RNA–Protein interactions for RNA: ENST00000324238.6

CRLF3-201, Transcript of cytokine receptor like factor 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CRLF3, Length 2,957 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CRLF3-201ENST00000324238 IQCB1Q15051 598 aa23.3■■□□□ 1.32
CRLF3-201ENST00000324238 RBM43Q6ZSC3 357 aaKnown RBP23.3■■□□□ 1.32
CRLF3-201ENST00000324238 KBTBD3Q8NAB2 608 aa23.3■■□□□ 1.32
CRLF3-201ENST00000324238 CFAP45Q9UL16 551 aa23.3■■□□□ 1.32
CRLF3-201ENST00000324238 BIN1O00499 593 aa23.3■■□□□ 1.32
CRLF3-201ENST00000324238 NPHP1O15259 732 aa23.3■■□□□ 1.32
CRLF3-201ENST00000324238 DCAF5Q96JK2 942 aa23.29■■□□□ 1.32
CRLF3-201ENST00000324238 C1orf167Q5SNV9 1468 aa23.29■■□□□ 1.32
CRLF3-201ENST00000324238 RGPD5Q99666 1765 aa23.29■■□□□ 1.32
CRLF3-201ENST00000324238 E7EWF7 191 aa23.29■■□□□ 1.32
CRLF3-201ENST00000324238 ILDR1Q86SU0 546 aaPredicted RBP23.29■■□□□ 1.32
CRLF3-201ENST00000324238 ALDH8A1Q9H2A2 487 aaPredicted RBP23.29■■□□□ 1.32
CRLF3-201ENST00000324238 PFKFB2O60825 505 aa23.28■■□□□ 1.32
CRLF3-201ENST00000324238 NCBP1Q09161 790 aaKnown RBP23.28■■□□□ 1.32
CRLF3-201ENST00000324238 SNW1Q13573 536 aaKnown RBP23.28■■□□□ 1.32
CRLF3-201ENST00000324238 AOPEPQ8N6M6 819 aa23.28■■□□□ 1.32
CRLF3-201ENST00000324238 LMO7Q8WWI1 1683 aa23.28■■□□□ 1.32
CRLF3-201ENST00000324238 HSPD1P10809 573 aaKnown RBP23.28■■□□□ 1.32
CRLF3-201ENST00000324238 CCDC73Q6ZRK6 1079 aa23.28■■□□□ 1.32
CRLF3-201ENST00000324238 TMEM94Q12767 1356 aa23.27■■□□□ 1.32
CRLF3-201ENST00000324238 ZSCAN20P17040 1043 aaPredicted RBP23.27■■□□□ 1.32
CRLF3-201ENST00000324238 ATG9AQ7Z3C6 839 aa23.27■■□□□ 1.32
CRLF3-201ENST00000324238 KINO60870 393 aaKnown RBP23.27■■□□□ 1.32
CRLF3-201ENST00000324238 SMARCC2Q8TAQ2 1214 aa23.27■■□□□ 1.32
CRLF3-201ENST00000324238 M0R2C6 588 aa23.26■■□□□ 1.31
CRLF3-201ENST00000324238 PTPN21Q16825 1174 aa23.26■■□□□ 1.31
CRLF3-201ENST00000324238 PI16Q6UXB8 463 aa23.26■■□□□ 1.31
CRLF3-201ENST00000324238 ZSCAN16Q9H4T2 348 aaPredicted RBP23.26■■□□□ 1.31
CRLF3-201ENST00000324238 PDIA3P30101 505 aaKnown RBP23.26■■□□□ 1.31
CRLF3-201ENST00000324238 SDF4Q9BRK5 362 aa23.26■■□□□ 1.31
CRLF3-201ENST00000324238 PRDM11Q9NQV5 511 aa23.26■■□□□ 1.31
