RNA–Protein interactions for RNA: ENST00000324554.9

USHBP1-202, Transcript of USH1 protein network component harmonin binding protein 1, humanhuman

TSL 2

Gene USHBP1, Length 2,402 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USHBP1-202ENST00000324554 SCAND2PQ9GZW5 306 aaPredicted RBP18.99■□□□□ 0.63
USHBP1-202ENST00000324554 HELLSQ9NRZ9 838 aa18.99■□□□□ 0.63
USHBP1-202ENST00000324554 CCDC192P0DO97 292 aa18.98■□□□□ 0.63
USHBP1-202ENST00000324554 DNTTIP2Q5QJE6 756 aaKnown RBP18.98■□□□□ 0.63
USHBP1-202ENST00000324554 PTF1AQ7RTS3 328 aa18.98■□□□□ 0.63
USHBP1-202ENST00000324554 VSIG10Q8N0Z9 540 aa18.98■□□□□ 0.63
USHBP1-202ENST00000324554 ZNF594Q96JF6 807 aaPredicted RBP18.98■□□□□ 0.63
USHBP1-202ENST00000324554 TFIP11Q9UBB9 837 aaKnown RBP18.98■□□□□ 0.63
USHBP1-202ENST00000324554 DOT1LQ8TEK3 1739 aa18.98■□□□□ 0.63
USHBP1-202ENST00000324554 WNK3Q9BYP7 1800 aa18.98■□□□□ 0.63
USHBP1-202ENST00000324554 HSP90B1P14625 803 aaKnown RBP18.98■□□□□ 0.63
USHBP1-202ENST00000324554 USP21Q9UK80 565 aa18.98■□□□□ 0.63
USHBP1-202ENST00000324554 HLFQ16534 295 aa18.97■□□□□ 0.63
USHBP1-202ENST00000324554 BRF1Q92994 677 aa18.97■□□□□ 0.63
USHBP1-202ENST00000324554 DSCC1Q9BVC3 393 aa18.97■□□□□ 0.63
USHBP1-202ENST00000324554 TEX13AQ9BXU3 409 aaPredicted RBP18.97■□□□□ 0.63
USHBP1-202ENST00000324554 LRRC2Q9BYS8 371 aa18.97■□□□□ 0.63
USHBP1-202ENST00000324554 TBC1D2BQ9UPU7 963 aa18.97■□□□□ 0.63
USHBP1-202ENST00000324554 GPTP24298 496 aa18.96■□□□□ 0.63
USHBP1-202ENST00000324554 ZMYM1Q5SVZ6 1142 aa18.96■□□□□ 0.63
USHBP1-202ENST00000324554 BARGINQ6ZT62 677 aa18.96■□□□□ 0.63
USHBP1-202ENST00000324554 TICAM2Q86XR7 235 aa18.96■□□□□ 0.63
USHBP1-202ENST00000324554 SPATA32Q96LK8 384 aa18.96■□□□□ 0.63
USHBP1-202ENST00000324554 NUP62CLQ9H1M0 184 aa18.96■□□□□ 0.63
USHBP1-202ENST00000324554 KCNF1Q9H3M0 494 aa18.96■□□□□ 0.63
USHBP1-202ENST00000324554 A0A1B0GUL7 405 aa18.96■□□□□ 0.63
USHBP1-202ENST00000324554 CIAO1O76071 339 aa18.96■□□□□ 0.63
USHBP1-202ENST00000324554 SCRN1Q12765 414 aa18.96■□□□□ 0.63
USHBP1-202ENST00000324554 MAP3K11Q16584 847 aa18.96■□□□□ 0.63
USHBP1-202ENST00000324554 SYNE4Q8N205 404 aa18.96■□□□□ 0.63
USHBP1-202ENST00000324554 CCDC85AQ96PX6 553 aaPredicted RBP18.96■□□□□ 0.63
