□□□ -0.47
HMGB3-201ENST00000325307 TBC1D16Q8TBP0 767 aa12.11□□□□□ -0.47
HMGB3-201ENST00000325307 POLLQ9UGP5 575 aa12.11□□□□□ -0.47
HMGB3-201ENST00000325307 IDH1O75874 414 aaKnown RBP12.1□□□□□ -0.47
HMGB3-201ENST00000325307 REC8O95072 547 aa12.1□□□□□ -0.47
HMGB3-201ENST00000325307 TTF1Q15361 905 aaPredicted RBP12.1□□□□□ -0.47
HMGB3-201ENST00000325307 ZNF804AQ7Z570 1209 aa12.1□□□□□ -0.47
HMGB3-201ENST00000325307 RIMBP2O15034 1052 aa12.1□□□□□ -0.47
HMGB3-201ENST00000325307 CHAF1AQ13111 956 aaPredicted RBP12.1□□□□□ -0.47
HMGB3-201ENST00000325307 ANO2Q9NQ90 1003 aa12.1□□□□□ -0.47
HMGB3-201ENST00000325307 AK9Q5TCS8 1911 aa12.1□□□□□ -0.47
HMGB3-201ENST00000325307 CYP2E1P05181 493 aaPredicted RBP12.1□□□□□ -0.47
HMGB3-201ENST00000325307 NMIQ13287 307 aaPredicted RBP12.1□□□□□ -0.47
HMGB3-201ENST00000325307 LRRFIP1Q32MZ4 808 aaKnown RBP12.1□□□□□ -0.47
HMGB3-201ENST00000325307 FBXO33Q7Z6M2 555 aa12.1□□□□□ -0.47
HMGB3-201ENST00000325307 FAM227BQ96M60 508 aa12.1□□□□□ -0.47
HMGB3-201ENST00000325307 SPON1Q9HCB6 807 aa12.1□□□□□ -0.47
HMGB3-201ENST00000325307 G3V3G9 751 aa12.09□□□□□ -0.47
HMGB3-201ENST00000325307 C21orf2O43822 256 aa12.09□□□□□ -0.47
HMGB3-201ENST00000325307 WASHC4Q2M389 1173 aa12.09□□□□□ -0.47
HMGB3-201ENST00000325307 DCAF8Q5TAQ9 597 aa12.09□□□□□ -0.47
HMGB3-201ENST00000325307 KIAA1211Q6ZU35 1233 aa12.09□□□□□ -0.47
HMGB3-201ENST00000325307 DDRGK1Q96HY6 314 aa12.09□□□□□ -0.47
HMGB3-201ENST00000325307 DDX24Q9GZR7 859 aaKnown RBP eCLIP12.09□□□□□ -0.47
HMGB3-201ENST00000325307 TGFB2P61812 414 aa12.09□□□□□ -0.47
HMGB3-201ENST00000325307 ABCF2Q9UG63 623 aa12.09□□□□□ -0.47
HMGB3-201ENST00000325307 DENND2AQ9ULE3 1009 aa12.09□□□□□ -0.47
HMGB3-201ENST00000325307 IL27Q8NEV9 243 aa12.09□□□□□ -0.47
HMGB3-201ENST00000325307 ZC3H12CQ9C0D7 883 aaKnown RBP12.09□□□□□ -0.47
HMGB3-201ENST00000325307 PIH1D3Q9NQM4 214 aaKnown RBP12.09□□□□□ -0.47
HMGB3-201ENST00000325307 JAG2Q9Y219 1238 aa12.09□□□□□ -0.47
Retrieved 100 of 20,778 RNA–protein pairs in 36.9 ms