CRLF3-201ENST00000324238 NCAPD2Q15021 1401 aa23.26■■□□□ 1.31
CRLF3-201ENST00000324238 JCADQ9P266 1359 aa23.26■■□□□ 1.31
CRLF3-201ENST00000324238 SMAP1Q8IYB5 467 aaPredicted RBP23.25■■□□□ 1.31
CRLF3-201ENST00000324238 IFIT1P09914 478 aaKnown RBP23.25■■□□□ 1.31
CRLF3-201ENST00000324238 SKILP12757 684 aa23.25■■□□□ 1.31
CRLF3-201ENST00000324238 FOXO4P98177 505 aa23.25■■□□□ 1.31
CRLF3-201ENST00000324238 WASHC4Q2M389 1173 aa23.25■■□□□ 1.31
CRLF3-201ENST00000324238 LRRC8AQ8IWT6 810 aa23.25■■□□□ 1.31
CRLF3-201ENST00000324238 SYNE4Q8N205 404 aa23.25■■□□□ 1.31
CRLF3-201ENST00000324238 RCOR1Q9UKL0 485 aa23.25■■□□□ 1.31
CRLF3-201ENST00000324238 A0A0G2JS52 829 aa23.25■■□□□ 1.31
CRLF3-201ENST00000324238 RABL6Q3YEC7 729 aaPredicted RBP23.25■■□□□ 1.31
CRLF3-201ENST00000324238 DENND2AQ9ULE3 1009 aa23.25■■□□□ 1.31
CRLF3-201ENST00000324238 CLIC4Q9Y696 253 aa23.25■■□□□ 1.31
CRLF3-201ENST00000324238 MAST3O60307 1309 aa23.24■■□□□ 1.31
CRLF3-201ENST00000324238 FDPSP14324 419 aaKnown RBP23.24■■□□□ 1.31
CRLF3-201ENST00000324238 PCDHA7Q9UN72 937 aa23.24■■□□□ 1.31
CRLF3-201ENST00000324238 ADORA1P30542 326 aa23.24■■□□□ 1.31
CRLF3-201ENST00000324238 CASP7P55210 303 aa23.24■■□□□ 1.31
CRLF3-201ENST00000324238 DHX40Q8IX18 779 aaKnown RBP23.24■■□□□ 1.31
CRLF3-201ENST00000324238 OSBP2Q969R2 916 aa23.24■■□□□ 1.31
CRLF3-201ENST00000324238 CCDC69A6NI79 296 aa23.23■■□□□ 1.31
CRLF3-201ENST00000324238 EXOSC10Q01780 885 aaKnown RBP23.23■■□□□ 1.31
CRLF3-201ENST00000324238 STX1AQ16623 288 aa23.23■■□□□ 1.31
CRLF3-201ENST00000324238 CCDC112Q8NEF3 446 aa23.23■■□□□ 1.31
CRLF3-201ENST00000324238 A0A1B0GUL7 405 aa23.22■■□□□ 1.31
CRLF3-201ENST00000324238 RXRAP19793 462 aa23.22■■□□□ 1.31
CRLF3-201ENST00000324238 NDUFA8P51970 172 aa23.22■■□□□ 1.31
CRLF3-201ENST00000324238 KAT6BQ8WYB5 2073 aa23.22■■□□□ 1.31
CRLF3-201ENST00000324238 CTIFO43310 598 aaKnown RBP23.22■■□□□ 1.31
CRLF3-201ENST00000324238 SF3A1Q15459 793 aaKnown RBP23.22■■□□□ 1.31
CRLF3-201ENST00000324238 PLBD2Q8NHP8 589 aa23.22■■□□□ 1.31
CRLF3-201ENST00000324238 ANKRD7Q92527 254 aa23.22■■□□□ 1.31
CRLF3-201ENST00000324238 GORABQ5T7V8 394 aa23.22■■□□□ 1.31
CRLF3-201ENST00000324238 CEP135Q66GS9 1140 aa23.22■■□□□ 1.31