USHBP1-202ENST00000324554 MRVI1Q9Y6F6 885 aa18.96■□□□□ 0.63
USHBP1-202ENST00000324554 LAMA4Q16363 1823 aa18.96■□□□□ 0.63
USHBP1-202ENST00000324554 HMGB1P09429 215 aaKnown RBP18.95■□□□□ 0.62
USHBP1-202ENST00000324554 ATP6V1AP38606 617 aa18.95■□□□□ 0.62
USHBP1-202ENST00000324554 LEO1Q8WVC0 666 aaPredicted RBP18.95■□□□□ 0.62
USHBP1-202ENST00000324554 SPTLC3Q9NUV7 552 aa18.95■□□□□ 0.62
USHBP1-202ENST00000324554 DACT1Q9NYF0 836 aa18.95■□□□□ 0.62
USHBP1-202ENST00000324554 LRP6O75581 1613 aa18.95■□□□□ 0.62
USHBP1-202ENST00000324554 IFIT1P09914 478 aaKnown RBP18.95■□□□□ 0.62
USHBP1-202ENST00000324554 MEX3CQ5U5Q3 659 aaKnown RBP18.95■□□□□ 0.62
USHBP1-202ENST00000324554 DHX32Q7L7V1 743 aaKnown RBP18.95■□□□□ 0.62
USHBP1-202ENST00000324554 PUS3Q9BZE2 481 aaKnown RBP18.95■□□□□ 0.62
USHBP1-202ENST00000324554 TYRO3Q06418 890 aa18.94■□□□□ 0.62
USHBP1-202ENST00000324554 RESTQ13127 1097 aa18.94■□□□□ 0.62
USHBP1-202ENST00000324554 KIF6Q6ZMV9 814 aa18.94■□□□□ 0.62
USHBP1-202ENST00000324554 CKAP2LQ8IYA6 745 aa18.94■□□□□ 0.62
USHBP1-202ENST00000324554 SPC24Q8NBT2 197 aa18.94■□□□□ 0.62
USHBP1-202ENST00000324554 MYRIPQ8NFW9 859 aa18.94■□□□□ 0.62
USHBP1-202ENST00000324554 SMARCC2Q8TAQ2 1214 aa18.94■□□□□ 0.62
USHBP1-202ENST00000324554 FAM200AQ8TCP9 573 aa18.94■□□□□ 0.62
USHBP1-202ENST00000324554 PFKFB2O60825 505 aa18.94■□□□□ 0.62
USHBP1-202ENST00000324554 HSPD1P10809 573 aaKnown RBP18.94■□□□□ 0.62
USHBP1-202ENST00000324554 FGD1P98174 961 aa18.94■□□□□ 0.62
USHBP1-202ENST00000324554 VPS72Q15906 364 aa18.94■□□□□ 0.62
USHBP1-202ENST00000324554 DDX11Q96FC9 970 aa18.94■□□□□ 0.62
USHBP1-202ENST00000324554 FAM89AQ96GI7 184 aa18.94■□□□□ 0.62
USHBP1-202ENST00000324554 ISCA1Q9BUE6 129 aa18.94■□□□□ 0.62
USHBP1-202ENST00000324554 MAST3O60307 1309 aa18.94■□□□□ 0.62
USHBP1-202ENST00000324554 TCIRG1Q13488 830 aa18.93■□□□□ 0.62
USHBP1-202ENST00000324554 LUZP1Q86V48 1076 aa18.93■□□□□ 0.62
USHBP1-202ENST00000324554 PYCARDQ9ULZ3 195 aa18.93■□□□□ 0.62
USHBP1-202ENST00000324554 SPEF2Q9C093 1822 aa18.93■□□□□ 0.62
USHBP1-202ENST00000324554 A0A0G2JLW4 131 aa18.93■□□□□ 0.62
USHBP1-202ENST00000324554 GOLGA6L4A6NEF3 574 aa18.93■□□□□ 0.62
USHBP1-202ENST00000324554 LLPHQ9BRT6 129 aaKnown RBP18.93■□□□□ 0.62