CRLF3-201ENST00000324238 FAM89AQ96GI7 184 aa23.21■■□□□ 1.31
CRLF3-201ENST00000324238 DPCR1Q3MIW9 517 aa23.21■■□□□ 1.31
CRLF3-201ENST00000324238 ENGASEQ8NFI3 743 aa23.21■■□□□ 1.31
CRLF3-201ENST00000324238 AIFM3Q96NN9 605 aa23.21■■□□□ 1.31
CRLF3-201ENST00000324238 SCARF1Q14162 830 aa23.2■■□□□ 1.3
CRLF3-201ENST00000324238 PDIA4P13667 645 aaKnown RBP23.2■■□□□ 1.3
CRLF3-201ENST00000324238 ZMYM1Q5SVZ6 1142 aa23.2■■□□□ 1.3
CRLF3-201ENST00000324238 NKX2-3Q8TAU0 364 aa23.2■■□□□ 1.3
CRLF3-201ENST00000324238 CWC25Q9NXE8 425 aaPredicted RBP23.2■■□□□ 1.3
CRLF3-201ENST00000324238 C5P01031 1676 aa23.19■■□□□ 1.3
CRLF3-201ENST00000324238 GPTP24298 496 aa23.19■■□□□ 1.3
CRLF3-201ENST00000324238 FAM160A1Q05DH4 1040 aa23.19■■□□□ 1.3
CRLF3-201ENST00000324238 NAA16Q6N069 864 aaPredicted RBP23.19■■□□□ 1.3
CRLF3-201ENST00000324238 MARCKSP29966 332 aaPredicted RBP23.19■■□□□ 1.3
CRLF3-201ENST00000324238 SMTNL1A8MU46 457 aa23.19■■□□□ 1.3
CRLF3-201ENST00000324238 ZCRB1Q8TBF4 217 aaKnown RBP23.19■■□□□ 1.3
CRLF3-201ENST00000324238 RNF113AO15541 343 aaKnown RBP23.18■■□□□ 1.3
CRLF3-201ENST00000324238 SMC2O95347 1197 aa23.18■■□□□ 1.3
CRLF3-201ENST00000324238 STK38Q15208 465 aa23.18■■□□□ 1.3
CRLF3-201ENST00000324238 STK11IPQ8N1F8 1099 aa23.18■■□□□ 1.3
CRLF3-201ENST00000324238 ZNF215Q9UL58 517 aaPredicted RBP23.18■■□□□ 1.3
CRLF3-201ENST00000324238 CARMIL3Q8ND23 1372 aa23.18■■□□□ 1.3
CRLF3-201ENST00000324238 ARHGAP30Q7Z6I6 1101 aaPredicted RBP23.18■■□□□ 1.3
CRLF3-201ENST00000324238 ZNF396Q96N95 335 aaPredicted RBP23.17■■□□□ 1.3
CRLF3-201ENST00000324238 SH3TC1Q8TE82 1336 aa23.17■■□□□ 1.3
CRLF3-201ENST00000324238 KLF18A0A0U1RQI7 1052 aa23.17■■□□□ 1.3
CRLF3-201ENST00000324238 LLPHQ9BRT6 129 aaKnown RBP23.17■■□□□ 1.3
CRLF3-201ENST00000324238 PALLDQ8WX93 1383 aa23.16■■□□□ 1.3
CRLF3-201ENST00000324238 H7C1W4 665 aa23.16■■□□□ 1.3
CRLF3-201ENST00000324238 HMGB1P09429 215 aaKnown RBP23.16■■□□□ 1.3
CRLF3-201ENST00000324238 PTPN14Q15678 1187 aa23.16■■□□□ 1.3
CRLF3-201ENST00000324238 HELLSQ9NRZ9 838 aa23.16■■□□□ 1.3
CRLF3-201ENST00000324238 ANO10Q9NW15 660 aa23.16■■□□□ 1.3
CRLF3-201ENST00000324238 SLIT3O75094 1523 aa23.16■■□□□ 1.3
Retrieved 100 of 20,778 RNA–protein pairs in 61.3 ms