USHBP1-202ENST00000324554 TNMDQ9H2S6 317 aa18.93■□□□□ 0.62
USHBP1-202ENST00000324554 H3BQV1 296 aa18.92■□□□□ 0.62
USHBP1-202ENST00000324554 RNF113AO15541 343 aaKnown RBP18.92■□□□□ 0.62
USHBP1-202ENST00000324554 EXOSC10Q01780 885 aaKnown RBP18.92■□□□□ 0.62
USHBP1-202ENST00000324554 IFFO2Q5TF58 517 aa18.92■□□□□ 0.62
USHBP1-202ENST00000324554 FNBP4Q8N3X1 1017 aaPredicted RBP18.92■□□□□ 0.62
USHBP1-202ENST00000324554 PGBD1Q96JS3 809 aa18.92■□□□□ 0.62
USHBP1-202ENST00000324554 MAP7D2Q96T17 732 aa18.92■□□□□ 0.62
USHBP1-202ENST00000324554 AGXT2Q9BYV1 514 aa18.92■□□□□ 0.62
USHBP1-202ENST00000324554 NWD2Q9ULI1 1742 aa18.92■□□□□ 0.62
USHBP1-202ENST00000324554 LOC102724428A0A0B4J2F2 783 aa18.92■□□□□ 0.62
USHBP1-202ENST00000324554 SIK1P57059 783 aa18.92■□□□□ 0.62
USHBP1-202ENST00000324554 ITPK1Q13572 414 aa18.92■□□□□ 0.62
USHBP1-202ENST00000324554 NSUN7Q8NE18 718 aaKnown RBP18.92■□□□□ 0.62
USHBP1-202ENST00000324554 KIAA1524Q8TCG1 905 aa18.92■□□□□ 0.62
USHBP1-202ENST00000324554 PPIL4Q8WUA2 492 aaKnown RBP eCLIP18.92■□□□□ 0.62
USHBP1-202ENST00000324554 E7EWF7 191 aa18.91■□□□□ 0.62
USHBP1-202ENST00000324554 TSC1Q92574 1164 aa18.91■□□□□ 0.62
USHBP1-202ENST00000324554 ZSCAN16Q9H4T2 348 aaPredicted RBP18.91■□□□□ 0.62
USHBP1-202ENST00000324554 TNKS1BP1Q9C0C2 1729 aaKnown RBP18.91■□□□□ 0.62
USHBP1-202ENST00000324554 NR1I2O75469 434 aa18.91■□□□□ 0.62
USHBP1-202ENST00000324554 APOBRQ0VD83 1088 aa18.91■□□□□ 0.62
USHBP1-202ENST00000324554 CCDC57Q2TAC2 916 aa18.91■□□□□ 0.62
USHBP1-202ENST00000324554 SMIM5Q71RC9 77 aa18.91■□□□□ 0.62
USHBP1-202ENST00000324554 PRIMPOLQ96LW4 560 aa18.91■□□□□ 0.62
USHBP1-202ENST00000324554 DDX19AQ9NUU7 478 aaKnown RBP18.91■□□□□ 0.62
USHBP1-202ENST00000324554 CEP126Q9P2H0 1117 aa18.91■□□□□ 0.62
USHBP1-202ENST00000324554 EP400Q96L91 3159 aa18.9■□□□□ 0.62
USHBP1-202ENST00000324554 MAP3K15Q6ZN16 1313 aa18.9■□□□□ 0.62
USHBP1-202ENST00000324554 M0R2C6 588 aa18.9■□□□□ 0.62
USHBP1-202ENST00000324554 CTDNEP1O95476 244 aa18.9■□□□□ 0.62
USHBP1-202ENST00000324554 ANO6Q4KMQ2 910 aa18.9■□□□□ 0.62
USHBP1-202ENST00000324554 RBM43Q6ZSC3 357 aaKnown RBP18.9■□□□□ 0.62
USHBP1-202ENST00000324554 FAM177BA6PVY3 158 aa18.9■□□□□ 0.62
Retrieved 100 of 20,778 RNA–protein pairs in 27.5 ms